Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17535 and HMPREF1058_RS17530 are separated by 11 nucleotides HMPREF1058_RS17530 and HMPREF1058_RS17525 are separated by 264 nucleotides HMPREF1058_RS17525 and HMPREF1058_RS17520 are separated by 170 nucleotides
HMPREF1058_RS17535: HMPREF1058_RS17535 - IS21-like element helper ATPase IstB, at 404,325 to 405,113
_RS17535
HMPREF1058_RS17530: HMPREF1058_RS17530 - IS21 family transposase, at 405,125 to 406,690
_RS17530
HMPREF1058_RS17525: HMPREF1058_RS17525 - tRNA-Lys, at 406,955 to 407,030
_RS17525
HMPREF1058_RS17520: HMPREF1058_RS17520 - choloylglycine hydrolase family protein, at 407,201 to 408,280
_RS17520
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 404.624 kb on + strand, within HMPREF1058_RS17535 at 404.631 kb on + strand, within HMPREF1058_RS17535 at 405.529 kb on - strand, within HMPREF1058_RS17530 at 406.896 kb on - strand at 406.900 kb on - strand at 407.203 kb on - strand at 407.212 kb on + strand at 407.263 kb on - strand at 407.273 kb on - strand at 407.296 kb on + strand at 407.299 kb on + strand at 407.309 kb on - strand, within HMPREF1058_RS17520 at 407.319 kb on + strand, within HMPREF1058_RS17520 at 407.331 kb on + strand, within HMPREF1058_RS17520 at 407.335 kb on - strand, within HMPREF1058_RS17520 at 407.384 kb on - strand, within HMPREF1058_RS17520 at 407.418 kb on - strand, within HMPREF1058_RS17520 at 407.418 kb on - strand, within HMPREF1058_RS17520 at 407.462 kb on + strand, within HMPREF1058_RS17520 at 407.463 kb on - strand, within HMPREF1058_RS17520 at 407.543 kb on + strand, within HMPREF1058_RS17520 at 407.543 kb on + strand, within HMPREF1058_RS17520 at 407.543 kb on + strand, within HMPREF1058_RS17520 at 407.544 kb on - strand, within HMPREF1058_RS17520 at 407.544 kb on - strand, within HMPREF1058_RS17520 at 407.593 kb on + strand, within HMPREF1058_RS17520 at 407.594 kb on - strand, within HMPREF1058_RS17520 at 407.637 kb on - strand, within HMPREF1058_RS17520 at 407.637 kb on - strand, within HMPREF1058_RS17520 at 407.646 kb on + strand, within HMPREF1058_RS17520 at 407.647 kb on - strand, within HMPREF1058_RS17520 at 407.647 kb on - strand, within HMPREF1058_RS17520 at 407.651 kb on - strand, within HMPREF1058_RS17520
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 remove 404,624 + HMPREF1058_RS17535 0.38 -3.2 404,631 + HMPREF1058_RS17535 0.39 -2.6 405,529 - HMPREF1058_RS17530 0.26 -3.1 406,896 - -1.3 406,900 - +2.6 407,203 - -1.2 407,212 + +1.8 407,263 - -0.8 407,273 - +0.9 407,296 + -2.3 407,299 + +1.0 407,309 - HMPREF1058_RS17520 0.10 -0.8 407,319 + HMPREF1058_RS17520 0.11 -1.3 407,331 + HMPREF1058_RS17520 0.12 +1.0 407,335 - HMPREF1058_RS17520 0.12 +0.8 407,384 - HMPREF1058_RS17520 0.17 +1.2 407,418 - HMPREF1058_RS17520 0.20 +1.0 407,418 - HMPREF1058_RS17520 0.20 -3.1 407,462 + HMPREF1058_RS17520 0.24 +3.9 407,463 - HMPREF1058_RS17520 0.24 +2.4 407,543 + HMPREF1058_RS17520 0.32 -2.9 407,543 + HMPREF1058_RS17520 0.32 +0.3 407,543 + HMPREF1058_RS17520 0.32 +0.2 407,544 - HMPREF1058_RS17520 0.32 -0.2 407,544 - HMPREF1058_RS17520 0.32 -2.3 407,593 + HMPREF1058_RS17520 0.36 -2.3 407,594 - HMPREF1058_RS17520 0.36 -0.1 407,637 - HMPREF1058_RS17520 0.40 -0.5 407,637 - HMPREF1058_RS17520 0.40 -0.5 407,646 + HMPREF1058_RS17520 0.41 -2.8 407,647 - HMPREF1058_RS17520 0.41 -3.3 407,647 - HMPREF1058_RS17520 0.41 +0.2 407,651 - HMPREF1058_RS17520 0.42 +0.8
Or see this region's nucleotide sequence