Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04815 and HMPREF1058_RS04810 are separated by 84 nucleotides HMPREF1058_RS04810 and HMPREF1058_RS04805 overlap by 4 nucleotides HMPREF1058_RS04805 and HMPREF1058_RS04800 overlap by 11 nucleotides
HMPREF1058_RS04815: HMPREF1058_RS04815 - hypothetical protein, at 309,218 to 310,216
_RS04815
HMPREF1058_RS04810: HMPREF1058_RS04810 - hypothetical protein, at 310,301 to 314,413
_RS04810
HMPREF1058_RS04805: HMPREF1058_RS04805 - hypothetical protein, at 314,410 to 314,895
_RS04805
HMPREF1058_RS04800: HMPREF1058_RS04800 - ankyrin repeat domain-containing protein, at 314,885 to 316,462
_RS04800
Position (kb) 310
311
312
313
314
315 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 309.326 kb on + strand, within HMPREF1058_RS04815 at 309.326 kb on + strand, within HMPREF1058_RS04815 at 309.385 kb on + strand, within HMPREF1058_RS04815 at 309.385 kb on + strand, within HMPREF1058_RS04815 at 309.522 kb on - strand, within HMPREF1058_RS04815 at 309.524 kb on + strand, within HMPREF1058_RS04815 at 309.527 kb on + strand, within HMPREF1058_RS04815 at 309.528 kb on - strand, within HMPREF1058_RS04815 at 309.583 kb on + strand, within HMPREF1058_RS04815 at 309.584 kb on - strand, within HMPREF1058_RS04815 at 309.627 kb on + strand, within HMPREF1058_RS04815 at 309.627 kb on + strand, within HMPREF1058_RS04815 at 309.641 kb on - strand, within HMPREF1058_RS04815 at 309.658 kb on + strand, within HMPREF1058_RS04815 at 309.659 kb on - strand, within HMPREF1058_RS04815 at 309.659 kb on - strand, within HMPREF1058_RS04815 at 309.664 kb on + strand, within HMPREF1058_RS04815 at 309.867 kb on + strand, within HMPREF1058_RS04815 at 309.868 kb on - strand, within HMPREF1058_RS04815 at 309.868 kb on - strand, within HMPREF1058_RS04815 at 309.874 kb on + strand, within HMPREF1058_RS04815 at 309.874 kb on + strand, within HMPREF1058_RS04815 at 309.875 kb on - strand, within HMPREF1058_RS04815 at 309.875 kb on - strand, within HMPREF1058_RS04815 at 309.972 kb on - strand, within HMPREF1058_RS04815 at 309.973 kb on + strand, within HMPREF1058_RS04815 at 309.974 kb on - strand, within HMPREF1058_RS04815 at 309.974 kb on - strand, within HMPREF1058_RS04815 at 309.975 kb on + strand, within HMPREF1058_RS04815 at 309.975 kb on + strand, within HMPREF1058_RS04815 at 309.976 kb on - strand, within HMPREF1058_RS04815 at 309.977 kb on + strand, within HMPREF1058_RS04815 at 309.978 kb on - strand, within HMPREF1058_RS04815 at 309.987 kb on - strand, within HMPREF1058_RS04815 at 310.068 kb on + strand, within HMPREF1058_RS04815 at 310.068 kb on + strand, within HMPREF1058_RS04815 at 310.160 kb on + strand at 310.160 kb on + strand at 310.160 kb on + strand at 310.160 kb on + strand at 310.161 kb on - strand at 310.161 kb on - strand at 310.252 kb on - strand at 310.257 kb on - strand at 310.286 kb on + strand at 310.287 kb on - strand at 310.316 kb on - strand at 310.316 kb on - strand at 310.316 kb on - strand at 310.316 kb on - strand at 310.338 kb on + strand at 310.732 kb on + strand, within HMPREF1058_RS04810 at 310.780 kb on + strand, within HMPREF1058_RS04810 at 310.781 kb on - strand, within HMPREF1058_RS04810 at 310.784 kb on + strand, within HMPREF1058_RS04810 at 310.784 kb on + strand, within HMPREF1058_RS04810 at 310.785 kb on - strand, within HMPREF1058_RS04810 at 310.785 kb on - strand, within HMPREF1058_RS04810 at 310.785 kb on - strand, within HMPREF1058_RS04810 at 310.894 kb on + strand, within HMPREF1058_RS04810 at 310.894 kb on + strand, within HMPREF1058_RS04810 at 310.895 kb on - strand, within HMPREF1058_RS04810 at 311.016 kb on - strand, within HMPREF1058_RS04810 at 311.089 kb on + strand, within HMPREF1058_RS04810 at 311.090 kb on - strand, within HMPREF1058_RS04810 at 311.094 kb on - strand, within HMPREF1058_RS04810 at 311.217 kb on + strand, within HMPREF1058_RS04810 at 311.223 kb on - strand, within HMPREF1058_RS04810 at 311.440 kb on + strand, within HMPREF1058_RS04810 at 311.449 kb on + strand, within HMPREF1058_RS04810 at 311.496 kb on - strand, within HMPREF1058_RS04810 at 311.526 kb on + strand, within HMPREF1058_RS04810 at 311.528 kb on + strand, within HMPREF1058_RS04810 at 311.530 kb on + strand, within HMPREF1058_RS04810 at 311.597 kb on + strand, within HMPREF1058_RS04810 at 311.619 kb on - strand, within HMPREF1058_RS04810 at 311.619 kb on - strand, within HMPREF1058_RS04810 at 311.620 kb on + strand, within HMPREF1058_RS04810 at 311.621 kb on - strand, within HMPREF1058_RS04810 at 311.648 kb on + strand, within HMPREF1058_RS04810 at 311.651 kb on - strand, within HMPREF1058_RS04810 at 311.651 kb on - strand, within HMPREF1058_RS04810 at 311.762 kb on + strand, within HMPREF1058_RS04810 at 311.776 kb on + strand, within HMPREF1058_RS04810 at 311.787 kb on + strand, within HMPREF1058_RS04810 at 311.787 kb on + strand, within HMPREF1058_RS04810 at 311.787 kb on + strand, within HMPREF1058_RS04810 at 311.788 kb on - strand, within HMPREF1058_RS04810 at 311.788 kb on - strand, within HMPREF1058_RS04810 at 311.969 kb on - strand, within HMPREF1058_RS04810 at 312.011 kb on - strand, within HMPREF1058_RS04810 at 312.014 kb on + strand, within HMPREF1058_RS04810 at 312.138 kb on + strand, within HMPREF1058_RS04810 at 312.197 kb on + strand, within HMPREF1058_RS04810 at 312.200 kb on - strand, within HMPREF1058_RS04810 at 312.369 kb on - strand, within HMPREF1058_RS04810 at 312.378 kb on + strand, within HMPREF1058_RS04810 at 312.378 kb on + strand, within HMPREF1058_RS04810 at 312.379 kb on - strand, within HMPREF1058_RS04810 at 312.386 kb on - strand, within HMPREF1058_RS04810 at 312.386 kb on - strand, within HMPREF1058_RS04810 at 312.504 kb on + strand, within HMPREF1058_RS04810 at 312.505 kb on - strand, within HMPREF1058_RS04810 at 312.505 kb on - strand, within HMPREF1058_RS04810 at 312.534 kb on + strand, within HMPREF1058_RS04810 at 312.534 kb on + strand, within HMPREF1058_RS04810 at 312.534 kb on + strand, within HMPREF1058_RS04810 at 312.538 kb on + strand, within HMPREF1058_RS04810 at 312.539 kb on - strand, within HMPREF1058_RS04810 at 312.593 kb on - strand, within HMPREF1058_RS04810 at 312.638 kb on + strand, within HMPREF1058_RS04810 at 312.641 kb on - strand, within HMPREF1058_RS04810 at 312.698 kb on + strand, within HMPREF1058_RS04810 at 312.718 kb on + strand, within HMPREF1058_RS04810 at 312.718 kb on + strand, within HMPREF1058_RS04810 at 312.719 kb on - strand, within HMPREF1058_RS04810 at 312.719 kb on - strand, within HMPREF1058_RS04810 at 312.795 kb on - strand, within HMPREF1058_RS04810 at 312.921 kb on - strand, within HMPREF1058_RS04810 at 313.268 kb on - strand, within HMPREF1058_RS04810 at 313.306 kb on - strand, within HMPREF1058_RS04810 at 313.310 kb on - strand, within HMPREF1058_RS04810 at 313.310 kb on - strand, within HMPREF1058_RS04810 at 313.310 kb on - strand, within HMPREF1058_RS04810 at 313.417 kb on + strand, within HMPREF1058_RS04810 at 313.430 kb on + strand, within HMPREF1058_RS04810 at 313.586 kb on + strand, within HMPREF1058_RS04810 at 313.591 kb on + strand, within HMPREF1058_RS04810 at 313.768 kb on + strand, within HMPREF1058_RS04810 at 313.768 kb on + strand, within HMPREF1058_RS04810 at 314.153 kb on - strand at 314.213 kb on - strand at 314.320 kb on + strand at 314.377 kb on - strand at 314.417 kb on + strand at 314.418 kb on - strand at 314.593 kb on + strand, within HMPREF1058_RS04805 at 314.722 kb on - strand, within HMPREF1058_RS04805 at 314.754 kb on + strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.760 kb on - strand, within HMPREF1058_RS04805 at 314.804 kb on - strand, within HMPREF1058_RS04805 at 314.845 kb on + strand, within HMPREF1058_RS04805 at 315.010 kb on + strand at 315.013 kb on - strand at 315.020 kb on + strand at 315.020 kb on + strand at 315.034 kb on - strand at 315.089 kb on - strand, within HMPREF1058_RS04800
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse9; day2 remove 309,326 + HMPREF1058_RS04815 0.11 -1.0 309,326 + HMPREF1058_RS04815 0.11 -0.8 309,385 + HMPREF1058_RS04815 0.17 -1.6 309,385 + HMPREF1058_RS04815 0.17 -1.6 309,522 - HMPREF1058_RS04815 0.30 -1.0 309,524 + HMPREF1058_RS04815 0.31 -0.1 309,527 + HMPREF1058_RS04815 0.31 +1.1 309,528 - HMPREF1058_RS04815 0.31 -4.3 309,583 + HMPREF1058_RS04815 0.37 -1.0 309,584 - HMPREF1058_RS04815 0.37 +0.1 309,627 + HMPREF1058_RS04815 0.41 +0.6 309,627 + HMPREF1058_RS04815 0.41 -0.3 309,641 - HMPREF1058_RS04815 0.42 -4.4 309,658 + HMPREF1058_RS04815 0.44 -1.0 309,659 - HMPREF1058_RS04815 0.44 +0.8 309,659 - HMPREF1058_RS04815 0.44 -0.6 309,664 + HMPREF1058_RS04815 0.45 -2.0 309,867 + HMPREF1058_RS04815 0.65 -1.9 309,868 - HMPREF1058_RS04815 0.65 -1.0 309,868 - HMPREF1058_RS04815 0.65 +1.0 309,874 + HMPREF1058_RS04815 0.66 -1.3 309,874 + HMPREF1058_RS04815 0.66 -1.6 309,875 - HMPREF1058_RS04815 0.66 -3.2 309,875 - HMPREF1058_RS04815 0.66 +1.9 309,972 - HMPREF1058_RS04815 0.75 +0.1 309,973 + HMPREF1058_RS04815 0.76 -2.3 309,974 - HMPREF1058_RS04815 0.76 +0.7 309,974 - HMPREF1058_RS04815 0.76 -1.0 309,975 + HMPREF1058_RS04815 0.76 +0.5 309,975 + HMPREF1058_RS04815 0.76 -2.6 309,976 - HMPREF1058_RS04815 0.76 +0.4 309,977 + HMPREF1058_RS04815 0.76 -0.0 309,978 - HMPREF1058_RS04815 0.76 +0.9 309,987 - HMPREF1058_RS04815 0.77 -3.0 310,068 + HMPREF1058_RS04815 0.85 +4.0 310,068 + HMPREF1058_RS04815 0.85 +0.2 310,160 + +0.4 310,160 + -0.2 310,160 + +1.0 310,160 + +1.2 310,161 - -0.6 310,161 - +0.3 310,252 - +0.7 310,257 - +3.0 310,286 + -1.6 310,287 - +0.6 310,316 - -2.6 310,316 - +0.5 310,316 - +0.3 310,316 - +1.3 310,338 + +2.3 310,732 + HMPREF1058_RS04810 0.10 +0.1 310,780 + HMPREF1058_RS04810 0.12 -3.0 310,781 - HMPREF1058_RS04810 0.12 +0.4 310,784 + HMPREF1058_RS04810 0.12 -1.9 310,784 + HMPREF1058_RS04810 0.12 +2.0 310,785 - HMPREF1058_RS04810 0.12 +3.8 310,785 - HMPREF1058_RS04810 0.12 -1.6 310,785 - HMPREF1058_RS04810 0.12 +2.0 310,894 + HMPREF1058_RS04810 0.14 +0.3 310,894 + HMPREF1058_RS04810 0.14 +2.2 310,895 - HMPREF1058_RS04810 0.14 -2.6 311,016 - HMPREF1058_RS04810 0.17 +0.5 311,089 + HMPREF1058_RS04810 0.19 -0.0 311,090 - HMPREF1058_RS04810 0.19 -0.2 311,094 - HMPREF1058_RS04810 0.19 -1.4 311,217 + HMPREF1058_RS04810 0.22 -2.3 311,223 - HMPREF1058_RS04810 0.22 +1.0 311,440 + HMPREF1058_RS04810 0.28 +0.6 311,449 + HMPREF1058_RS04810 0.28 +1.6 311,496 - HMPREF1058_RS04810 0.29 +1.3 311,526 + HMPREF1058_RS04810 0.30 -2.3 311,528 + HMPREF1058_RS04810 0.30 -3.6 311,530 + HMPREF1058_RS04810 0.30 -1.6 311,597 + HMPREF1058_RS04810 0.32 +0.4 311,619 - HMPREF1058_RS04810 0.32 -3.0 311,619 - HMPREF1058_RS04810 0.32 +0.3 311,620 + HMPREF1058_RS04810 0.32 -0.2 311,621 - HMPREF1058_RS04810 0.32 -0.0 311,648 + HMPREF1058_RS04810 0.33 -1.0 311,651 - HMPREF1058_RS04810 0.33 -2.3 311,651 - HMPREF1058_RS04810 0.33 -1.6 311,762 + HMPREF1058_RS04810 0.36 -3.0 311,776 + HMPREF1058_RS04810 0.36 -1.0 311,787 + HMPREF1058_RS04810 0.36 -0.6 311,787 + HMPREF1058_RS04810 0.36 -1.3 311,787 + HMPREF1058_RS04810 0.36 -1.0 311,788 - HMPREF1058_RS04810 0.36 -0.4 311,788 - HMPREF1058_RS04810 0.36 -0.0 311,969 - HMPREF1058_RS04810 0.41 -2.8 312,011 - HMPREF1058_RS04810 0.42 -1.4 312,014 + HMPREF1058_RS04810 0.42 -2.3 312,138 + HMPREF1058_RS04810 0.45 -3.0 312,197 + HMPREF1058_RS04810 0.46 +4.2 312,200 - HMPREF1058_RS04810 0.46 -0.0 312,369 - HMPREF1058_RS04810 0.50 +1.8 312,378 + HMPREF1058_RS04810 0.50 -0.0 312,378 + HMPREF1058_RS04810 0.50 +0.3 312,379 - HMPREF1058_RS04810 0.51 -0.0 312,386 - HMPREF1058_RS04810 0.51 -1.6 312,386 - HMPREF1058_RS04810 0.51 +1.0 312,504 + HMPREF1058_RS04810 0.54 -0.0 312,505 - HMPREF1058_RS04810 0.54 -0.3 312,505 - HMPREF1058_RS04810 0.54 +2.1 312,534 + HMPREF1058_RS04810 0.54 +0.3 312,534 + HMPREF1058_RS04810 0.54 -3.0 312,534 + HMPREF1058_RS04810 0.54 +0.8 312,538 + HMPREF1058_RS04810 0.54 -0.0 312,539 - HMPREF1058_RS04810 0.54 +2.8 312,593 - HMPREF1058_RS04810 0.56 -1.6 312,638 + HMPREF1058_RS04810 0.57 +1.1 312,641 - HMPREF1058_RS04810 0.57 -0.0 312,698 + HMPREF1058_RS04810 0.58 -2.0 312,718 + HMPREF1058_RS04810 0.59 -0.0 312,718 + HMPREF1058_RS04810 0.59 -0.2 312,719 - HMPREF1058_RS04810 0.59 +2.6 312,719 - HMPREF1058_RS04810 0.59 +0.2 312,795 - HMPREF1058_RS04810 0.61 +0.7 312,921 - HMPREF1058_RS04810 0.64 +1.0 313,268 - HMPREF1058_RS04810 0.72 +1.3 313,306 - HMPREF1058_RS04810 0.73 -2.3 313,310 - HMPREF1058_RS04810 0.73 -2.0 313,310 - HMPREF1058_RS04810 0.73 -0.7 313,310 - HMPREF1058_RS04810 0.73 +1.3 313,417 + HMPREF1058_RS04810 0.76 +1.7 313,430 + HMPREF1058_RS04810 0.76 +0.3 313,586 + HMPREF1058_RS04810 0.80 -0.7 313,591 + HMPREF1058_RS04810 0.80 -2.0 313,768 + HMPREF1058_RS04810 0.84 -3.2 313,768 + HMPREF1058_RS04810 0.84 -1.0 314,153 - +1.9 314,213 - -0.7 314,320 + -0.0 314,377 - -0.0 314,417 + -2.8 314,418 - +4.5 314,593 + HMPREF1058_RS04805 0.38 -0.0 314,722 - HMPREF1058_RS04805 0.64 +1.4 314,754 + HMPREF1058_RS04805 0.71 -2.0 314,755 - HMPREF1058_RS04805 0.71 -3.0 314,755 - HMPREF1058_RS04805 0.71 +0.1 314,760 - HMPREF1058_RS04805 0.72 -0.2 314,804 - HMPREF1058_RS04805 0.81 +4.2 314,845 + HMPREF1058_RS04805 0.90 -1.0 315,010 + -1.2 315,013 - +2.5 315,020 + -0.0 315,020 + -2.0 315,034 - -0.8 315,089 - HMPREF1058_RS04800 0.13 -2.0
Or see this region's nucleotide sequence