Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10205 and HMPREF1058_RS10200 overlap by 4 nucleotides HMPREF1058_RS10200 and HMPREF1058_RS10195 are separated by 4 nucleotides HMPREF1058_RS10195 and HMPREF1058_RS10190 overlap by 4 nucleotides HMPREF1058_RS10190 and HMPREF1058_RS21620 are separated by 129 nucleotides HMPREF1058_RS21620 and HMPREF1058_RS10185 are separated by 1 nucleotides HMPREF1058_RS10185 and HMPREF1058_RS10180 are separated by 1 nucleotides
HMPREF1058_RS10205: HMPREF1058_RS10205 - hypothetical protein, at 708,418 to 708,858
_RS10205
HMPREF1058_RS10200: HMPREF1058_RS10200 - hypothetical protein, at 708,855 to 709,247
_RS10200
HMPREF1058_RS10195: HMPREF1058_RS10195 - 3'-5' exonuclease, at 709,252 to 709,824
_RS10195
HMPREF1058_RS10190: HMPREF1058_RS10190 - ParB/RepB/Spo0J family partition protein, at 709,821 to 710,633
_RS10190
HMPREF1058_RS21620: HMPREF1058_RS21620 - hypothetical protein, at 710,763 to 710,936
_RS21620
HMPREF1058_RS10185: HMPREF1058_RS10185 - hypothetical protein, at 710,938 to 711,393
_RS10185
HMPREF1058_RS10180: HMPREF1058_RS10180 - N-6-adenine-methyltransferase, at 711,395 to 711,883
_RS10180
Position (kb) 709
710
711 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 708.826 kb on - strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.829 kb on + strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.830 kb on - strand at 708.847 kb on + strand at 708.851 kb on + strand at 708.851 kb on + strand at 708.851 kb on + strand at 708.852 kb on - strand at 708.925 kb on - strand, within HMPREF1058_RS10200 at 708.994 kb on + strand, within HMPREF1058_RS10200 at 708.999 kb on - strand, within HMPREF1058_RS10200 at 709.032 kb on - strand, within HMPREF1058_RS10200 at 709.112 kb on + strand, within HMPREF1058_RS10200 at 709.113 kb on - strand, within HMPREF1058_RS10200 at 709.196 kb on + strand, within HMPREF1058_RS10200 at 709.254 kb on - strand at 709.276 kb on - strand at 709.284 kb on + strand at 709.307 kb on + strand at 709.409 kb on + strand, within HMPREF1058_RS10195 at 709.435 kb on + strand, within HMPREF1058_RS10195 at 709.483 kb on + strand, within HMPREF1058_RS10195 at 709.524 kb on + strand, within HMPREF1058_RS10195 at 709.528 kb on - strand, within HMPREF1058_RS10195 at 709.562 kb on + strand, within HMPREF1058_RS10195 at 709.611 kb on - strand, within HMPREF1058_RS10195 at 709.631 kb on - strand, within HMPREF1058_RS10195 at 709.631 kb on - strand, within HMPREF1058_RS10195 at 709.663 kb on + strand, within HMPREF1058_RS10195 at 709.695 kb on + strand, within HMPREF1058_RS10195 at 709.783 kb on + strand at 709.905 kb on + strand, within HMPREF1058_RS10190 at 709.905 kb on + strand, within HMPREF1058_RS10190 at 710.135 kb on + strand, within HMPREF1058_RS10190 at 710.138 kb on + strand, within HMPREF1058_RS10190 at 710.139 kb on - strand, within HMPREF1058_RS10190 at 710.155 kb on - strand, within HMPREF1058_RS10190 at 710.281 kb on + strand, within HMPREF1058_RS10190 at 710.369 kb on + strand, within HMPREF1058_RS10190 at 710.409 kb on - strand, within HMPREF1058_RS10190 at 710.508 kb on - strand, within HMPREF1058_RS10190 at 710.583 kb on - strand at 710.624 kb on + strand at 710.703 kb on + strand at 710.723 kb on - strand at 710.764 kb on + strand at 710.782 kb on + strand, within HMPREF1058_RS21620 at 710.862 kb on + strand, within HMPREF1058_RS21620 at 710.937 kb on - strand at 711.013 kb on + strand, within HMPREF1058_RS10185 at 711.014 kb on - strand, within HMPREF1058_RS10185 at 711.085 kb on + strand, within HMPREF1058_RS10185 at 711.096 kb on - strand, within HMPREF1058_RS10185 at 711.111 kb on + strand, within HMPREF1058_RS10185 at 711.112 kb on - strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.114 kb on - strand, within HMPREF1058_RS10185 at 711.254 kb on - strand, within HMPREF1058_RS10185 at 711.279 kb on + strand, within HMPREF1058_RS10185 at 711.472 kb on + strand, within HMPREF1058_RS10180 at 711.535 kb on + strand, within HMPREF1058_RS10180 at 711.607 kb on + strand, within HMPREF1058_RS10180 at 711.620 kb on + strand, within HMPREF1058_RS10180
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 remove 708,826 - -0.2 708,829 + +0.9 708,829 + +1.3 708,829 + -3.4 708,829 + +0.5 708,829 + -0.6 708,829 + -0.9 708,830 - -1.8 708,830 - +0.2 708,830 - +0.1 708,830 - -0.5 708,847 + -0.8 708,851 + -1.1 708,851 + +0.2 708,851 + -0.8 708,852 - -2.6 708,925 - HMPREF1058_RS10200 0.18 -2.1 708,994 + HMPREF1058_RS10200 0.35 -1.8 708,999 - HMPREF1058_RS10200 0.37 +0.2 709,032 - HMPREF1058_RS10200 0.45 -0.8 709,112 + HMPREF1058_RS10200 0.65 -0.3 709,113 - HMPREF1058_RS10200 0.66 -2.1 709,196 + HMPREF1058_RS10200 0.87 +0.8 709,254 - +0.5 709,276 - +1.2 709,284 + -2.1 709,307 + +0.5 709,409 + HMPREF1058_RS10195 0.27 -0.9 709,435 + HMPREF1058_RS10195 0.32 +0.3 709,483 + HMPREF1058_RS10195 0.40 +1.3 709,524 + HMPREF1058_RS10195 0.47 -4.6 709,528 - HMPREF1058_RS10195 0.48 -1.5 709,562 + HMPREF1058_RS10195 0.54 +0.2 709,611 - HMPREF1058_RS10195 0.63 +1.1 709,631 - HMPREF1058_RS10195 0.66 -3.3 709,631 - HMPREF1058_RS10195 0.66 -0.0 709,663 + HMPREF1058_RS10195 0.72 -0.5 709,695 + HMPREF1058_RS10195 0.77 +0.8 709,783 + -1.8 709,905 + HMPREF1058_RS10190 0.10 -0.8 709,905 + HMPREF1058_RS10190 0.10 +4.7 710,135 + HMPREF1058_RS10190 0.39 +0.6 710,138 + HMPREF1058_RS10190 0.39 -0.5 710,139 - HMPREF1058_RS10190 0.39 -0.8 710,155 - HMPREF1058_RS10190 0.41 -0.8 710,281 + HMPREF1058_RS10190 0.57 +0.7 710,369 + HMPREF1058_RS10190 0.67 -2.4 710,409 - HMPREF1058_RS10190 0.72 +1.3 710,508 - HMPREF1058_RS10190 0.85 -1.4 710,583 - +1.8 710,624 + -4.8 710,703 + +1.2 710,723 - -0.8 710,764 + -1.2 710,782 + HMPREF1058_RS21620 0.11 +0.3 710,862 + HMPREF1058_RS21620 0.57 -0.0 710,937 - -0.8 711,013 + HMPREF1058_RS10185 0.16 +3.0 711,014 - HMPREF1058_RS10185 0.17 +2.8 711,085 + HMPREF1058_RS10185 0.32 +0.1 711,096 - HMPREF1058_RS10185 0.35 +0.2 711,111 + HMPREF1058_RS10185 0.38 +0.6 711,112 - HMPREF1058_RS10185 0.38 +1.2 711,113 + HMPREF1058_RS10185 0.38 +0.7 711,113 + HMPREF1058_RS10185 0.38 +0.1 711,113 + HMPREF1058_RS10185 0.38 -0.7 711,114 - HMPREF1058_RS10185 0.39 -1.4 711,254 - HMPREF1058_RS10185 0.69 +1.4 711,279 + HMPREF1058_RS10185 0.75 +0.3 711,472 + HMPREF1058_RS10180 0.16 +0.8 711,535 + HMPREF1058_RS10180 0.29 +0.2 711,607 + HMPREF1058_RS10180 0.43 +0.7 711,620 + HMPREF1058_RS10180 0.46 -0.8
Or see this region's nucleotide sequence