Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12560 and HMPREF1058_RS12555 are separated by 215 nucleotides HMPREF1058_RS12555 and HMPREF1058_RS12550 are separated by 184 nucleotides HMPREF1058_RS12550 and HMPREF1058_RS12545 are separated by 74 nucleotides
HMPREF1058_RS12560: HMPREF1058_RS12560 - redoxin domain-containing protein, at 77,908 to 79,056
_RS12560
HMPREF1058_RS12555: HMPREF1058_RS12555 - polyribonucleotide nucleotidyltransferase, at 79,272 to 81,407
_RS12555
HMPREF1058_RS12550: HMPREF1058_RS12550 - rubredoxin, at 81,592 to 81,756
_RS12550
HMPREF1058_RS12545: HMPREF1058_RS12545 - NAD-dependent deacylase, at 81,831 to 82,529
_RS12545
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 78.377 kb on - strand, within HMPREF1058_RS12560 at 78.385 kb on - strand, within HMPREF1058_RS12560 at 78.385 kb on - strand, within HMPREF1058_RS12560 at 78.389 kb on + strand, within HMPREF1058_RS12560 at 78.390 kb on - strand, within HMPREF1058_RS12560 at 78.427 kb on - strand, within HMPREF1058_RS12560 at 78.471 kb on + strand, within HMPREF1058_RS12560 at 78.495 kb on + strand, within HMPREF1058_RS12560 at 78.497 kb on + strand, within HMPREF1058_RS12560 at 78.561 kb on - strand, within HMPREF1058_RS12560 at 78.592 kb on + strand, within HMPREF1058_RS12560 at 78.811 kb on - strand, within HMPREF1058_RS12560 at 78.911 kb on - strand, within HMPREF1058_RS12560 at 78.911 kb on - strand, within HMPREF1058_RS12560 at 78.911 kb on - strand, within HMPREF1058_RS12560 at 78.963 kb on + strand at 79.072 kb on - strand at 79.072 kb on - strand at 79.137 kb on + strand at 79.149 kb on + strand at 79.150 kb on - strand at 79.157 kb on - strand at 79.180 kb on + strand at 79.181 kb on - strand at 81.187 kb on + strand, within HMPREF1058_RS12555 at 81.370 kb on + strand at 81.406 kb on - strand at 81.482 kb on + strand at 81.510 kb on - strand at 81.513 kb on + strand at 81.539 kb on - strand at 81.539 kb on - strand at 81.543 kb on + strand at 81.543 kb on + strand at 81.544 kb on - strand at 81.566 kb on - strand at 81.567 kb on + strand at 81.568 kb on - strand at 81.583 kb on - strand at 81.587 kb on + strand at 81.588 kb on - strand at 81.621 kb on + strand, within HMPREF1058_RS12550 at 81.622 kb on - strand, within HMPREF1058_RS12550 at 81.720 kb on - strand, within HMPREF1058_RS12550 at 81.734 kb on - strand, within HMPREF1058_RS12550 at 81.734 kb on - strand, within HMPREF1058_RS12550 at 81.934 kb on - strand, within HMPREF1058_RS12545 at 81.990 kb on + strand, within HMPREF1058_RS12545 at 81.990 kb on + strand, within HMPREF1058_RS12545 at 81.990 kb on + strand, within HMPREF1058_RS12545 at 81.991 kb on - strand, within HMPREF1058_RS12545 at 82.011 kb on - strand, within HMPREF1058_RS12545 at 82.142 kb on - strand, within HMPREF1058_RS12545 at 82.166 kb on + strand, within HMPREF1058_RS12545 at 82.221 kb on + strand, within HMPREF1058_RS12545 at 82.233 kb on - strand, within HMPREF1058_RS12545 at 82.233 kb on - strand, within HMPREF1058_RS12545 at 82.370 kb on + strand, within HMPREF1058_RS12545
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 remove 78,377 - HMPREF1058_RS12560 0.41 -0.5 78,385 - HMPREF1058_RS12560 0.42 -2.6 78,385 - HMPREF1058_RS12560 0.42 +0.4 78,389 + HMPREF1058_RS12560 0.42 -1.1 78,390 - HMPREF1058_RS12560 0.42 +0.5 78,427 - HMPREF1058_RS12560 0.45 -1.0 78,471 + HMPREF1058_RS12560 0.49 +0.0 78,495 + HMPREF1058_RS12560 0.51 -0.4 78,497 + HMPREF1058_RS12560 0.51 -2.8 78,561 - HMPREF1058_RS12560 0.57 -0.6 78,592 + HMPREF1058_RS12560 0.60 -1.2 78,811 - HMPREF1058_RS12560 0.79 -1.6 78,911 - HMPREF1058_RS12560 0.87 -1.0 78,911 - HMPREF1058_RS12560 0.87 -0.7 78,911 - HMPREF1058_RS12560 0.87 +0.2 78,963 + +1.3 79,072 - -0.0 79,072 - +0.5 79,137 + +1.7 79,149 + +0.9 79,150 - -2.2 79,157 - +1.3 79,180 + +1.1 79,181 - -1.2 81,187 + HMPREF1058_RS12555 0.90 -1.2 81,370 + -4.3 81,406 - -0.7 81,482 + -0.4 81,510 - -0.8 81,513 + +2.1 81,539 - +0.6 81,539 - -0.5 81,543 + +0.4 81,543 + -0.2 81,544 - +0.5 81,566 - +0.1 81,567 + +1.1 81,568 - -1.5 81,583 - -2.6 81,587 + -0.1 81,588 - -0.7 81,621 + HMPREF1058_RS12550 0.18 +2.9 81,622 - HMPREF1058_RS12550 0.18 +1.0 81,720 - HMPREF1058_RS12550 0.78 +0.3 81,734 - HMPREF1058_RS12550 0.86 +4.3 81,734 - HMPREF1058_RS12550 0.86 +1.0 81,934 - HMPREF1058_RS12545 0.15 -0.7 81,990 + HMPREF1058_RS12545 0.23 +0.6 81,990 + HMPREF1058_RS12545 0.23 -0.2 81,990 + HMPREF1058_RS12545 0.23 -2.3 81,991 - HMPREF1058_RS12545 0.23 +0.9 82,011 - HMPREF1058_RS12545 0.26 -0.5 82,142 - HMPREF1058_RS12545 0.44 -1.2 82,166 + HMPREF1058_RS12545 0.48 -1.4 82,221 + HMPREF1058_RS12545 0.56 -0.9 82,233 - HMPREF1058_RS12545 0.58 -0.9 82,233 - HMPREF1058_RS12545 0.58 +1.2 82,370 + HMPREF1058_RS12545 0.77 +1.5
Or see this region's nucleotide sequence