Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS14720 and HMPREF1058_RS14715 are separated by 527 nucleotides HMPREF1058_RS14715 and HMPREF1058_RS14710 are separated by 39 nucleotides HMPREF1058_RS14710 and HMPREF1058_RS14705 are separated by 5 nucleotides
HMPREF1058_RS14720: HMPREF1058_RS14720 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 1,120,223 to 1,122,655
_RS14720
HMPREF1058_RS14715: HMPREF1058_RS14715 - DNA repair protein RadA, at 1,123,183 to 1,124,550
_RS14715
HMPREF1058_RS14710: HMPREF1058_RS14710 - DUF1847 domain-containing protein, at 1,124,590 to 1,125,240
_RS14710
HMPREF1058_RS14705: HMPREF1058_RS14705 - FAD-binding protein, at 1,125,246 to 1,126,889
_RS14705
Position (kb) 1123
1124
1125 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1122.215 kb on - strand, within HMPREF1058_RS14720 at 1122.239 kb on + strand, within HMPREF1058_RS14720 at 1122.268 kb on + strand, within HMPREF1058_RS14720 at 1122.271 kb on + strand, within HMPREF1058_RS14720 at 1122.291 kb on + strand, within HMPREF1058_RS14720 at 1122.296 kb on + strand, within HMPREF1058_RS14720 at 1122.296 kb on + strand, within HMPREF1058_RS14720 at 1122.396 kb on - strand, within HMPREF1058_RS14720 at 1122.396 kb on - strand, within HMPREF1058_RS14720 at 1122.426 kb on - strand at 1122.432 kb on + strand at 1122.432 kb on + strand at 1122.432 kb on + strand at 1122.433 kb on - strand at 1122.433 kb on - strand at 1122.433 kb on - strand at 1122.514 kb on + strand at 1122.515 kb on - strand at 1122.522 kb on - strand at 1122.564 kb on - strand at 1122.602 kb on + strand at 1122.661 kb on + strand at 1122.661 kb on + strand at 1122.662 kb on - strand at 1122.769 kb on - strand at 1122.845 kb on + strand at 1122.845 kb on + strand at 1122.847 kb on + strand at 1122.847 kb on + strand at 1122.848 kb on - strand at 1122.848 kb on - strand at 1122.893 kb on + strand at 1122.937 kb on + strand at 1122.937 kb on + strand at 1122.938 kb on - strand at 1122.938 kb on - strand at 1122.938 kb on - strand at 1122.938 kb on - strand at 1122.940 kb on + strand at 1122.940 kb on + strand at 1122.941 kb on - strand at 1122.954 kb on - strand at 1123.018 kb on - strand at 1123.169 kb on + strand at 1123.202 kb on + strand at 1123.202 kb on + strand at 1123.202 kb on + strand at 1123.203 kb on - strand at 1123.204 kb on + strand at 1123.205 kb on - strand at 1123.208 kb on + strand at 1123.209 kb on - strand at 1123.209 kb on - strand at 1123.209 kb on - strand at 1123.280 kb on - strand at 1123.283 kb on + strand at 1123.283 kb on + strand at 1123.464 kb on - strand, within HMPREF1058_RS14715 at 1123.464 kb on - strand, within HMPREF1058_RS14715 at 1123.543 kb on + strand, within HMPREF1058_RS14715 at 1123.543 kb on + strand, within HMPREF1058_RS14715 at 1123.543 kb on + strand, within HMPREF1058_RS14715 at 1123.543 kb on + strand, within HMPREF1058_RS14715 at 1123.543 kb on + strand, within HMPREF1058_RS14715 at 1123.544 kb on - strand, within HMPREF1058_RS14715 at 1123.544 kb on - strand, within HMPREF1058_RS14715 at 1123.545 kb on + strand, within HMPREF1058_RS14715 at 1123.545 kb on + strand, within HMPREF1058_RS14715 at 1123.668 kb on + strand, within HMPREF1058_RS14715 at 1123.699 kb on - strand, within HMPREF1058_RS14715 at 1123.724 kb on + strand, within HMPREF1058_RS14715 at 1123.755 kb on - strand, within HMPREF1058_RS14715 at 1123.869 kb on + strand, within HMPREF1058_RS14715 at 1123.869 kb on + strand, within HMPREF1058_RS14715 at 1123.909 kb on + strand, within HMPREF1058_RS14715 at 1123.909 kb on + strand, within HMPREF1058_RS14715 at 1123.909 kb on + strand, within HMPREF1058_RS14715 at 1123.911 kb on + strand, within HMPREF1058_RS14715 at 1123.915 kb on + strand, within HMPREF1058_RS14715 at 1124.175 kb on + strand, within HMPREF1058_RS14715 at 1124.175 kb on + strand, within HMPREF1058_RS14715 at 1124.175 kb on + strand, within HMPREF1058_RS14715 at 1124.176 kb on - strand, within HMPREF1058_RS14715 at 1124.390 kb on + strand, within HMPREF1058_RS14715 at 1124.461 kb on - strand at 1124.478 kb on + strand at 1124.519 kb on + strand at 1124.519 kb on + strand at 1124.553 kb on + strand at 1124.586 kb on + strand at 1124.586 kb on + strand at 1124.665 kb on + strand, within HMPREF1058_RS14710 at 1124.666 kb on - strand, within HMPREF1058_RS14710 at 1124.728 kb on + strand, within HMPREF1058_RS14710 at 1124.731 kb on - strand, within HMPREF1058_RS14710 at 1124.731 kb on - strand, within HMPREF1058_RS14710 at 1124.858 kb on - strand, within HMPREF1058_RS14710 at 1124.945 kb on + strand, within HMPREF1058_RS14710 at 1125.098 kb on + strand, within HMPREF1058_RS14710 at 1125.110 kb on - strand, within HMPREF1058_RS14710 at 1125.126 kb on + strand, within HMPREF1058_RS14710 at 1125.126 kb on + strand, within HMPREF1058_RS14710 at 1125.127 kb on - strand, within HMPREF1058_RS14710 at 1125.180 kb on - strand at 1125.181 kb on + strand at 1125.181 kb on + strand at 1125.181 kb on + strand at 1125.239 kb on - strand at 1125.345 kb on - strand at 1125.380 kb on - strand at 1125.380 kb on - strand at 1125.380 kb on - strand at 1125.402 kb on + strand at 1125.402 kb on + strand at 1125.426 kb on + strand, within HMPREF1058_RS14705 at 1125.428 kb on + strand, within HMPREF1058_RS14705 at 1125.428 kb on + strand, within HMPREF1058_RS14705 at 1125.429 kb on - strand, within HMPREF1058_RS14705 at 1125.469 kb on + strand, within HMPREF1058_RS14705 at 1125.469 kb on + strand, within HMPREF1058_RS14705 at 1125.470 kb on - strand, within HMPREF1058_RS14705 at 1125.471 kb on + strand, within HMPREF1058_RS14705 at 1125.472 kb on - strand, within HMPREF1058_RS14705 at 1125.472 kb on - strand, within HMPREF1058_RS14705 at 1125.472 kb on - strand, within HMPREF1058_RS14705 at 1125.474 kb on - strand, within HMPREF1058_RS14705 at 1125.476 kb on + strand, within HMPREF1058_RS14705 at 1125.481 kb on + strand, within HMPREF1058_RS14705 at 1125.482 kb on - strand, within HMPREF1058_RS14705 at 1125.550 kb on + strand, within HMPREF1058_RS14705
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse12; day2 remove 1,122,215 - HMPREF1058_RS14720 0.82 -0.8 1,122,239 + HMPREF1058_RS14720 0.83 +1.1 1,122,268 + HMPREF1058_RS14720 0.84 +1.9 1,122,271 + HMPREF1058_RS14720 0.84 -2.7 1,122,291 + HMPREF1058_RS14720 0.85 +0.1 1,122,296 + HMPREF1058_RS14720 0.85 -2.6 1,122,296 + HMPREF1058_RS14720 0.85 +0.1 1,122,396 - HMPREF1058_RS14720 0.89 -1.2 1,122,396 - HMPREF1058_RS14720 0.89 +0.1 1,122,426 - -1.5 1,122,432 + +1.5 1,122,432 + -0.3 1,122,432 + -2.5 1,122,433 - +0.4 1,122,433 - -0.2 1,122,433 - +2.2 1,122,514 + +1.8 1,122,515 - +0.1 1,122,522 - -3.6 1,122,564 - -0.9 1,122,602 + +1.5 1,122,661 + +0.1 1,122,661 + -0.3 1,122,662 - +0.1 1,122,769 - +0.7 1,122,845 + -0.2 1,122,845 + +1.6 1,122,847 + -1.5 1,122,847 + -0.2 1,122,848 - -0.9 1,122,848 - -0.9 1,122,893 + -1.8 1,122,937 + -0.9 1,122,937 + -2.5 1,122,938 - -1.2 1,122,938 - -0.5 1,122,938 - -0.4 1,122,938 - -1.5 1,122,940 + -1.5 1,122,940 + +0.9 1,122,941 - -2.7 1,122,954 - -3.3 1,123,018 - +0.2 1,123,169 + +0.6 1,123,202 + +1.7 1,123,202 + +1.0 1,123,202 + +1.4 1,123,203 - -1.5 1,123,204 + -0.5 1,123,205 - +0.1 1,123,208 + -0.1 1,123,209 - +2.4 1,123,209 - +2.1 1,123,209 - -3.1 1,123,280 - -0.9 1,123,283 + -0.5 1,123,283 + -1.5 1,123,464 - HMPREF1058_RS14715 0.21 +0.5 1,123,464 - HMPREF1058_RS14715 0.21 -0.9 1,123,543 + HMPREF1058_RS14715 0.26 -0.5 1,123,543 + HMPREF1058_RS14715 0.26 +0.2 1,123,543 + HMPREF1058_RS14715 0.26 -0.9 1,123,543 + HMPREF1058_RS14715 0.26 +1.1 1,123,543 + HMPREF1058_RS14715 0.26 +1.9 1,123,544 - HMPREF1058_RS14715 0.26 -0.9 1,123,544 - HMPREF1058_RS14715 0.26 -1.9 1,123,545 + HMPREF1058_RS14715 0.26 -3.3 1,123,545 + HMPREF1058_RS14715 0.26 +0.6 1,123,668 + HMPREF1058_RS14715 0.35 -0.9 1,123,699 - HMPREF1058_RS14715 0.38 -2.7 1,123,724 + HMPREF1058_RS14715 0.40 +0.1 1,123,755 - HMPREF1058_RS14715 0.42 -3.8 1,123,869 + HMPREF1058_RS14715 0.50 -1.6 1,123,869 + HMPREF1058_RS14715 0.50 -1.9 1,123,909 + HMPREF1058_RS14715 0.53 +0.9 1,123,909 + HMPREF1058_RS14715 0.53 -1.6 1,123,909 + HMPREF1058_RS14715 0.53 -1.5 1,123,911 + HMPREF1058_RS14715 0.53 -0.4 1,123,915 + HMPREF1058_RS14715 0.54 -0.9 1,124,175 + HMPREF1058_RS14715 0.73 -1.5 1,124,175 + HMPREF1058_RS14715 0.73 -1.8 1,124,175 + HMPREF1058_RS14715 0.73 -3.9 1,124,176 - HMPREF1058_RS14715 0.73 -1.3 1,124,390 + HMPREF1058_RS14715 0.88 -0.6 1,124,461 - +0.1 1,124,478 + -0.2 1,124,519 + +0.4 1,124,519 + -0.1 1,124,553 + -3.6 1,124,586 + +1.5 1,124,586 + +1.6 1,124,665 + HMPREF1058_RS14710 0.12 -0.9 1,124,666 - HMPREF1058_RS14710 0.12 +1.5 1,124,728 + HMPREF1058_RS14710 0.21 +1.1 1,124,731 - HMPREF1058_RS14710 0.22 -0.1 1,124,731 - HMPREF1058_RS14710 0.22 -1.0 1,124,858 - HMPREF1058_RS14710 0.41 -2.5 1,124,945 + HMPREF1058_RS14710 0.55 +1.8 1,125,098 + HMPREF1058_RS14710 0.78 -1.5 1,125,110 - HMPREF1058_RS14710 0.80 -2.9 1,125,126 + HMPREF1058_RS14710 0.82 -0.3 1,125,126 + HMPREF1058_RS14710 0.82 -1.9 1,125,127 - HMPREF1058_RS14710 0.82 +0.7 1,125,180 - -2.7 1,125,181 + -1.1 1,125,181 + +0.2 1,125,181 + +0.3 1,125,239 - +1.1 1,125,345 - -3.5 1,125,380 - +0.4 1,125,380 - -0.6 1,125,380 - -0.7 1,125,402 + -0.0 1,125,402 + -1.4 1,125,426 + HMPREF1058_RS14705 0.11 +0.7 1,125,428 + HMPREF1058_RS14705 0.11 +0.1 1,125,428 + HMPREF1058_RS14705 0.11 +1.5 1,125,429 - HMPREF1058_RS14705 0.11 +0.7 1,125,469 + HMPREF1058_RS14705 0.14 -0.9 1,125,469 + HMPREF1058_RS14705 0.14 -4.7 1,125,470 - HMPREF1058_RS14705 0.14 -1.2 1,125,471 + HMPREF1058_RS14705 0.14 +0.9 1,125,472 - HMPREF1058_RS14705 0.14 -1.2 1,125,472 - HMPREF1058_RS14705 0.14 -1.9 1,125,472 - HMPREF1058_RS14705 0.14 -2.7 1,125,474 - HMPREF1058_RS14705 0.14 +0.1 1,125,476 + HMPREF1058_RS14705 0.14 -1.2 1,125,481 + HMPREF1058_RS14705 0.14 +1.4 1,125,482 - HMPREF1058_RS14705 0.14 -1.1 1,125,550 + HMPREF1058_RS14705 0.18 +0.9
Or see this region's nucleotide sequence