Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10230 and HMPREF1058_RS10225 are separated by 103 nucleotides HMPREF1058_RS10225 and HMPREF1058_RS10220 are separated by 36 nucleotides HMPREF1058_RS10220 and HMPREF1058_RS10215 overlap by 23 nucleotides HMPREF1058_RS10215 and HMPREF1058_RS10210 are separated by 1 nucleotides HMPREF1058_RS10210 and HMPREF1058_RS10205 are separated by 26 nucleotides HMPREF1058_RS10205 and HMPREF1058_RS10200 overlap by 4 nucleotides
HMPREF1058_RS10230: HMPREF1058_RS10230 - hypothetical protein, at 705,425 to 705,892
_RS10230
HMPREF1058_RS10225: HMPREF1058_RS10225 - hypothetical protein, at 705,996 to 706,235
_RS10225
HMPREF1058_RS10220: HMPREF1058_RS10220 - hypothetical protein, at 706,272 to 706,883
_RS10220
HMPREF1058_RS10215: HMPREF1058_RS10215 - DUF4417 domain-containing protein, at 706,861 to 707,979
_RS10215
HMPREF1058_RS10210: HMPREF1058_RS10210 - hypothetical protein, at 707,981 to 708,391
_RS10210
HMPREF1058_RS10205: HMPREF1058_RS10205 - hypothetical protein, at 708,418 to 708,858
_RS10205
HMPREF1058_RS10200: HMPREF1058_RS10200 - hypothetical protein, at 708,855 to 709,247
_RS10200
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 705.868 kb on + strand at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.080 kb on + strand, within HMPREF1058_RS10225 at 706.295 kb on + strand at 706.319 kb on + strand at 706.346 kb on + strand, within HMPREF1058_RS10220 at 706.631 kb on + strand, within HMPREF1058_RS10220 at 706.712 kb on + strand, within HMPREF1058_RS10220 at 706.712 kb on + strand, within HMPREF1058_RS10220 at 706.764 kb on + strand, within HMPREF1058_RS10220 at 706.823 kb on + strand at 706.831 kb on + strand at 706.831 kb on + strand at 706.899 kb on + strand at 706.908 kb on + strand at 706.935 kb on + strand at 707.057 kb on + strand, within HMPREF1058_RS10215 at 707.108 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.144 kb on + strand, within HMPREF1058_RS10215 at 707.229 kb on + strand, within HMPREF1058_RS10215 at 707.330 kb on + strand, within HMPREF1058_RS10215 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.459 kb on + strand, within HMPREF1058_RS10215 at 707.604 kb on + strand, within HMPREF1058_RS10215 at 707.704 kb on + strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.705 kb on - strand, within HMPREF1058_RS10215 at 707.807 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215 at 707.811 kb on - strand, within HMPREF1058_RS10215 at 707.894 kb on - strand at 708.124 kb on + strand, within HMPREF1058_RS10210 at 708.125 kb on - strand, within HMPREF1058_RS10210 at 708.126 kb on + strand, within HMPREF1058_RS10210 at 708.149 kb on - strand, within HMPREF1058_RS10210 at 708.153 kb on + strand, within HMPREF1058_RS10210 at 708.154 kb on - strand, within HMPREF1058_RS10210 at 708.159 kb on + strand, within HMPREF1058_RS10210 at 708.159 kb on + strand, within HMPREF1058_RS10210 at 708.160 kb on - strand, within HMPREF1058_RS10210 at 708.163 kb on + strand, within HMPREF1058_RS10210 at 708.177 kb on - strand, within HMPREF1058_RS10210 at 708.177 kb on - strand, within HMPREF1058_RS10210 at 708.219 kb on + strand, within HMPREF1058_RS10210 at 708.222 kb on - strand at 708.255 kb on + strand, within HMPREF1058_RS10210 at 708.314 kb on + strand, within HMPREF1058_RS10210 at 708.314 kb on + strand, within HMPREF1058_RS10210 at 708.314 kb on + strand, within HMPREF1058_RS10210 at 708.319 kb on + strand, within HMPREF1058_RS10210 at 708.319 kb on + strand, within HMPREF1058_RS10210 at 708.325 kb on + strand, within HMPREF1058_RS10210 at 708.326 kb on - strand, within HMPREF1058_RS10210 at 708.373 kb on + strand at 708.434 kb on - strand at 708.434 kb on - strand at 708.450 kb on + strand at 708.585 kb on + strand, within HMPREF1058_RS10205 at 708.586 kb on - strand, within HMPREF1058_RS10205 at 708.608 kb on - strand, within HMPREF1058_RS10205 at 708.766 kb on - strand, within HMPREF1058_RS10205 at 708.826 kb on - strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.847 kb on + strand at 708.851 kb on + strand at 708.851 kb on + strand at 708.851 kb on + strand at 708.852 kb on - strand at 708.925 kb on - strand, within HMPREF1058_RS10200
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse11; day2 remove 705,868 + -1.7 706,080 + HMPREF1058_RS10225 0.35 -0.9 706,080 + HMPREF1058_RS10225 0.35 -1.3 706,295 + +0.7 706,319 + +1.2 706,346 + HMPREF1058_RS10220 0.12 +1.8 706,631 + HMPREF1058_RS10220 0.59 -1.5 706,712 + HMPREF1058_RS10220 0.72 -1.1 706,712 + HMPREF1058_RS10220 0.72 +0.2 706,764 + HMPREF1058_RS10220 0.80 +0.1 706,823 + -2.3 706,831 + -3.3 706,831 + +0.6 706,899 + -0.8 706,908 + +2.0 706,935 + +0.4 707,057 + HMPREF1058_RS10215 0.18 +0.2 707,108 + HMPREF1058_RS10215 0.22 +2.1 707,144 + HMPREF1058_RS10215 0.25 -0.1 707,144 + HMPREF1058_RS10215 0.25 -2.1 707,144 + HMPREF1058_RS10215 0.25 +0.4 707,144 + HMPREF1058_RS10215 0.25 +1.5 707,229 + HMPREF1058_RS10215 0.33 -1.2 707,330 + HMPREF1058_RS10215 0.42 -2.4 707,459 + HMPREF1058_RS10215 0.53 -0.8 707,459 + HMPREF1058_RS10215 0.53 -0.2 707,604 + HMPREF1058_RS10215 0.66 -3.3 707,704 + HMPREF1058_RS10215 0.75 -0.4 707,705 - HMPREF1058_RS10215 0.75 -1.7 707,705 - HMPREF1058_RS10215 0.75 -2.1 707,807 - HMPREF1058_RS10215 0.85 -2.5 707,811 - HMPREF1058_RS10215 0.85 -3.1 707,811 - HMPREF1058_RS10215 0.85 -2.5 707,894 - -0.1 708,124 + HMPREF1058_RS10210 0.35 +1.3 708,125 - HMPREF1058_RS10210 0.35 -1.1 708,126 + HMPREF1058_RS10210 0.35 +0.2 708,149 - HMPREF1058_RS10210 0.41 -2.5 708,153 + HMPREF1058_RS10210 0.42 -0.9 708,154 - HMPREF1058_RS10210 0.42 -0.9 708,159 + HMPREF1058_RS10210 0.43 +0.8 708,159 + HMPREF1058_RS10210 0.43 +0.0 708,160 - HMPREF1058_RS10210 0.44 -3.0 708,163 + HMPREF1058_RS10210 0.44 +0.9 708,177 - HMPREF1058_RS10210 0.48 -2.5 708,177 - HMPREF1058_RS10210 0.48 -3.0 708,219 + HMPREF1058_RS10210 0.58 -0.3 708,222 - -0.1 708,255 + HMPREF1058_RS10210 0.67 -0.1 708,314 + HMPREF1058_RS10210 0.81 -1.7 708,314 + HMPREF1058_RS10210 0.81 +1.2 708,314 + HMPREF1058_RS10210 0.81 +0.9 708,319 + HMPREF1058_RS10210 0.82 +1.3 708,319 + HMPREF1058_RS10210 0.82 +1.1 708,325 + HMPREF1058_RS10210 0.84 -1.0 708,326 - HMPREF1058_RS10210 0.84 -1.7 708,373 + -0.8 708,434 - -0.1 708,434 - +1.0 708,450 + -0.1 708,585 + HMPREF1058_RS10205 0.38 +0.9 708,586 - HMPREF1058_RS10205 0.38 -1.7 708,608 - HMPREF1058_RS10205 0.43 -1.0 708,766 - HMPREF1058_RS10205 0.79 -3.3 708,826 - +0.3 708,829 + +0.7 708,829 + -0.1 708,829 + -3.7 708,829 + +1.1 708,829 + -0.7 708,829 + -2.3 708,830 - +1.3 708,830 - -0.1 708,830 - -0.3 708,830 - +0.7 708,847 + +2.2 708,851 + -2.8 708,851 + +0.7 708,851 + +1.9 708,852 - -0.6 708,925 - HMPREF1058_RS10200 0.18 -0.5
Or see this region's nucleotide sequence