Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10610 and HMPREF1058_RS10605 overlap by 16 nucleotides HMPREF1058_RS10605 and HMPREF1058_RS10600 overlap by 4 nucleotides HMPREF1058_RS10600 and HMPREF1058_RS10595 overlap by 4 nucleotides
HMPREF1058_RS10610: HMPREF1058_RS10610 - beta-ACP synthase, at 616,702 to 618,432
_RS10610
HMPREF1058_RS10605: HMPREF1058_RS10605 - acyl-CoA thioesterase, at 618,417 to 618,860
_RS10605
HMPREF1058_RS10600: HMPREF1058_RS10600 - hydroxymyristoyl-ACP dehydratase, at 618,857 to 619,294
_RS10600
HMPREF1058_RS10595: HMPREF1058_RS10595 - methyltransferase domain-containing protein, at 619,291 to 620,361
_RS10595
Position (kb) 618
619 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 617.464 kb on - strand, within HMPREF1058_RS10610 at 617.588 kb on + strand, within HMPREF1058_RS10610 at 617.588 kb on + strand, within HMPREF1058_RS10610 at 617.589 kb on - strand, within HMPREF1058_RS10610 at 617.590 kb on + strand, within HMPREF1058_RS10610 at 617.591 kb on - strand, within HMPREF1058_RS10610 at 617.728 kb on + strand, within HMPREF1058_RS10610 at 617.729 kb on - strand, within HMPREF1058_RS10610 at 617.729 kb on - strand, within HMPREF1058_RS10610 at 617.729 kb on - strand, within HMPREF1058_RS10610 at 617.729 kb on - strand, within HMPREF1058_RS10610 at 617.776 kb on + strand, within HMPREF1058_RS10610 at 617.777 kb on - strand, within HMPREF1058_RS10610 at 617.780 kb on - strand, within HMPREF1058_RS10610 at 617.780 kb on - strand, within HMPREF1058_RS10610 at 617.930 kb on + strand, within HMPREF1058_RS10610 at 617.962 kb on + strand, within HMPREF1058_RS10610 at 617.963 kb on - strand, within HMPREF1058_RS10610 at 618.229 kb on + strand, within HMPREF1058_RS10610 at 618.230 kb on - strand, within HMPREF1058_RS10610 at 618.236 kb on - strand, within HMPREF1058_RS10610 at 618.257 kb on - strand, within HMPREF1058_RS10610 at 618.410 kb on + strand at 618.410 kb on + strand at 618.411 kb on - strand at 618.411 kb on - strand at 618.411 kb on - strand at 618.411 kb on - strand at 618.411 kb on - strand at 618.482 kb on + strand, within HMPREF1058_RS10605 at 618.556 kb on + strand, within HMPREF1058_RS10605 at 618.662 kb on + strand, within HMPREF1058_RS10605 at 618.663 kb on - strand, within HMPREF1058_RS10605 at 618.666 kb on + strand, within HMPREF1058_RS10605 at 618.667 kb on - strand, within HMPREF1058_RS10605 at 618.669 kb on + strand, within HMPREF1058_RS10605 at 618.670 kb on - strand, within HMPREF1058_RS10605 at 618.670 kb on - strand, within HMPREF1058_RS10605 at 618.670 kb on - strand, within HMPREF1058_RS10605 at 618.673 kb on + strand, within HMPREF1058_RS10605 at 618.695 kb on + strand, within HMPREF1058_RS10605 at 618.695 kb on + strand, within HMPREF1058_RS10605 at 618.696 kb on - strand, within HMPREF1058_RS10605 at 618.697 kb on + strand, within HMPREF1058_RS10605 at 618.755 kb on - strand, within HMPREF1058_RS10605 at 618.755 kb on - strand, within HMPREF1058_RS10605 at 618.772 kb on - strand, within HMPREF1058_RS10605 at 618.772 kb on - strand, within HMPREF1058_RS10605 at 618.787 kb on - strand, within HMPREF1058_RS10605 at 618.966 kb on - strand, within HMPREF1058_RS10600 at 618.973 kb on + strand, within HMPREF1058_RS10600 at 618.973 kb on + strand, within HMPREF1058_RS10600 at 618.976 kb on - strand, within HMPREF1058_RS10600 at 618.977 kb on + strand, within HMPREF1058_RS10600 at 618.978 kb on - strand, within HMPREF1058_RS10600 at 618.978 kb on - strand, within HMPREF1058_RS10600 at 618.978 kb on - strand, within HMPREF1058_RS10600 at 618.978 kb on - strand, within HMPREF1058_RS10600 at 618.978 kb on - strand, within HMPREF1058_RS10600 at 619.008 kb on - strand, within HMPREF1058_RS10600 at 619.066 kb on + strand, within HMPREF1058_RS10600 at 619.067 kb on - strand, within HMPREF1058_RS10600 at 619.068 kb on + strand, within HMPREF1058_RS10600 at 619.068 kb on + strand, within HMPREF1058_RS10600 at 619.069 kb on - strand, within HMPREF1058_RS10600 at 619.069 kb on - strand, within HMPREF1058_RS10600 at 619.069 kb on - strand, within HMPREF1058_RS10600 at 619.069 kb on - strand, within HMPREF1058_RS10600 at 619.134 kb on - strand, within HMPREF1058_RS10600 at 619.207 kb on - strand, within HMPREF1058_RS10600 at 619.331 kb on - strand at 619.335 kb on + strand at 619.460 kb on + strand, within HMPREF1058_RS10595 at 619.461 kb on - strand, within HMPREF1058_RS10595 at 619.507 kb on - strand, within HMPREF1058_RS10595 at 619.508 kb on + strand, within HMPREF1058_RS10595 at 619.666 kb on + strand, within HMPREF1058_RS10595 at 619.742 kb on - strand, within HMPREF1058_RS10595 at 619.761 kb on - strand, within HMPREF1058_RS10595
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day3 remove 617,464 - HMPREF1058_RS10610 0.44 +0.6 617,588 + HMPREF1058_RS10610 0.51 +0.7 617,588 + HMPREF1058_RS10610 0.51 -0.6 617,589 - HMPREF1058_RS10610 0.51 +0.9 617,590 + HMPREF1058_RS10610 0.51 +0.1 617,591 - HMPREF1058_RS10610 0.51 -2.4 617,728 + HMPREF1058_RS10610 0.59 -2.4 617,729 - HMPREF1058_RS10610 0.59 +0.1 617,729 - HMPREF1058_RS10610 0.59 -3.4 617,729 - HMPREF1058_RS10610 0.59 +0.1 617,729 - HMPREF1058_RS10610 0.59 -0.4 617,776 + HMPREF1058_RS10610 0.62 -0.9 617,777 - HMPREF1058_RS10610 0.62 -0.1 617,780 - HMPREF1058_RS10610 0.62 -0.7 617,780 - HMPREF1058_RS10610 0.62 -0.8 617,930 + HMPREF1058_RS10610 0.71 +0.6 617,962 + HMPREF1058_RS10610 0.73 +0.9 617,963 - HMPREF1058_RS10610 0.73 +4.8 618,229 + HMPREF1058_RS10610 0.88 +0.0 618,230 - HMPREF1058_RS10610 0.88 +0.6 618,236 - HMPREF1058_RS10610 0.89 -3.1 618,257 - HMPREF1058_RS10610 0.90 -0.1 618,410 + +0.7 618,410 + -3.1 618,411 - +0.5 618,411 - +2.1 618,411 - +3.0 618,411 - -1.0 618,411 - +1.4 618,482 + HMPREF1058_RS10605 0.15 -2.2 618,556 + HMPREF1058_RS10605 0.31 -0.0 618,662 + HMPREF1058_RS10605 0.55 +0.7 618,663 - HMPREF1058_RS10605 0.55 +1.3 618,666 + HMPREF1058_RS10605 0.56 +0.8 618,667 - HMPREF1058_RS10605 0.56 +1.1 618,669 + HMPREF1058_RS10605 0.57 +0.4 618,670 - HMPREF1058_RS10605 0.57 +0.7 618,670 - HMPREF1058_RS10605 0.57 +0.4 618,670 - HMPREF1058_RS10605 0.57 +0.4 618,673 + HMPREF1058_RS10605 0.58 +0.8 618,695 + HMPREF1058_RS10605 0.63 -0.9 618,695 + HMPREF1058_RS10605 0.63 +1.5 618,696 - HMPREF1058_RS10605 0.63 +0.1 618,697 + HMPREF1058_RS10605 0.63 -0.3 618,755 - HMPREF1058_RS10605 0.76 -0.6 618,755 - HMPREF1058_RS10605 0.76 +0.6 618,772 - HMPREF1058_RS10605 0.80 -0.1 618,772 - HMPREF1058_RS10605 0.80 +0.2 618,787 - HMPREF1058_RS10605 0.83 +1.1 618,966 - HMPREF1058_RS10600 0.25 +0.6 618,973 + HMPREF1058_RS10600 0.26 -1.1 618,973 + HMPREF1058_RS10600 0.26 +1.5 618,976 - HMPREF1058_RS10600 0.27 -0.7 618,977 + HMPREF1058_RS10600 0.27 -0.4 618,978 - HMPREF1058_RS10600 0.28 +1.5 618,978 - HMPREF1058_RS10600 0.28 +0.6 618,978 - HMPREF1058_RS10600 0.28 -0.8 618,978 - HMPREF1058_RS10600 0.28 -0.5 618,978 - HMPREF1058_RS10600 0.28 +1.5 619,008 - HMPREF1058_RS10600 0.34 -0.2 619,066 + HMPREF1058_RS10600 0.48 +2.5 619,067 - HMPREF1058_RS10600 0.48 -1.0 619,068 + HMPREF1058_RS10600 0.48 -2.0 619,068 + HMPREF1058_RS10600 0.48 +0.8 619,069 - HMPREF1058_RS10600 0.48 -2.5 619,069 - HMPREF1058_RS10600 0.48 +0.3 619,069 - HMPREF1058_RS10600 0.48 -0.4 619,069 - HMPREF1058_RS10600 0.48 -0.1 619,134 - HMPREF1058_RS10600 0.63 -0.0 619,207 - HMPREF1058_RS10600 0.80 +1.7 619,331 - +0.7 619,335 + +0.5 619,460 + HMPREF1058_RS10595 0.16 +0.4 619,461 - HMPREF1058_RS10595 0.16 +0.5 619,507 - HMPREF1058_RS10595 0.20 +1.7 619,508 + HMPREF1058_RS10595 0.20 +0.3 619,666 + HMPREF1058_RS10595 0.35 -2.3 619,742 - HMPREF1058_RS10595 0.42 +0.6 619,761 - HMPREF1058_RS10595 0.44 -4.3
Or see this region's nucleotide sequence