Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09225 and HMPREF1058_RS09220 are separated by 116 nucleotides HMPREF1058_RS09220 and HMPREF1058_RS09215 are separated by 11 nucleotides HMPREF1058_RS09215 and HMPREF1058_RS09210 are separated by 3 nucleotides HMPREF1058_RS09210 and HMPREF1058_RS09205 are separated by 410 nucleotides
HMPREF1058_RS09225: HMPREF1058_RS09225 - 30S ribosomal protein S11, at 912,417 to 912,806
_RS09225
HMPREF1058_RS09220: HMPREF1058_RS09220 - 30S ribosomal protein S4, at 912,923 to 913,528
_RS09220
HMPREF1058_RS09215: HMPREF1058_RS09215 - DNA-directed RNA polymerase subunit alpha, at 913,540 to 914,532
_RS09215
HMPREF1058_RS09210: HMPREF1058_RS09210 - 50S ribosomal protein L17, at 914,536 to 915,024
_RS09210
HMPREF1058_RS09205: HMPREF1058_RS09205 - hypothetical protein, at 915,435 to 915,860
_RS09205
Position (kb) 913
914
915 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 915.038 kb on + strand at 915.038 kb on + strand at 915.038 kb on + strand at 915.040 kb on + strand at 915.040 kb on + strand at 915.042 kb on + strand at 915.083 kb on + strand at 915.084 kb on - strand at 915.100 kb on + strand at 915.133 kb on + strand at 915.139 kb on + strand at 915.143 kb on - strand at 915.185 kb on - strand at 915.220 kb on - strand at 915.256 kb on + strand at 915.314 kb on + strand at 915.334 kb on + strand at 915.393 kb on - strand at 915.404 kb on + strand at 915.429 kb on + strand at 915.498 kb on + strand, within HMPREF1058_RS09205 at 915.503 kb on - strand, within HMPREF1058_RS09205 at 915.532 kb on + strand, within HMPREF1058_RS09205
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day3 remove 915,038 + -0.3 915,038 + -2.3 915,038 + -1.9 915,040 + -0.3 915,040 + -3.6 915,042 + -3.1 915,083 + +0.1 915,084 - -0.5 915,100 + +0.5 915,133 + +0.9 915,139 + -0.0 915,143 - -0.1 915,185 - -0.9 915,220 - -0.3 915,256 + -1.9 915,314 + +1.1 915,334 + +0.3 915,393 - -0.2 915,404 + +1.2 915,429 + +0.6 915,498 + HMPREF1058_RS09205 0.15 +1.6 915,503 - HMPREF1058_RS09205 0.16 +0.0 915,532 + HMPREF1058_RS09205 0.23 +0.3
Or see this region's nucleotide sequence