Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08815

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3
1,022,360	-				+2.6
1,022,360	-				-1.7
1,022,423	-				-0.1
1,022,478	+				-0.0
1,022,567	+				-2.9
1,022,674	+				+0.5
1,022,675	-				-1.2
1,022,675	-				+2.1
1,022,677	-				+1.3
1,022,677	-				+0.4
1,022,680	+				-0.7
1,022,681	-				-0.9
1,022,834	+				-1.1
1,022,877	-				-2.9
1,022,919	-				-0.1
1,023,088	+				-1.7
1,023,173	+				-0.6
1,023,211	-				+1.2
1,023,314	+				+2.8
1,023,342	-				+4.1
1,023,362	+				-3.9
1,023,362	+				-0.9
1,023,365	+				-1.1
1,023,366	-				-0.3
1,023,367	+				-2.7
1,023,367	+				-0.1
1,023,367	+				+0.6
1,023,367	+				-1.7
1,023,367	+				+0.8
1,023,376	-				+0.5
1,023,389	+				+2.2
1,023,390	-				-1.2
1,023,451	+				+0.0
1,023,451	+				+0.2
1,023,454	+				-2.1
1,023,455	-				+1.0
1,023,455	-				-0.7
1,023,497	+				-0.1
1,023,497	+				+0.5
1,023,538	-				-2.1
1,023,541	+				-2.0
1,023,542	-				+0.8
1,023,720	-		HMPREF1058_RS08815	0.13	+0.8
1,023,758	+		HMPREF1058_RS08815	0.14	-0.6
1,023,905	+		HMPREF1058_RS08815	0.19	-4.2
1,023,938	+		HMPREF1058_RS08815	0.20	-2.1
1,023,942	+		HMPREF1058_RS08815	0.20	+0.7
1,023,942	+		HMPREF1058_RS08815	0.20	-0.1
1,023,960	-		HMPREF1058_RS08815	0.21	-2.0
1,023,983	+		HMPREF1058_RS08815	0.22	+1.6
1,023,984	-		HMPREF1058_RS08815	0.22	-1.9
1,024,029	+		HMPREF1058_RS08815	0.23	-1.7
1,024,178	+		HMPREF1058_RS08815	0.28	-1.1
1,024,213	+		HMPREF1058_RS08815	0.29	-1.1
1,024,213	+		HMPREF1058_RS08815	0.29	-0.6
1,024,214	-		HMPREF1058_RS08815	0.29	-0.5
1,024,214	-		HMPREF1058_RS08815	0.29	+0.2
1,024,241	+		HMPREF1058_RS08815	0.30	-1.1
1,024,259	-		HMPREF1058_RS08815	0.31	-1.6
1,024,275	-		HMPREF1058_RS08815	0.31	+0.3
1,024,361	+		HMPREF1058_RS08815	0.34	+0.3
1,024,382	+		HMPREF1058_RS08815	0.35	+0.6
1,024,408	-		HMPREF1058_RS08815	0.36	+0.4
1,024,409	+		HMPREF1058_RS08815	0.36	-4.0
1,024,409	+		HMPREF1058_RS08815	0.36	-2.6
1,024,433	+		HMPREF1058_RS08815	0.37	+1.5
1,024,434	-		HMPREF1058_RS08815	0.37	+2.3
1,024,444	+		HMPREF1058_RS08815	0.37	+0.7
1,024,444	+		HMPREF1058_RS08815	0.37	-0.4
1,024,445	-				-1.1
1,024,445	-		HMPREF1058_RS08815	0.37	-0.2
1,024,445	-		HMPREF1058_RS08815	0.37	-1.3
1,024,521	+		HMPREF1058_RS08815	0.40	-1.1
1,024,522	-		HMPREF1058_RS08815	0.40	-0.2
1,024,544	-		HMPREF1058_RS08815	0.40	+1.5
1,024,616	+		HMPREF1058_RS08815	0.43	+1.0
1,024,627	-		HMPREF1058_RS08815	0.43	-2.1
1,024,628	+		HMPREF1058_RS08815	0.43	+0.7
1,024,628	+		HMPREF1058_RS08815	0.43	-3.0
1,024,628	+		HMPREF1058_RS08815	0.43	-0.2
1,024,629	-		HMPREF1058_RS08815	0.43	+1.1
1,024,629	-		HMPREF1058_RS08815	0.43	-0.6
1,024,642	-		HMPREF1058_RS08815	0.43	+0.9
1,024,649	+		HMPREF1058_RS08815	0.44	-0.1
1,024,649	+		HMPREF1058_RS08815	0.44	-1.2
1,024,649	+		HMPREF1058_RS08815	0.44	+0.1
1,024,673	+		HMPREF1058_RS08815	0.45	-2.1
1,024,743	-		HMPREF1058_RS08815	0.47	-0.7
1,024,752	+		HMPREF1058_RS08815	0.47	-0.7
1,024,758	-		HMPREF1058_RS08815	0.47	-1.1
1,024,776	-		HMPREF1058_RS08815	0.48	-1.1
1,024,934	+		HMPREF1058_RS08815	0.53	-0.1
1,024,954	-		HMPREF1058_RS08815	0.54	+0.1
1,024,954	-		HMPREF1058_RS08815	0.54	+2.1
1,024,973	+		HMPREF1058_RS08815	0.54	-0.4
1,024,973	+		HMPREF1058_RS08815	0.54	-2.0
1,024,974	-		HMPREF1058_RS08815	0.54	-2.5
1,025,050	+		HMPREF1058_RS08815	0.57	-0.1
1,025,051	-		HMPREF1058_RS08815	0.57	+1.1
1,025,051	-		HMPREF1058_RS08815	0.57	-0.5
1,025,169	+		HMPREF1058_RS08815	0.61	-0.5
1,025,169	+		HMPREF1058_RS08815	0.61	-5.4
1,025,170	-		HMPREF1058_RS08815	0.61	-0.3
1,025,192	+		HMPREF1058_RS08815	0.62	-4.3
1,025,199	-		HMPREF1058_RS08815	0.62	+0.7
1,025,199	-		HMPREF1058_RS08815	0.62	-2.7
1,025,205	-		HMPREF1058_RS08815	0.62	-0.4
1,025,375	+		HMPREF1058_RS08815	0.68	-0.4
1,025,376	-		HMPREF1058_RS08815	0.68	-0.2
1,025,376	-		HMPREF1058_RS08815	0.68	-3.6
1,025,387	+				-1.7
1,025,387	+		HMPREF1058_RS08815	0.68	+0.5
1,025,426	+		HMPREF1058_RS08815	0.69	-1.7
1,025,486	+		HMPREF1058_RS08815	0.71	-0.6
1,025,486	+		HMPREF1058_RS08815	0.71	-0.0
1,025,491	+		HMPREF1058_RS08815	0.72	+1.0
1,025,503	-		HMPREF1058_RS08815	0.72	-2.1
1,025,513	-		HMPREF1058_RS08815	0.72	-0.4
1,025,513	-		HMPREF1058_RS08815	0.72	-3.1
1,025,653	+		HMPREF1058_RS08815	0.77	-1.7
1,025,718	-		HMPREF1058_RS08815	0.79	+4.0
1,025,730	-		HMPREF1058_RS08815	0.79	-0.4
1,025,764	-		HMPREF1058_RS08815	0.81	-0.7
1,025,766	-		HMPREF1058_RS08815	0.81	-0.2
1,025,839	+		HMPREF1058_RS08815	0.83	-0.5
1,025,839	+		HMPREF1058_RS08815	0.83	-0.9
1,025,876	+		HMPREF1058_RS08815	0.84	+0.5
1,025,910	+		HMPREF1058_RS08815	0.85	-3.1
1,025,911	-		HMPREF1058_RS08815	0.85	+1.0
1,025,911	-		HMPREF1058_RS08815	0.85	+1.1
1,025,928	-		HMPREF1058_RS08815	0.86	+0.1
1,025,928	-		HMPREF1058_RS08815	0.86	-2.1
1,025,930	+		HMPREF1058_RS08815	0.86	+0.5
1,025,931	-		HMPREF1058_RS08815	0.86	+2.4
1,026,030	-		HMPREF1058_RS08815	0.89	-1.4
1,026,119	+				+1.7
1,026,119	+				+0.0
1,026,120	-				-0.1
1,026,140	-				-1.1
1,026,144	-				+1.5
1,026,210	-				+1.1
1,026,216	+				-2.9
1,026,239	-				+1.4
1,026,258	-				-1.8
1,026,277	+				-2.9
1,026,344	-				+0.9
1,026,405	+				+0.3
1,026,421	-				+0.8
1,026,543	-				-1.3
1,026,662	+		HMPREF1058_RS08810	0.16	-1.1
1,026,716	+		HMPREF1058_RS08810	0.19	-0.1
1,026,716	+		HMPREF1058_RS08810	0.19	-0.1
1,026,717	-		HMPREF1058_RS08810	0.19	+0.9
1,026,750	-		HMPREF1058_RS08810	0.21	-0.7
1,026,770	-		HMPREF1058_RS08810	0.22	+0.9
1,026,829	+		HMPREF1058_RS08810	0.25	-1.8
1,026,872	-		HMPREF1058_RS08810	0.28	-1.3
1,027,046	+		HMPREF1058_RS08810	0.38	+0.8
1,027,047	-		HMPREF1058_RS08810	0.38	+0.6
1,027,047	-		HMPREF1058_RS08810	0.38	-1.4
1,027,047	-		HMPREF1058_RS08810	0.38	+0.1
1,027,094	-		HMPREF1058_RS08810	0.40	-1.7
1,027,190	+		HMPREF1058_RS08810	0.46	+1.2
1,027,204	+		HMPREF1058_RS08810	0.47	-1.1
1,027,271	+		HMPREF1058_RS08810	0.50	+1.2
1,027,316	+		HMPREF1058_RS08810	0.53	-1.1