Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08015 and HMPREF1058_RS08010 are separated by 348 nucleotides HMPREF1058_RS08010 and HMPREF1058_RS08005 are separated by 78 nucleotides
HMPREF1058_RS08015: HMPREF1058_RS08015 - virulence RhuM family protein, at 74,420 to 75,418
_RS08015
HMPREF1058_RS08010: HMPREF1058_RS08010 - family 10 glycosylhydrolase, at 75,767 to 77,446
_RS08010
HMPREF1058_RS08005: HMPREF1058_RS08005 - carbon starvation protein A, at 77,525 to 78,955
_RS08005
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 74.769 kb on - strand, within HMPREF1058_RS08015 at 74.901 kb on + strand, within HMPREF1058_RS08015 at 74.901 kb on + strand, within HMPREF1058_RS08015 at 74.901 kb on + strand, within HMPREF1058_RS08015 at 74.903 kb on + strand, within HMPREF1058_RS08015 at 74.904 kb on - strand, within HMPREF1058_RS08015 at 74.904 kb on - strand, within HMPREF1058_RS08015 at 74.904 kb on - strand, within HMPREF1058_RS08015 at 74.904 kb on - strand, within HMPREF1058_RS08015 at 74.921 kb on + strand, within HMPREF1058_RS08015 at 74.921 kb on + strand, within HMPREF1058_RS08015 at 75.074 kb on + strand, within HMPREF1058_RS08015 at 75.075 kb on - strand, within HMPREF1058_RS08015 at 75.110 kb on + strand, within HMPREF1058_RS08015 at 75.111 kb on - strand, within HMPREF1058_RS08015 at 75.290 kb on - strand, within HMPREF1058_RS08015 at 75.472 kb on - strand at 75.472 kb on - strand at 75.605 kb on - strand at 75.612 kb on + strand at 75.612 kb on + strand at 75.622 kb on + strand at 75.725 kb on + strand at 75.726 kb on - strand at 75.820 kb on - strand at 75.820 kb on - strand at 75.820 kb on - strand at 75.820 kb on - strand at 75.820 kb on - strand at 75.820 kb on - strand at 75.821 kb on + strand at 75.821 kb on + strand at 75.821 kb on + strand at 75.822 kb on - strand at 75.822 kb on - strand at 75.885 kb on - strand at 76.054 kb on - strand, within HMPREF1058_RS08010 at 76.084 kb on + strand at 76.084 kb on + strand, within HMPREF1058_RS08010 at 76.084 kb on + strand, within HMPREF1058_RS08010 at 76.085 kb on - strand, within HMPREF1058_RS08010 at 76.142 kb on - strand, within HMPREF1058_RS08010 at 76.177 kb on - strand, within HMPREF1058_RS08010 at 76.326 kb on + strand, within HMPREF1058_RS08010 at 76.443 kb on - strand, within HMPREF1058_RS08010 at 76.485 kb on + strand, within HMPREF1058_RS08010 at 76.611 kb on - strand, within HMPREF1058_RS08010 at 76.611 kb on - strand, within HMPREF1058_RS08010 at 76.644 kb on + strand, within HMPREF1058_RS08010 at 76.754 kb on - strand, within HMPREF1058_RS08010 at 76.754 kb on - strand, within HMPREF1058_RS08010 at 76.763 kb on - strand, within HMPREF1058_RS08010 at 76.763 kb on - strand, within HMPREF1058_RS08010 at 76.771 kb on + strand, within HMPREF1058_RS08010 at 76.801 kb on + strand, within HMPREF1058_RS08010 at 76.802 kb on - strand, within HMPREF1058_RS08010 at 76.869 kb on + strand, within HMPREF1058_RS08010 at 76.892 kb on - strand, within HMPREF1058_RS08010 at 76.907 kb on + strand, within HMPREF1058_RS08010 at 76.972 kb on + strand, within HMPREF1058_RS08010 at 76.979 kb on - strand, within HMPREF1058_RS08010 at 77.020 kb on + strand, within HMPREF1058_RS08010 at 77.036 kb on + strand, within HMPREF1058_RS08010 at 77.082 kb on - strand, within HMPREF1058_RS08010 at 77.232 kb on - strand, within HMPREF1058_RS08010 at 77.267 kb on + strand, within HMPREF1058_RS08010 at 77.268 kb on - strand, within HMPREF1058_RS08010 at 77.312 kb on + strand at 77.377 kb on - strand at 77.417 kb on + strand at 77.424 kb on - strand at 77.525 kb on - strand at 77.672 kb on - strand, within HMPREF1058_RS08005 at 77.704 kb on + strand, within HMPREF1058_RS08005 at 77.704 kb on + strand, within HMPREF1058_RS08005 at 77.734 kb on + strand, within HMPREF1058_RS08005 at 77.736 kb on + strand, within HMPREF1058_RS08005 at 77.781 kb on + strand, within HMPREF1058_RS08005 at 77.781 kb on + strand, within HMPREF1058_RS08005 at 77.781 kb on + strand, within HMPREF1058_RS08005 at 77.782 kb on - strand, within HMPREF1058_RS08005 at 77.785 kb on + strand, within HMPREF1058_RS08005 at 77.932 kb on - strand, within HMPREF1058_RS08005 at 77.984 kb on - strand, within HMPREF1058_RS08005 at 77.993 kb on + strand, within HMPREF1058_RS08005 at 77.994 kb on - strand, within HMPREF1058_RS08005 at 77.995 kb on + strand, within HMPREF1058_RS08005 at 78.032 kb on + strand, within HMPREF1058_RS08005 at 78.046 kb on + strand, within HMPREF1058_RS08005 at 78.084 kb on - strand, within HMPREF1058_RS08005 at 78.292 kb on + strand, within HMPREF1058_RS08005 at 78.292 kb on + strand, within HMPREF1058_RS08005 at 78.293 kb on - strand, within HMPREF1058_RS08005 at 78.308 kb on + strand, within HMPREF1058_RS08005 at 78.308 kb on + strand, within HMPREF1058_RS08005 at 78.309 kb on - strand, within HMPREF1058_RS08005 at 78.379 kb on + strand, within HMPREF1058_RS08005
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 remove 74,769 - HMPREF1058_RS08015 0.35 -2.1 74,901 + HMPREF1058_RS08015 0.48 -0.5 74,901 + HMPREF1058_RS08015 0.48 -0.5 74,901 + HMPREF1058_RS08015 0.48 -0.5 74,903 + HMPREF1058_RS08015 0.48 +2.5 74,904 - HMPREF1058_RS08015 0.48 -3.0 74,904 - HMPREF1058_RS08015 0.48 +0.2 74,904 - HMPREF1058_RS08015 0.48 +2.2 74,904 - HMPREF1058_RS08015 0.48 -0.5 74,921 + HMPREF1058_RS08015 0.50 -1.9 74,921 + HMPREF1058_RS08015 0.50 -1.5 75,074 + HMPREF1058_RS08015 0.65 -3.9 75,075 - HMPREF1058_RS08015 0.66 -1.5 75,110 + HMPREF1058_RS08015 0.69 -1.5 75,111 - HMPREF1058_RS08015 0.69 +0.9 75,290 - HMPREF1058_RS08015 0.87 +0.0 75,472 - +1.3 75,472 - -1.5 75,605 - -0.3 75,612 + -1.1 75,612 + -2.7 75,622 + +1.6 75,725 + +0.5 75,726 - +0.1 75,820 - +0.7 75,820 - +0.5 75,820 - +1.3 75,820 - +0.4 75,820 - -1.5 75,820 - -1.4 75,821 + +1.7 75,821 + -0.0 75,821 + -2.1 75,822 - +0.1 75,822 - +1.5 75,885 - -2.7 76,054 - HMPREF1058_RS08010 0.17 +0.5 76,084 + +0.5 76,084 + HMPREF1058_RS08010 0.19 +4.0 76,084 + HMPREF1058_RS08010 0.19 +1.3 76,085 - HMPREF1058_RS08010 0.19 -1.1 76,142 - HMPREF1058_RS08010 0.22 -2.5 76,177 - HMPREF1058_RS08010 0.24 +0.5 76,326 + HMPREF1058_RS08010 0.33 -0.4 76,443 - HMPREF1058_RS08010 0.40 -0.4 76,485 + HMPREF1058_RS08010 0.43 -0.6 76,611 - HMPREF1058_RS08010 0.50 -0.4 76,611 - HMPREF1058_RS08010 0.50 -1.8 76,644 + HMPREF1058_RS08010 0.52 -0.1 76,754 - HMPREF1058_RS08010 0.59 -0.5 76,754 - HMPREF1058_RS08010 0.59 +0.0 76,763 - HMPREF1058_RS08010 0.59 -1.1 76,763 - HMPREF1058_RS08010 0.59 +1.6 76,771 + HMPREF1058_RS08010 0.60 +0.7 76,801 + HMPREF1058_RS08010 0.62 -0.1 76,802 - HMPREF1058_RS08010 0.62 -1.1 76,869 + HMPREF1058_RS08010 0.66 -0.5 76,892 - HMPREF1058_RS08010 0.67 -0.1 76,907 + HMPREF1058_RS08010 0.68 -1.1 76,972 + HMPREF1058_RS08010 0.72 -4.3 76,979 - HMPREF1058_RS08010 0.72 +1.2 77,020 + HMPREF1058_RS08010 0.75 +0.1 77,036 + HMPREF1058_RS08010 0.76 -2.1 77,082 - HMPREF1058_RS08010 0.78 +1.8 77,232 - HMPREF1058_RS08010 0.87 -0.3 77,267 + HMPREF1058_RS08010 0.89 +1.1 77,268 - HMPREF1058_RS08010 0.89 +1.5 77,312 + +1.0 77,377 - -1.1 77,417 + +1.8 77,424 - +1.3 77,525 - +0.5 77,672 - HMPREF1058_RS08005 0.10 +3.0 77,704 + HMPREF1058_RS08005 0.13 -0.2 77,704 + HMPREF1058_RS08005 0.13 -2.7 77,734 + HMPREF1058_RS08005 0.15 +1.3 77,736 + HMPREF1058_RS08005 0.15 +0.5 77,781 + HMPREF1058_RS08005 0.18 +0.1 77,781 + HMPREF1058_RS08005 0.18 +3.1 77,781 + HMPREF1058_RS08005 0.18 -2.1 77,782 - HMPREF1058_RS08005 0.18 +0.5 77,785 + HMPREF1058_RS08005 0.18 -1.5 77,932 - HMPREF1058_RS08005 0.28 -0.5 77,984 - HMPREF1058_RS08005 0.32 -3.1 77,993 + HMPREF1058_RS08005 0.33 -1.1 77,994 - HMPREF1058_RS08005 0.33 -0.9 77,995 + HMPREF1058_RS08005 0.33 +2.5 78,032 + HMPREF1058_RS08005 0.35 +0.9 78,046 + HMPREF1058_RS08005 0.36 +1.9 78,084 - HMPREF1058_RS08005 0.39 +0.5 78,292 + HMPREF1058_RS08005 0.54 +1.8 78,292 + HMPREF1058_RS08005 0.54 +0.0 78,293 - HMPREF1058_RS08005 0.54 -1.7 78,308 + HMPREF1058_RS08005 0.55 +0.5 78,308 + HMPREF1058_RS08005 0.55 -0.3 78,309 - HMPREF1058_RS08005 0.55 -0.3 78,379 + HMPREF1058_RS08005 0.60 -1.5
Or see this region's nucleotide sequence