Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16815 and HMPREF1058_RS16810 are separated by 410 nucleotides HMPREF1058_RS16810 and HMPREF1058_RS16805 are separated by 362 nucleotides
HMPREF1058_RS16815: HMPREF1058_RS16815 - dihydroxy-acid dehydratase, at 588,291 to 590,093
_RS16815
HMPREF1058_RS16810: HMPREF1058_RS16810 - hypothetical protein, at 590,504 to 590,878
_RS16810
HMPREF1058_RS16805: HMPREF1058_RS16805 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 591,241 to 591,819
_RS16805
Position (kb) 590
591 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 589.511 kb on + strand, within HMPREF1058_RS16815 at 589.544 kb on + strand, within HMPREF1058_RS16815 at 589.677 kb on + strand, within HMPREF1058_RS16815 at 589.730 kb on + strand, within HMPREF1058_RS16815 at 589.773 kb on - strand, within HMPREF1058_RS16815 at 589.775 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.817 kb on - strand, within HMPREF1058_RS16815 at 589.818 kb on + strand, within HMPREF1058_RS16815 at 589.819 kb on - strand, within HMPREF1058_RS16815 at 589.824 kb on - strand, within HMPREF1058_RS16815 at 589.842 kb on + strand, within HMPREF1058_RS16815 at 589.843 kb on - strand, within HMPREF1058_RS16815 at 589.923 kb on + strand at 589.940 kb on + strand at 589.972 kb on - strand at 589.980 kb on + strand at 589.981 kb on - strand at 590.097 kb on - strand at 590.107 kb on + strand at 590.118 kb on - strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.119 kb on + strand at 590.120 kb on - strand at 590.120 kb on - strand at 590.166 kb on - strand at 590.175 kb on + strand at 590.176 kb on - strand at 590.180 kb on - strand at 590.186 kb on - strand at 590.192 kb on - strand at 590.192 kb on - strand at 590.239 kb on + strand at 590.239 kb on + strand at 590.261 kb on + strand at 590.267 kb on - strand at 590.270 kb on - strand at 590.273 kb on - strand at 590.279 kb on - strand at 590.279 kb on - strand at 590.426 kb on - strand at 590.506 kb on - strand at 590.506 kb on - strand at 590.529 kb on + strand at 590.529 kb on + strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.530 kb on - strand at 590.557 kb on + strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.558 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.578 kb on - strand, within HMPREF1058_RS16810 at 590.605 kb on + strand, within HMPREF1058_RS16810 at 590.606 kb on - strand, within HMPREF1058_RS16810 at 590.717 kb on - strand, within HMPREF1058_RS16810 at 590.786 kb on + strand, within HMPREF1058_RS16810 at 590.787 kb on - strand, within HMPREF1058_RS16810 at 590.830 kb on + strand, within HMPREF1058_RS16810 at 590.843 kb on + strand at 590.867 kb on + strand at 590.919 kb on - strand at 590.926 kb on - strand at 590.936 kb on + strand at 590.937 kb on - strand at 590.947 kb on + strand at 590.950 kb on + strand at 590.951 kb on - strand at 591.112 kb on + strand at 591.115 kb on - strand at 591.141 kb on + strand at 591.150 kb on - strand at 591.219 kb on + strand at 591.232 kb on + strand at 591.268 kb on + strand at 591.268 kb on + strand at 591.269 kb on - strand at 591.277 kb on + strand at 591.324 kb on - strand, within HMPREF1058_RS16805 at 591.387 kb on - strand, within HMPREF1058_RS16805 at 591.454 kb on - strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.480 kb on + strand, within HMPREF1058_RS16805 at 591.486 kb on + strand, within HMPREF1058_RS16805 at 591.523 kb on - strand, within HMPREF1058_RS16805 at 591.575 kb on - strand, within HMPREF1058_RS16805 at 591.584 kb on + strand, within HMPREF1058_RS16805 at 591.640 kb on - strand, within HMPREF1058_RS16805 at 591.668 kb on + strand, within HMPREF1058_RS16805 at 591.710 kb on + strand, within HMPREF1058_RS16805 at 591.781 kb on - strand at 591.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 remove 589,511 + HMPREF1058_RS16815 0.68 +0.0 589,544 + HMPREF1058_RS16815 0.69 -0.4 589,677 + HMPREF1058_RS16815 0.77 -0.6 589,730 + HMPREF1058_RS16815 0.80 +1.5 589,773 - HMPREF1058_RS16815 0.82 -0.1 589,775 - HMPREF1058_RS16815 0.82 -0.2 589,817 - HMPREF1058_RS16815 0.85 -0.1 589,817 - HMPREF1058_RS16815 0.85 -2.1 589,818 + HMPREF1058_RS16815 0.85 -2.9 589,819 - HMPREF1058_RS16815 0.85 -1.6 589,824 - HMPREF1058_RS16815 0.85 -1.7 589,842 + HMPREF1058_RS16815 0.86 -2.5 589,843 - HMPREF1058_RS16815 0.86 +0.3 589,923 + +0.0 589,940 + -0.6 589,972 - -0.7 589,980 + +0.1 589,981 - +1.1 590,097 - +0.3 590,107 + +0.7 590,118 - -1.9 590,119 + +0.3 590,119 + +0.8 590,119 + -3.1 590,120 - -1.8 590,120 - -0.1 590,166 - +3.7 590,175 + +0.7 590,176 - -0.7 590,180 - +1.3 590,186 - +1.5 590,192 - +0.3 590,192 - +1.5 590,239 + +1.4 590,239 + -3.3 590,261 + -1.3 590,267 - -0.6 590,270 - -2.9 590,273 - +0.4 590,279 - -0.7 590,279 - -1.3 590,426 - -1.4 590,506 - -2.5 590,506 - +1.5 590,529 + +0.2 590,529 + +0.3 590,530 - -2.5 590,530 - -0.5 590,530 - -1.3 590,557 + HMPREF1058_RS16810 0.14 -0.7 590,558 - HMPREF1058_RS16810 0.14 -2.3 590,558 - HMPREF1058_RS16810 0.14 +1.0 590,578 - HMPREF1058_RS16810 0.20 -3.1 590,578 - HMPREF1058_RS16810 0.20 +0.1 590,605 + HMPREF1058_RS16810 0.27 -3.1 590,606 - HMPREF1058_RS16810 0.27 +2.4 590,717 - HMPREF1058_RS16810 0.57 +1.1 590,786 + HMPREF1058_RS16810 0.75 +2.8 590,787 - HMPREF1058_RS16810 0.75 +0.7 590,830 + HMPREF1058_RS16810 0.87 +4.5 590,843 + +1.0 590,867 + -0.0 590,919 - -1.3 590,926 - +0.8 590,936 + +1.6 590,937 - +0.0 590,947 + +0.7 590,950 + -2.3 590,951 - -1.7 591,112 + -2.9 591,115 - -1.0 591,141 + -1.3 591,150 - -0.7 591,219 + +0.8 591,232 + -1.1 591,268 + -1.7 591,268 + -0.3 591,269 - -2.3 591,277 + +0.4 591,324 - HMPREF1058_RS16805 0.14 -4.9 591,387 - HMPREF1058_RS16805 0.25 +0.8 591,454 - HMPREF1058_RS16805 0.37 -0.7 591,480 + HMPREF1058_RS16805 0.41 -0.7 591,480 + HMPREF1058_RS16805 0.41 -3.3 591,486 + HMPREF1058_RS16805 0.42 -3.7 591,523 - HMPREF1058_RS16805 0.49 -2.1 591,575 - HMPREF1058_RS16805 0.58 -0.7 591,584 + HMPREF1058_RS16805 0.59 -0.7 591,640 - HMPREF1058_RS16805 0.69 +3.0 591,668 + HMPREF1058_RS16805 0.74 -3.2 591,710 + HMPREF1058_RS16805 0.81 -2.1 591,781 - -0.7 591,818 - +0.3
Or see this region's nucleotide sequence