Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18830 and HMPREF1058_RS18825 are separated by 168 nucleotides HMPREF1058_RS18825 and HMPREF1058_RS18820 are separated by 246 nucleotides HMPREF1058_RS18820 and HMPREF1058_RS18815 are separated by 211 nucleotides
HMPREF1058_RS18830: HMPREF1058_RS18830 - hypothetical protein, at 60,870 to 61,079
_RS18830
HMPREF1058_RS18825: HMPREF1058_RS18825 - hypothetical protein, at 61,248 to 61,562
_RS18825
HMPREF1058_RS18820: HMPREF1058_RS18820 - PepSY-like domain-containing protein, at 61,809 to 62,291
_RS18820
HMPREF1058_RS18815: HMPREF1058_RS18815 - AMP-binding protein, at 62,503 to 64,167
_RS18815
Position (kb) 61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 60.259 kb on + strand at 60.329 kb on - strand at 60.418 kb on + strand at 60.419 kb on - strand at 60.464 kb on + strand at 60.464 kb on + strand at 60.467 kb on + strand at 60.486 kb on - strand at 60.498 kb on - strand at 60.502 kb on - strand at 60.546 kb on - strand at 60.557 kb on - strand at 60.561 kb on - strand at 60.573 kb on + strand at 60.573 kb on + strand at 60.574 kb on - strand at 60.589 kb on - strand at 60.645 kb on + strand at 60.670 kb on - strand at 60.670 kb on - strand at 60.702 kb on + strand at 60.765 kb on + strand at 60.810 kb on + strand at 60.932 kb on + strand, within HMPREF1058_RS18830 at 60.932 kb on + strand, within HMPREF1058_RS18830 at 60.958 kb on + strand, within HMPREF1058_RS18830 at 61.010 kb on + strand, within HMPREF1058_RS18830 at 61.061 kb on - strand at 61.062 kb on + strand at 61.064 kb on + strand at 61.064 kb on + strand at 61.065 kb on - strand at 61.069 kb on + strand at 61.082 kb on + strand at 61.083 kb on - strand at 61.120 kb on - strand at 61.125 kb on + strand at 61.126 kb on - strand at 61.129 kb on - strand at 61.201 kb on - strand at 61.276 kb on - strand at 61.537 kb on - strand at 61.546 kb on - strand at 61.567 kb on - strand at 61.781 kb on - strand at 61.802 kb on - strand at 61.830 kb on - strand at 61.831 kb on + strand at 61.865 kb on - strand, within HMPREF1058_RS18820 at 61.865 kb on - strand, within HMPREF1058_RS18820 at 61.884 kb on - strand, within HMPREF1058_RS18820 at 61.892 kb on + strand, within HMPREF1058_RS18820 at 61.909 kb on + strand, within HMPREF1058_RS18820 at 61.910 kb on - strand, within HMPREF1058_RS18820 at 61.930 kb on + strand, within HMPREF1058_RS18820 at 61.956 kb on + strand, within HMPREF1058_RS18820 at 61.956 kb on + strand, within HMPREF1058_RS18820 at 61.997 kb on - strand, within HMPREF1058_RS18820 at 62.071 kb on + strand, within HMPREF1058_RS18820 at 62.071 kb on + strand, within HMPREF1058_RS18820 at 62.071 kb on + strand, within HMPREF1058_RS18820 at 62.131 kb on + strand, within HMPREF1058_RS18820 at 62.166 kb on - strand, within HMPREF1058_RS18820 at 62.251 kb on - strand at 62.292 kb on + strand at 62.295 kb on + strand at 62.312 kb on + strand at 62.335 kb on - strand at 62.393 kb on + strand at 62.485 kb on - strand at 62.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 remove 60,259 + -1.0 60,329 - -1.6 60,418 + -3.0 60,419 - +2.2 60,464 + -0.5 60,464 + +0.6 60,467 + +0.7 60,486 - -1.0 60,498 - +0.4 60,502 - -3.3 60,546 - +2.3 60,557 - +0.5 60,561 - +0.2 60,573 + +0.6 60,573 + -0.8 60,574 - +1.2 60,589 - -2.3 60,645 + -1.6 60,670 - -1.3 60,670 - +0.3 60,702 + +2.4 60,765 + -3.5 60,810 + -1.6 60,932 + HMPREF1058_RS18830 0.30 -1.7 60,932 + HMPREF1058_RS18830 0.30 -1.6 60,958 + HMPREF1058_RS18830 0.42 -0.0 61,010 + HMPREF1058_RS18830 0.67 -0.7 61,061 - -1.6 61,062 + -2.0 61,064 + -0.0 61,064 + +1.0 61,065 - -0.3 61,069 + +0.4 61,082 + -2.0 61,083 - -2.1 61,120 - -0.0 61,125 + -2.7 61,126 - -1.0 61,129 - -1.9 61,201 - +0.4 61,276 - +1.2 61,537 - -0.6 61,546 - +1.1 61,567 - +0.6 61,781 - -2.4 61,802 - -1.7 61,830 - -1.3 61,831 + +1.0 61,865 - HMPREF1058_RS18820 0.12 -1.8 61,865 - HMPREF1058_RS18820 0.12 -0.0 61,884 - HMPREF1058_RS18820 0.16 +1.0 61,892 + HMPREF1058_RS18820 0.17 +0.2 61,909 + HMPREF1058_RS18820 0.21 -1.8 61,910 - HMPREF1058_RS18820 0.21 +1.4 61,930 + HMPREF1058_RS18820 0.25 +2.0 61,956 + HMPREF1058_RS18820 0.30 -0.7 61,956 + HMPREF1058_RS18820 0.30 -0.5 61,997 - HMPREF1058_RS18820 0.39 -0.0 62,071 + HMPREF1058_RS18820 0.54 +4.4 62,071 + HMPREF1058_RS18820 0.54 +5.3 62,071 + HMPREF1058_RS18820 0.54 -2.0 62,131 + HMPREF1058_RS18820 0.67 -1.4 62,166 - HMPREF1058_RS18820 0.74 +0.2 62,251 - -0.3 62,292 + -0.3 62,295 + -2.3 62,312 + +0.4 62,335 - +0.6 62,393 + +2.3 62,485 - -1.6 62,544 + -0.8
Or see this region's nucleotide sequence