Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03445 and HMPREF1058_RS21110 are separated by 179 nucleotides HMPREF1058_RS21110 and HMPREF1058_RS03435 are separated by 286 nucleotides HMPREF1058_RS03435 and HMPREF1058_RS21670 are separated by 74 nucleotides HMPREF1058_RS21670 and HMPREF1058_RS03430 overlap by 4 nucleotides
HMPREF1058_RS03445: HMPREF1058_RS03445 - hypothetical protein, at 278,426 to 280,690
_RS03445
HMPREF1058_RS21110: HMPREF1058_RS21110 - DUF4248 domain-containing protein, at 280,870 to 281,076
_RS21110
HMPREF1058_RS03435: HMPREF1058_RS03435 - DNA-binding protein, at 281,363 to 281,869
_RS03435
HMPREF1058_RS21670: HMPREF1058_RS21670 - smalltalk protein, at 281,944 to 282,063
_RS21670
HMPREF1058_RS03430: HMPREF1058_RS03430 - N-acetylmuramoyl-L-alanine amidase, at 282,060 to 282,572
_RS03430
Position (kb) 280
281
282 Strain fitness (log2 ratio) -1
0
1
2
3 at 279.929 kb on - strand, within HMPREF1058_RS03445 at 279.957 kb on - strand, within HMPREF1058_RS03445 at 280.149 kb on + strand, within HMPREF1058_RS03445 at 280.239 kb on + strand, within HMPREF1058_RS03445 at 280.240 kb on - strand, within HMPREF1058_RS03445 at 280.449 kb on - strand, within HMPREF1058_RS03445 at 280.551 kb on + strand at 280.572 kb on - strand at 280.605 kb on + strand at 280.735 kb on + strand at 280.737 kb on + strand at 280.745 kb on + strand at 280.752 kb on + strand at 280.775 kb on - strand at 280.778 kb on - strand at 280.791 kb on - strand at 280.793 kb on - strand at 280.795 kb on - strand at 280.802 kb on - strand at 280.804 kb on - strand at 280.804 kb on - strand at 281.112 kb on + strand at 281.122 kb on + strand at 281.188 kb on + strand at 281.210 kb on + strand at 281.210 kb on + strand at 281.211 kb on - strand at 281.348 kb on - strand at 281.380 kb on + strand at 281.444 kb on + strand, within HMPREF1058_RS03435 at 281.504 kb on + strand, within HMPREF1058_RS03435 at 281.522 kb on + strand, within HMPREF1058_RS03435 at 281.523 kb on - strand, within HMPREF1058_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2 remove 279,929 - HMPREF1058_RS03445 0.66 +0.3 279,957 - HMPREF1058_RS03445 0.68 -0.3 280,149 + HMPREF1058_RS03445 0.76 +1.6 280,239 + HMPREF1058_RS03445 0.80 -0.1 280,240 - HMPREF1058_RS03445 0.80 +1.0 280,449 - HMPREF1058_RS03445 0.89 -0.7 280,551 + +3.3 280,572 - -1.3 280,605 + +0.3 280,735 + -0.5 280,737 + -0.1 280,745 + +0.3 280,752 + -1.3 280,775 - +1.3 280,778 - +1.8 280,791 - +1.6 280,793 - +0.4 280,795 - +1.0 280,802 - +2.4 280,804 - -0.8 280,804 - +1.8 281,112 + +1.0 281,122 + +0.3 281,188 + -0.1 281,210 + +0.1 281,210 + -1.0 281,211 - +0.7 281,348 - +1.3 281,380 + +1.7 281,444 + HMPREF1058_RS03435 0.16 +0.1 281,504 + HMPREF1058_RS03435 0.28 +1.5 281,522 + HMPREF1058_RS03435 0.31 +0.8 281,523 - HMPREF1058_RS03435 0.32 -0.2
Or see this region's nucleotide sequence