Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16145

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16150 and HMPREF1058_RS16145 are separated by 228 nucleotidesHMPREF1058_RS16145 and HMPREF1058_RS16140 are separated by 24 nucleotides HMPREF1058_RS16150: HMPREF1058_RS16150 - glycosyltransferase, at 743,913 to 744,956 _RS16150 HMPREF1058_RS16145: HMPREF1058_RS16145 - glycosyl transferase family 32, at 745,185 to 745,952 _RS16145 HMPREF1058_RS16140: HMPREF1058_RS16140 - hypothetical protein, at 745,977 to 746,957 _RS16140 Position (kb) 745 746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 744.237 kb on + strand, within HMPREF1058_RS16150at 744.251 kb on + strand, within HMPREF1058_RS16150at 744.251 kb on + strand, within HMPREF1058_RS16150at 744.252 kb on - strand, within HMPREF1058_RS16150at 744.253 kb on + strand, within HMPREF1058_RS16150at 744.299 kb on - strand, within HMPREF1058_RS16150at 744.337 kb on + strand, within HMPREF1058_RS16150at 744.369 kb on + strand, within HMPREF1058_RS16150at 744.401 kb on + strand, within HMPREF1058_RS16150at 744.402 kb on - strand, within HMPREF1058_RS16150at 744.408 kb on + strand, within HMPREF1058_RS16150at 744.409 kb on - strand, within HMPREF1058_RS16150at 744.425 kb on - strand, within HMPREF1058_RS16150at 744.434 kb on + strand, within HMPREF1058_RS16150at 744.451 kb on + strand, within HMPREF1058_RS16150at 744.451 kb on + strand, within HMPREF1058_RS16150at 744.486 kb on + strand, within HMPREF1058_RS16150at 744.486 kb on + strand, within HMPREF1058_RS16150at 744.486 kb on + strand, within HMPREF1058_RS16150at 744.491 kb on + strand, within HMPREF1058_RS16150at 744.491 kb on + strand, within HMPREF1058_RS16150at 744.499 kb on - strand, within HMPREF1058_RS16150at 744.562 kb on - strand, within HMPREF1058_RS16150at 744.584 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.604 kb on - strand, within HMPREF1058_RS16150at 744.649 kb on + strand, within HMPREF1058_RS16150at 744.649 kb on + strand, within HMPREF1058_RS16150at 744.650 kb on - strand, within HMPREF1058_RS16150at 744.791 kb on - strand, within HMPREF1058_RS16150at 744.841 kb on - strand, within HMPREF1058_RS16150at 744.859 kb on - strandat 744.882 kb on + strandat 744.882 kb on + strandat 744.882 kb on + strandat 744.883 kb on - strandat 744.890 kb on + strandat 744.891 kb on - strandat 744.913 kb on + strandat 744.980 kb on - strandat 744.986 kb on + strandat 745.050 kb on + strandat 745.051 kb on - strandat 745.057 kb on - strandat 745.068 kb on + strandat 745.125 kb on + strandat 745.125 kb on + strandat 745.175 kb on + strandat 745.238 kb on + strandat 745.288 kb on + strand, within HMPREF1058_RS16145at 745.328 kb on - strand, within HMPREF1058_RS16145at 745.328 kb on - strand, within HMPREF1058_RS16145at 745.350 kb on + strand, within HMPREF1058_RS16145at 745.449 kb on - strand, within HMPREF1058_RS16145at 745.476 kb on + strand, within HMPREF1058_RS16145at 745.477 kb on - strand, within HMPREF1058_RS16145at 745.579 kb on - strand, within HMPREF1058_RS16145at 745.640 kb on - strand, within HMPREF1058_RS16145at 745.640 kb on - strand, within HMPREF1058_RS16145at 745.679 kb on + strand, within HMPREF1058_RS16145at 745.742 kb on - strand, within HMPREF1058_RS16145at 745.752 kb on - strand, within HMPREF1058_RS16145at 745.753 kb on + strand, within HMPREF1058_RS16145at 745.885 kb on + strandat 746.057 kb on + strandat 746.057 kb on + strandat 746.058 kb on - strandat 746.062 kb on + strandat 746.063 kb on - strandat 746.064 kb on + strandat 746.079 kb on - strand, within HMPREF1058_RS16140at 746.086 kb on - strand, within HMPREF1058_RS16140at 746.109 kb on + strand, within HMPREF1058_RS16140at 746.112 kb on + strand, within HMPREF1058_RS16140at 746.112 kb on + strand, within HMPREF1058_RS16140at 746.142 kb on - strand, within HMPREF1058_RS16140at 746.188 kb on + strand, within HMPREF1058_RS16140at 746.227 kb on + strand, within HMPREF1058_RS16140at 746.232 kb on + strand, within HMPREF1058_RS16140at 746.267 kb on - strand, within HMPREF1058_RS16140at 746.272 kb on - strand, within HMPREF1058_RS16140at 746.275 kb on - strand, within HMPREF1058_RS16140at 746.395 kb on + strand, within HMPREF1058_RS16140at 746.396 kb on - strand, within HMPREF1058_RS16140at 746.396 kb on - strand, within HMPREF1058_RS16140at 746.441 kb on - strand, within HMPREF1058_RS16140at 746.493 kb on - strand, within HMPREF1058_RS16140at 746.555 kb on + strand, within HMPREF1058_RS16140at 746.572 kb on + strand, within HMPREF1058_RS16140at 746.573 kb on - strand, within HMPREF1058_RS16140at 746.573 kb on - strand, within HMPREF1058_RS16140at 746.625 kb on - strand, within HMPREF1058_RS16140at 746.652 kb on - strand, within HMPREF1058_RS16140at 746.669 kb on + strand, within HMPREF1058_RS16140at 746.713 kb on - strand, within HMPREF1058_RS16140at 746.713 kb on - strand, within HMPREF1058_RS16140at 746.796 kb on - strand, within HMPREF1058_RS16140at 746.867 kb on - strandat 746.869 kb on - strandat 746.869 kb on - strandat 746.939 kb on - strandat 746.942 kb on + strandat 746.942 kb on + strandat 746.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse8; day2
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744,237 + HMPREF1058_RS16150 0.31 +0.8
744,251 + HMPREF1058_RS16150 0.32 +1.0
744,251 + HMPREF1058_RS16150 0.32 -2.6
744,252 - HMPREF1058_RS16150 0.32 -2.0
744,253 + HMPREF1058_RS16150 0.33 +0.2
744,299 - HMPREF1058_RS16150 0.37 -1.7
744,337 + HMPREF1058_RS16150 0.41 -2.1
744,369 + HMPREF1058_RS16150 0.44 -0.0
744,401 + HMPREF1058_RS16150 0.47 -1.3
744,402 - HMPREF1058_RS16150 0.47 -3.7
744,408 + HMPREF1058_RS16150 0.47 +0.9
744,409 - HMPREF1058_RS16150 0.48 -3.5
744,425 - HMPREF1058_RS16150 0.49 -2.9
744,434 + HMPREF1058_RS16150 0.50 -0.0
744,451 + HMPREF1058_RS16150 0.52 -0.2
744,451 + HMPREF1058_RS16150 0.52 -0.6
744,486 + HMPREF1058_RS16150 0.55 +1.0
744,486 + HMPREF1058_RS16150 0.55 -1.0
744,486 + HMPREF1058_RS16150 0.55 -1.2
744,491 + HMPREF1058_RS16150 0.55 -1.3
744,491 + HMPREF1058_RS16150 0.55 -0.5
744,499 - HMPREF1058_RS16150 0.56 -1.6
744,562 - HMPREF1058_RS16150 0.62 -3.5
744,584 - HMPREF1058_RS16150 0.64 +1.0
744,604 - HMPREF1058_RS16150 0.66 -0.9
744,604 - HMPREF1058_RS16150 0.66 -2.8
744,604 - HMPREF1058_RS16150 0.66 -2.3
744,604 - HMPREF1058_RS16150 0.66 -2.6
744,649 + HMPREF1058_RS16150 0.70 +3.3
744,649 + HMPREF1058_RS16150 0.70 +3.4
744,650 - HMPREF1058_RS16150 0.71 -1.0
744,791 - HMPREF1058_RS16150 0.84 -3.2
744,841 - HMPREF1058_RS16150 0.89 -1.5
744,859 - -3.6
744,882 + -0.5
744,882 + -0.0
744,882 + +0.8
744,883 - -0.8
744,890 + -0.5
744,891 - -1.8
744,913 + -0.0
744,980 - -2.3
744,986 + +0.8
745,050 + -0.7
745,051 - -1.9
745,057 - -2.6
745,068 + +1.0
745,125 + +0.4
745,125 + +0.8
745,175 + +0.2
745,238 + +2.0
745,288 + HMPREF1058_RS16145 0.13 -2.5
745,328 - HMPREF1058_RS16145 0.19 -1.6
745,328 - HMPREF1058_RS16145 0.19 -2.0
745,350 + HMPREF1058_RS16145 0.21 -0.0
745,449 - HMPREF1058_RS16145 0.34 -1.2
745,476 + HMPREF1058_RS16145 0.38 +0.9
745,477 - HMPREF1058_RS16145 0.38 -1.6
745,579 - HMPREF1058_RS16145 0.51 -0.0
745,640 - HMPREF1058_RS16145 0.59 -1.6
745,640 - HMPREF1058_RS16145 0.59 -1.0
745,679 + HMPREF1058_RS16145 0.64 +0.5
745,742 - HMPREF1058_RS16145 0.73 -1.3
745,752 - HMPREF1058_RS16145 0.74 -1.6
745,753 + HMPREF1058_RS16145 0.74 -0.0
745,885 + +0.6
746,057 + -0.7
746,057 + +0.3
746,058 - -3.0
746,062 + -1.3
746,063 - -3.0
746,064 + -1.6
746,079 - HMPREF1058_RS16140 0.10 -1.6
746,086 - HMPREF1058_RS16140 0.11 -1.6
746,109 + HMPREF1058_RS16140 0.13 +0.3
746,112 + HMPREF1058_RS16140 0.14 +0.1
746,112 + HMPREF1058_RS16140 0.14 -2.6
746,142 - HMPREF1058_RS16140 0.17 -0.0
746,188 + HMPREF1058_RS16140 0.22 -0.2
746,227 + HMPREF1058_RS16140 0.25 +0.5
746,232 + HMPREF1058_RS16140 0.26 -0.4
746,267 - HMPREF1058_RS16140 0.30 -0.6
746,272 - HMPREF1058_RS16140 0.30 -0.0
746,275 - HMPREF1058_RS16140 0.30 -0.0
746,395 + HMPREF1058_RS16140 0.43 -0.4
746,396 - HMPREF1058_RS16140 0.43 -1.6
746,396 - HMPREF1058_RS16140 0.43 -2.0
746,441 - HMPREF1058_RS16140 0.47 -2.8
746,493 - HMPREF1058_RS16140 0.53 -3.0
746,555 + HMPREF1058_RS16140 0.59 -1.2
746,572 + HMPREF1058_RS16140 0.61 +0.1
746,573 - HMPREF1058_RS16140 0.61 -1.8
746,573 - HMPREF1058_RS16140 0.61 -0.0
746,625 - HMPREF1058_RS16140 0.66 -1.6
746,652 - HMPREF1058_RS16140 0.69 -1.8
746,669 + HMPREF1058_RS16140 0.71 -0.1
746,713 - HMPREF1058_RS16140 0.75 -1.6
746,713 - HMPREF1058_RS16140 0.75 -2.0
746,796 - HMPREF1058_RS16140 0.83 -1.2
746,867 - -3.0
746,869 - -0.6
746,869 - -1.3
746,939 - +0.2
746,942 + +1.4
746,942 + +1.6
746,943 - -1.0

Or see this region's nucleotide sequence