Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09915 and HMPREF1058_RS09910 overlap by 32 nucleotides HMPREF1058_RS09910 and HMPREF1058_RS09905 are separated by 6 nucleotides HMPREF1058_RS09905 and HMPREF1058_RS09900 are separated by 204 nucleotides
HMPREF1058_RS09915: HMPREF1058_RS09915 - conjugative transposon protein TraM, at 760,799 to 762,175
_RS09915
HMPREF1058_RS09910: HMPREF1058_RS09910 - DUF3989 domain-containing protein, at 762,144 to 762,464
_RS09910
HMPREF1058_RS09905: HMPREF1058_RS09905 - conjugative transposon protein TraK, at 762,471 to 763,094
_RS09905
HMPREF1058_RS09900: HMPREF1058_RS09900 - conjugative transposon protein TraJ, at 763,299 to 764,303
_RS09900
Position (kb) 762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 761.981 kb on + strand, within HMPREF1058_RS09915 at 762.178 kb on - strand, within HMPREF1058_RS09910 at 762.189 kb on + strand, within HMPREF1058_RS09910 at 762.301 kb on + strand, within HMPREF1058_RS09910 at 762.301 kb on + strand, within HMPREF1058_RS09910 at 762.757 kb on + strand, within HMPREF1058_RS09905 at 762.763 kb on + strand, within HMPREF1058_RS09905 at 763.129 kb on + strand at 763.162 kb on + strand at 763.162 kb on + strand at 763.185 kb on + strand at 763.185 kb on + strand at 763.185 kb on + strand at 763.185 kb on + strand at 763.189 kb on + strand at 763.189 kb on + strand at 763.189 kb on + strand at 763.189 kb on + strand at 763.212 kb on + strand at 763.231 kb on + strand at 763.231 kb on + strand at 763.235 kb on + strand at 763.235 kb on + strand at 763.235 kb on + strand at 763.235 kb on + strand at 763.254 kb on + strand at 763.254 kb on + strand at 763.254 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.263 kb on + strand at 763.627 kb on + strand, within HMPREF1058_RS09900 at 763.828 kb on + strand, within HMPREF1058_RS09900 at 763.846 kb on + strand, within HMPREF1058_RS09900 at 763.846 kb on + strand, within HMPREF1058_RS09900 at 764.084 kb on + strand, within HMPREF1058_RS09900
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 761,981 + HMPREF1058_RS09915 0.86 +2.1 762,178 - HMPREF1058_RS09910 0.11 -1.9 762,189 + HMPREF1058_RS09910 0.14 -0.1 762,301 + HMPREF1058_RS09910 0.49 +4.0 762,301 + HMPREF1058_RS09910 0.49 +0.5 762,757 + HMPREF1058_RS09905 0.46 +0.2 762,763 + HMPREF1058_RS09905 0.47 -2.7 763,129 + +1.2 763,162 + +0.1 763,162 + +0.9 763,185 + -0.6 763,185 + -3.1 763,185 + +1.9 763,185 + +1.2 763,189 + +2.5 763,189 + +0.4 763,189 + +1.1 763,189 + +1.5 763,212 + +1.6 763,231 + +1.6 763,231 + +0.3 763,235 + +1.2 763,235 + +1.6 763,235 + +0.9 763,235 + -0.3 763,254 + +1.2 763,254 + +0.3 763,254 + +1.0 763,258 + +2.2 763,258 + -1.3 763,258 + +0.7 763,258 + +0.1 763,258 + +0.1 763,263 + +0.2 763,627 + HMPREF1058_RS09900 0.33 +0.7 763,828 + HMPREF1058_RS09900 0.53 +0.1 763,846 + HMPREF1058_RS09900 0.54 +1.2 763,846 + HMPREF1058_RS09900 0.54 +0.7 764,084 + HMPREF1058_RS09900 0.78 -1.4
Or see this region's nucleotide sequence