Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03405 and HMPREF1058_RS03400 overlap by 4 nucleotides HMPREF1058_RS03400 and HMPREF1058_RS03395 are separated by 7 nucleotides HMPREF1058_RS03395 and HMPREF1058_RS03390 are separated by 13 nucleotides HMPREF1058_RS03390 and HMPREF1058_RS03385 are separated by 20 nucleotides
HMPREF1058_RS03405: HMPREF1058_RS03405 - SDR family oxidoreductase, at 287,974 to 288,696
_RS03405
HMPREF1058_RS03400: HMPREF1058_RS03400 - long-chain fatty acid--CoA ligase, at 288,693 to 289,907
_RS03400
HMPREF1058_RS03395: HMPREF1058_RS03395 - acyl carrier protein, at 289,915 to 290,139
_RS03395
HMPREF1058_RS03390: HMPREF1058_RS03390 - GNAT family N-acetyltransferase, at 290,153 to 290,626
_RS03390
HMPREF1058_RS03385: HMPREF1058_RS03385 - ATP-grasp domain-containing protein, at 290,647 to 291,852
_RS03385
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 287.816 kb on + strand at 287.928 kb on - strand at 287.930 kb on - strand at 287.931 kb on + strand at 287.946 kb on + strand at 288.012 kb on + strand at 288.018 kb on + strand at 288.018 kb on + strand at 288.174 kb on + strand, within HMPREF1058_RS03405 at 288.251 kb on + strand, within HMPREF1058_RS03405 at 288.251 kb on + strand, within HMPREF1058_RS03405 at 288.251 kb on + strand, within HMPREF1058_RS03405 at 288.252 kb on - strand, within HMPREF1058_RS03405 at 288.252 kb on - strand, within HMPREF1058_RS03405 at 288.252 kb on - strand, within HMPREF1058_RS03405 at 288.277 kb on - strand, within HMPREF1058_RS03405 at 288.277 kb on - strand, within HMPREF1058_RS03405 at 288.298 kb on - strand, within HMPREF1058_RS03405 at 288.306 kb on + strand, within HMPREF1058_RS03405 at 288.306 kb on + strand, within HMPREF1058_RS03405 at 288.333 kb on + strand, within HMPREF1058_RS03405 at 288.334 kb on - strand, within HMPREF1058_RS03405 at 288.336 kb on + strand, within HMPREF1058_RS03405 at 288.369 kb on + strand, within HMPREF1058_RS03405 at 288.594 kb on + strand, within HMPREF1058_RS03405 at 288.617 kb on - strand, within HMPREF1058_RS03405 at 288.650 kb on - strand at 288.884 kb on - strand, within HMPREF1058_RS03400 at 288.917 kb on + strand, within HMPREF1058_RS03400 at 288.951 kb on - strand, within HMPREF1058_RS03400 at 288.966 kb on + strand, within HMPREF1058_RS03400 at 288.967 kb on - strand, within HMPREF1058_RS03400 at 289.046 kb on - strand, within HMPREF1058_RS03400 at 289.100 kb on + strand, within HMPREF1058_RS03400 at 289.197 kb on - strand, within HMPREF1058_RS03400 at 289.204 kb on + strand, within HMPREF1058_RS03400 at 289.209 kb on - strand, within HMPREF1058_RS03400 at 289.233 kb on + strand, within HMPREF1058_RS03400 at 289.242 kb on + strand, within HMPREF1058_RS03400 at 289.243 kb on - strand, within HMPREF1058_RS03400 at 289.324 kb on - strand, within HMPREF1058_RS03400 at 289.326 kb on + strand, within HMPREF1058_RS03400 at 289.327 kb on - strand, within HMPREF1058_RS03400 at 289.372 kb on + strand, within HMPREF1058_RS03400 at 289.373 kb on - strand, within HMPREF1058_RS03400 at 289.495 kb on + strand, within HMPREF1058_RS03400 at 289.495 kb on + strand, within HMPREF1058_RS03400 at 289.517 kb on - strand, within HMPREF1058_RS03400 at 289.559 kb on + strand, within HMPREF1058_RS03400 at 289.599 kb on - strand, within HMPREF1058_RS03400 at 289.761 kb on - strand, within HMPREF1058_RS03400 at 289.822 kb on - strand at 289.831 kb on + strand at 289.831 kb on + strand at 289.832 kb on - strand at 289.832 kb on - strand at 289.841 kb on + strand at 289.841 kb on + strand at 289.842 kb on - strand at 289.845 kb on + strand at 289.855 kb on - strand at 289.868 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.902 kb on - strand at 290.073 kb on + strand, within HMPREF1058_RS03395 at 290.113 kb on - strand, within HMPREF1058_RS03395 at 290.126 kb on - strand at 290.219 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.253 kb on - strand, within HMPREF1058_RS03390 at 290.311 kb on - strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.440 kb on + strand, within HMPREF1058_RS03390 at 290.502 kb on + strand, within HMPREF1058_RS03390 at 290.503 kb on - strand, within HMPREF1058_RS03390 at 290.508 kb on - strand, within HMPREF1058_RS03390 at 290.525 kb on - strand, within HMPREF1058_RS03390 at 290.611 kb on + strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.613 kb on + strand at 290.615 kb on + strand at 290.618 kb on + strand at 290.746 kb on - strand at 290.803 kb on + strand, within HMPREF1058_RS03385 at 290.811 kb on - strand, within HMPREF1058_RS03385 at 290.827 kb on - strand, within HMPREF1058_RS03385 at 290.835 kb on - strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day3 remove 287,816 + -1.7 287,928 - +0.3 287,930 - -1.7 287,931 + -0.5 287,946 + -0.3 288,012 + -0.3 288,018 + -0.8 288,018 + -0.6 288,174 + HMPREF1058_RS03405 0.28 -0.5 288,251 + HMPREF1058_RS03405 0.38 +1.9 288,251 + HMPREF1058_RS03405 0.38 -1.0 288,251 + HMPREF1058_RS03405 0.38 -0.5 288,252 - HMPREF1058_RS03405 0.38 +1.1 288,252 - HMPREF1058_RS03405 0.38 -0.0 288,252 - HMPREF1058_RS03405 0.38 -0.5 288,277 - HMPREF1058_RS03405 0.42 +0.9 288,277 - HMPREF1058_RS03405 0.42 +1.1 288,298 - HMPREF1058_RS03405 0.45 -1.3 288,306 + HMPREF1058_RS03405 0.46 -0.7 288,306 + HMPREF1058_RS03405 0.46 +0.9 288,333 + HMPREF1058_RS03405 0.50 +2.7 288,334 - HMPREF1058_RS03405 0.50 -0.7 288,336 + HMPREF1058_RS03405 0.50 -0.9 288,369 + HMPREF1058_RS03405 0.55 +0.9 288,594 + HMPREF1058_RS03405 0.86 -0.9 288,617 - HMPREF1058_RS03405 0.89 +0.3 288,650 - +1.1 288,884 - HMPREF1058_RS03400 0.16 +2.1 288,917 + HMPREF1058_RS03400 0.18 -1.6 288,951 - HMPREF1058_RS03400 0.21 +0.3 288,966 + HMPREF1058_RS03400 0.22 +1.7 288,967 - HMPREF1058_RS03400 0.23 -1.3 289,046 - HMPREF1058_RS03400 0.29 -0.3 289,100 + HMPREF1058_RS03400 0.33 +0.9 289,197 - HMPREF1058_RS03400 0.41 +0.3 289,204 + HMPREF1058_RS03400 0.42 -0.7 289,209 - HMPREF1058_RS03400 0.42 +2.3 289,233 + HMPREF1058_RS03400 0.44 +0.4 289,242 + HMPREF1058_RS03400 0.45 -1.3 289,243 - HMPREF1058_RS03400 0.45 +1.1 289,324 - HMPREF1058_RS03400 0.52 -1.0 289,326 + HMPREF1058_RS03400 0.52 +0.3 289,327 - HMPREF1058_RS03400 0.52 +0.6 289,372 + HMPREF1058_RS03400 0.56 +0.3 289,373 - HMPREF1058_RS03400 0.56 -0.7 289,495 + HMPREF1058_RS03400 0.66 +1.9 289,495 + HMPREF1058_RS03400 0.66 -0.9 289,517 - HMPREF1058_RS03400 0.68 +2.0 289,559 + HMPREF1058_RS03400 0.71 -0.8 289,599 - HMPREF1058_RS03400 0.75 +2.9 289,761 - HMPREF1058_RS03400 0.88 -1.3 289,822 - +0.4 289,831 + -2.5 289,831 + +0.6 289,832 - -1.3 289,832 - +0.3 289,841 + -0.7 289,841 + +0.3 289,842 - -0.2 289,845 + +2.0 289,855 - -1.7 289,868 - +0.0 289,872 - -0.4 289,872 - -1.6 289,872 - +0.3 289,872 - -0.7 289,872 - -0.7 289,902 - +1.8 290,073 + HMPREF1058_RS03395 0.70 +0.3 290,113 - HMPREF1058_RS03395 0.88 +1.3 290,126 - +0.0 290,219 + HMPREF1058_RS03390 0.14 +0.2 290,252 + HMPREF1058_RS03390 0.21 +0.3 290,252 + HMPREF1058_RS03390 0.21 -0.1 290,253 - HMPREF1058_RS03390 0.21 -0.7 290,311 - HMPREF1058_RS03390 0.33 +0.8 290,335 + HMPREF1058_RS03390 0.38 -0.7 290,335 + HMPREF1058_RS03390 0.38 -1.3 290,354 - HMPREF1058_RS03390 0.42 +0.0 290,354 - HMPREF1058_RS03390 0.42 -2.0 290,354 - HMPREF1058_RS03390 0.42 +0.3 290,440 + HMPREF1058_RS03390 0.61 +1.4 290,502 + HMPREF1058_RS03390 0.74 -0.6 290,503 - HMPREF1058_RS03390 0.74 -1.7 290,508 - HMPREF1058_RS03390 0.75 -1.3 290,525 - HMPREF1058_RS03390 0.78 -2.7 290,611 + -2.0 290,612 - +1.9 290,612 - -1.0 290,612 - -0.9 290,613 + +0.4 290,615 + +1.9 290,618 + -1.3 290,746 - -1.7 290,803 + HMPREF1058_RS03385 0.13 -2.0 290,811 - HMPREF1058_RS03385 0.14 -0.0 290,827 - HMPREF1058_RS03385 0.15 +1.3 290,835 - HMPREF1058_RS03385 0.16 +1.3 290,897 + HMPREF1058_RS03385 0.21 +0.7 290,897 + HMPREF1058_RS03385 0.21 +0.1 290,898 - HMPREF1058_RS03385 0.21 -0.0 290,898 - HMPREF1058_RS03385 0.21 -0.7
Or see this region's nucleotide sequence