Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17605 and HMPREF1058_RS17600 are separated by 132 nucleotides HMPREF1058_RS17600 and HMPREF1058_RS17595 are separated by 191 nucleotides HMPREF1058_RS17595 and HMPREF1058_RS17590 are separated by 24 nucleotides
HMPREF1058_RS17605: HMPREF1058_RS17605 - DedA family protein, at 388,944 to 389,588
_RS17605
HMPREF1058_RS17600: HMPREF1058_RS17600 - hypothetical protein, at 389,721 to 390,146
_RS17600
HMPREF1058_RS17595: HMPREF1058_RS17595 - Lrp/AsnC family transcriptional regulator, at 390,338 to 390,808
_RS17595
HMPREF1058_RS17590: HMPREF1058_RS17590 - magnesium/cobalt transporter CorA, at 390,833 to 391,873
_RS17590
Position (kb) 390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 389.382 kb on - strand, within HMPREF1058_RS17605 at 389.385 kb on - strand, within HMPREF1058_RS17605 at 389.495 kb on + strand, within HMPREF1058_RS17605 at 389.509 kb on + strand, within HMPREF1058_RS17605 at 389.519 kb on + strand, within HMPREF1058_RS17605 at 389.537 kb on + strand at 389.538 kb on - strand at 389.538 kb on - strand at 389.547 kb on - strand at 389.567 kb on + strand at 389.591 kb on + strand at 389.591 kb on + strand at 389.592 kb on - strand at 389.592 kb on - strand at 389.594 kb on - strand at 389.594 kb on - strand at 389.600 kb on + strand at 389.603 kb on + strand at 389.604 kb on - strand at 389.608 kb on + strand at 389.609 kb on - strand at 389.611 kb on - strand at 389.681 kb on - strand at 389.681 kb on - strand at 389.718 kb on - strand at 389.750 kb on + strand at 389.752 kb on + strand at 389.753 kb on - strand at 389.775 kb on - strand, within HMPREF1058_RS17600 at 389.780 kb on - strand, within HMPREF1058_RS17600 at 389.786 kb on + strand, within HMPREF1058_RS17600 at 389.919 kb on - strand, within HMPREF1058_RS17600 at 389.945 kb on - strand, within HMPREF1058_RS17600 at 389.968 kb on - strand, within HMPREF1058_RS17600 at 389.993 kb on + strand, within HMPREF1058_RS17600 at 389.994 kb on - strand, within HMPREF1058_RS17600 at 390.008 kb on + strand, within HMPREF1058_RS17600 at 390.106 kb on - strand at 390.106 kb on - strand at 390.119 kb on + strand at 390.120 kb on - strand at 390.122 kb on - strand at 390.130 kb on + strand at 390.131 kb on - strand at 390.131 kb on - strand at 390.132 kb on + strand at 390.132 kb on + strand at 390.132 kb on + strand at 390.135 kb on - strand at 390.135 kb on - strand at 390.135 kb on - strand at 390.137 kb on - strand at 390.137 kb on - strand at 390.146 kb on + strand at 390.228 kb on + strand at 390.228 kb on + strand at 390.239 kb on + strand at 390.239 kb on + strand at 390.240 kb on - strand at 390.267 kb on + strand at 390.283 kb on + strand at 390.284 kb on - strand at 390.284 kb on - strand at 390.308 kb on - strand at 390.333 kb on - strand at 390.343 kb on + strand at 390.382 kb on - strand at 390.386 kb on - strand, within HMPREF1058_RS17595 at 390.386 kb on - strand, within HMPREF1058_RS17595 at 390.491 kb on + strand, within HMPREF1058_RS17595 at 390.491 kb on + strand, within HMPREF1058_RS17595 at 390.492 kb on - strand, within HMPREF1058_RS17595 at 390.567 kb on + strand, within HMPREF1058_RS17595 at 390.609 kb on + strand, within HMPREF1058_RS17595 at 390.630 kb on + strand, within HMPREF1058_RS17595 at 390.641 kb on + strand, within HMPREF1058_RS17595 at 390.642 kb on - strand, within HMPREF1058_RS17595 at 390.642 kb on - strand, within HMPREF1058_RS17595 at 390.666 kb on - strand, within HMPREF1058_RS17595 at 390.678 kb on + strand, within HMPREF1058_RS17595 at 390.698 kb on + strand, within HMPREF1058_RS17595 at 390.699 kb on - strand, within HMPREF1058_RS17595 at 390.806 kb on + strand at 390.811 kb on - strand at 390.853 kb on + strand at 390.864 kb on + strand at 390.865 kb on - strand at 390.869 kb on - strand at 390.869 kb on - strand at 390.882 kb on - strand at 390.905 kb on + strand at 390.906 kb on - strand at 390.906 kb on - strand at 390.909 kb on + strand at 390.910 kb on - strand at 390.989 kb on + strand, within HMPREF1058_RS17590 at 390.990 kb on - strand, within HMPREF1058_RS17590 at 390.992 kb on - strand, within HMPREF1058_RS17590 at 390.994 kb on + strand, within HMPREF1058_RS17590 at 390.995 kb on - strand, within HMPREF1058_RS17590 at 391.053 kb on + strand, within HMPREF1058_RS17590 at 391.053 kb on + strand, within HMPREF1058_RS17590 at 391.054 kb on - strand, within HMPREF1058_RS17590 at 391.057 kb on + strand, within HMPREF1058_RS17590 at 391.061 kb on + strand, within HMPREF1058_RS17590 at 391.095 kb on - strand, within HMPREF1058_RS17590 at 391.220 kb on - strand, within HMPREF1058_RS17590 at 391.354 kb on + strand, within HMPREF1058_RS17590 at 391.355 kb on - strand, within HMPREF1058_RS17590 at 391.355 kb on - strand, within HMPREF1058_RS17590 at 391.448 kb on + strand, within HMPREF1058_RS17590 at 391.448 kb on + strand, within HMPREF1058_RS17590 at 391.513 kb on + strand, within HMPREF1058_RS17590 at 391.513 kb on + strand, within HMPREF1058_RS17590 at 391.534 kb on - strand, within HMPREF1058_RS17590 at 391.577 kb on - strand, within HMPREF1058_RS17590 at 391.577 kb on - strand, within HMPREF1058_RS17590 at 391.578 kb on + strand, within HMPREF1058_RS17590 at 391.579 kb on - strand, within HMPREF1058_RS17590 at 391.582 kb on + strand, within HMPREF1058_RS17590 at 391.582 kb on + strand, within HMPREF1058_RS17590 at 391.582 kb on + strand, within HMPREF1058_RS17590 at 391.601 kb on - strand, within HMPREF1058_RS17590 at 391.631 kb on + strand, within HMPREF1058_RS17590 at 391.632 kb on - strand, within HMPREF1058_RS17590 at 391.673 kb on + strand, within HMPREF1058_RS17590 at 391.673 kb on + strand, within HMPREF1058_RS17590 at 391.674 kb on - strand, within HMPREF1058_RS17590 at 391.715 kb on + strand, within HMPREF1058_RS17590 at 391.734 kb on + strand, within HMPREF1058_RS17590 at 391.747 kb on + strand, within HMPREF1058_RS17590 at 391.777 kb on + strand at 391.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 remove 389,382 - HMPREF1058_RS17605 0.68 -0.4 389,385 - HMPREF1058_RS17605 0.68 -2.2 389,495 + HMPREF1058_RS17605 0.85 -1.3 389,509 + HMPREF1058_RS17605 0.88 +0.2 389,519 + HMPREF1058_RS17605 0.89 +0.5 389,537 + -0.0 389,538 - -0.6 389,538 - -0.4 389,547 - -0.4 389,567 + -1.0 389,591 + +0.1 389,591 + +0.6 389,592 - -0.9 389,592 - +0.3 389,594 - -1.8 389,594 - +1.0 389,600 + -1.2 389,603 + -0.0 389,604 - -1.6 389,608 + -1.8 389,609 - -1.8 389,611 - +1.6 389,681 - -1.0 389,681 - -1.1 389,718 - -0.3 389,750 + -0.4 389,752 + +0.7 389,753 - -0.0 389,775 - HMPREF1058_RS17600 0.13 +0.6 389,780 - HMPREF1058_RS17600 0.14 +0.7 389,786 + HMPREF1058_RS17600 0.15 -0.9 389,919 - HMPREF1058_RS17600 0.46 -0.0 389,945 - HMPREF1058_RS17600 0.53 +0.2 389,968 - HMPREF1058_RS17600 0.58 +0.3 389,993 + HMPREF1058_RS17600 0.64 -0.4 389,994 - HMPREF1058_RS17600 0.64 -2.6 390,008 + HMPREF1058_RS17600 0.67 -0.0 390,106 - +2.0 390,106 - -1.1 390,119 + -0.6 390,120 - -2.3 390,122 - +1.5 390,130 + -0.1 390,131 - +1.0 390,131 - -2.0 390,132 + +1.5 390,132 + +1.3 390,132 + -2.3 390,135 - -0.0 390,135 - -1.0 390,135 - +0.8 390,137 - -0.3 390,137 - -1.0 390,146 + +0.0 390,228 + -2.6 390,228 + -1.4 390,239 + -0.0 390,239 + -0.3 390,240 - -0.6 390,267 + -1.6 390,283 + -0.0 390,284 - -2.3 390,284 - +0.6 390,308 - -1.0 390,333 - -0.7 390,343 + +0.8 390,382 - +0.5 390,386 - HMPREF1058_RS17595 0.10 -1.6 390,386 - HMPREF1058_RS17595 0.10 +0.5 390,491 + HMPREF1058_RS17595 0.32 -0.8 390,491 + HMPREF1058_RS17595 0.32 -0.0 390,492 - HMPREF1058_RS17595 0.33 -1.3 390,567 + HMPREF1058_RS17595 0.49 -3.2 390,609 + HMPREF1058_RS17595 0.58 -0.0 390,630 + HMPREF1058_RS17595 0.62 +2.7 390,641 + HMPREF1058_RS17595 0.64 +4.2 390,642 - HMPREF1058_RS17595 0.65 +2.2 390,642 - HMPREF1058_RS17595 0.65 +0.4 390,666 - HMPREF1058_RS17595 0.70 +0.3 390,678 + HMPREF1058_RS17595 0.72 +1.7 390,698 + HMPREF1058_RS17595 0.76 -1.6 390,699 - HMPREF1058_RS17595 0.77 +0.2 390,806 + -0.1 390,811 - +1.5 390,853 + +3.3 390,864 + +0.5 390,865 - +0.3 390,869 - -0.0 390,869 - -1.3 390,882 - -1.2 390,905 + +0.7 390,906 - -0.9 390,906 - +1.3 390,909 + +1.9 390,910 - +2.6 390,989 + HMPREF1058_RS17590 0.15 +0.9 390,990 - HMPREF1058_RS17590 0.15 +1.3 390,992 - HMPREF1058_RS17590 0.15 -0.5 390,994 + HMPREF1058_RS17590 0.15 +1.0 390,995 - HMPREF1058_RS17590 0.16 -3.1 391,053 + HMPREF1058_RS17590 0.21 -3.3 391,053 + HMPREF1058_RS17590 0.21 +1.3 391,054 - HMPREF1058_RS17590 0.21 +0.7 391,057 + HMPREF1058_RS17590 0.22 -0.0 391,061 + HMPREF1058_RS17590 0.22 -2.8 391,095 - HMPREF1058_RS17590 0.25 +0.7 391,220 - HMPREF1058_RS17590 0.37 -0.4 391,354 + HMPREF1058_RS17590 0.50 -2.0 391,355 - HMPREF1058_RS17590 0.50 -0.0 391,355 - HMPREF1058_RS17590 0.50 -1.2 391,448 + HMPREF1058_RS17590 0.59 -0.2 391,448 + HMPREF1058_RS17590 0.59 -2.0 391,513 + HMPREF1058_RS17590 0.65 -0.0 391,513 + HMPREF1058_RS17590 0.65 -2.5 391,534 - HMPREF1058_RS17590 0.67 +0.7 391,577 - HMPREF1058_RS17590 0.71 -1.8 391,577 - HMPREF1058_RS17590 0.71 +0.7 391,578 + HMPREF1058_RS17590 0.72 +1.0 391,579 - HMPREF1058_RS17590 0.72 +0.3 391,582 + HMPREF1058_RS17590 0.72 -2.8 391,582 + HMPREF1058_RS17590 0.72 +0.9 391,582 + HMPREF1058_RS17590 0.72 -2.3 391,601 - HMPREF1058_RS17590 0.74 -0.8 391,631 + HMPREF1058_RS17590 0.77 -1.0 391,632 - HMPREF1058_RS17590 0.77 -0.0 391,673 + HMPREF1058_RS17590 0.81 -1.9 391,673 + HMPREF1058_RS17590 0.81 -0.5 391,674 - HMPREF1058_RS17590 0.81 -1.7 391,715 + HMPREF1058_RS17590 0.85 -3.2 391,734 + HMPREF1058_RS17590 0.87 -2.3 391,747 + HMPREF1058_RS17590 0.88 -0.6 391,777 + +1.3 391,777 + +0.5
Or see this region's nucleotide sequence