Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03625 and HMPREF1058_RS03620 are separated by 25 nucleotides HMPREF1058_RS03620 and HMPREF1058_RS03615 are separated by 57 nucleotides
HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199
_RS03625
HMPREF1058_RS03620: HMPREF1058_RS03620 - glycosyltransferase, at 236,225 to 237,211
_RS03620
HMPREF1058_RS03615: HMPREF1058_RS03615 - glycosyltransferase, at 237,269 to 238,279
_RS03615
Position (kb)
236
237
238 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 235.231 kb on - strand, within HMPREF1058_RS03625 at 235.375 kb on - strand, within HMPREF1058_RS03625 at 235.380 kb on - strand, within HMPREF1058_RS03625 at 235.393 kb on - strand, within HMPREF1058_RS03625 at 235.405 kb on + strand, within HMPREF1058_RS03625 at 235.542 kb on - strand, within HMPREF1058_RS03625 at 235.558 kb on - strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.596 kb on + strand, within HMPREF1058_RS03625 at 235.671 kb on + strand, within HMPREF1058_RS03625 at 235.711 kb on + strand, within HMPREF1058_RS03625 at 235.748 kb on - strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.758 kb on + strand, within HMPREF1058_RS03625 at 235.784 kb on + strand, within HMPREF1058_RS03625 at 235.788 kb on + strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.868 kb on - strand, within HMPREF1058_RS03625 at 235.899 kb on - strand, within HMPREF1058_RS03625 at 235.909 kb on - strand, within HMPREF1058_RS03625 at 235.934 kb on + strand, within HMPREF1058_RS03625 at 236.034 kb on + strand, within HMPREF1058_RS03625 at 236.086 kb on - strand, within HMPREF1058_RS03625 at 236.104 kb on - strand at 236.110 kb on + strand at 236.191 kb on + strand at 236.218 kb on + strand at 236.218 kb on + strand at 236.218 kb on + strand at 236.239 kb on - strand at 236.239 kb on - strand at 236.248 kb on + strand at 236.259 kb on - strand at 236.276 kb on - strand at 236.283 kb on - strand at 236.350 kb on - strand, within HMPREF1058_RS03620 at 236.379 kb on + strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.380 kb on - strand, within HMPREF1058_RS03620 at 236.384 kb on - strand, within HMPREF1058_RS03620 at 236.392 kb on - strand, within HMPREF1058_RS03620 at 236.395 kb on + strand, within HMPREF1058_RS03620 at 236.396 kb on - strand, within HMPREF1058_RS03620 at 236.426 kb on - strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.427 kb on + strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.428 kb on - strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.431 kb on + strand, within HMPREF1058_RS03620 at 236.432 kb on - strand, within HMPREF1058_RS03620 at 236.443 kb on + strand, within HMPREF1058_RS03620 at 236.488 kb on + strand, within HMPREF1058_RS03620 at 236.533 kb on + strand, within HMPREF1058_RS03620 at 236.596 kb on - strand, within HMPREF1058_RS03620 at 236.597 kb on + strand, within HMPREF1058_RS03620 at 236.692 kb on + strand, within HMPREF1058_RS03620 at 236.759 kb on + strand, within HMPREF1058_RS03620 at 236.760 kb on - strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.801 kb on + strand, within HMPREF1058_RS03620 at 236.802 kb on - strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.803 kb on + strand, within HMPREF1058_RS03620 at 236.804 kb on - strand, within HMPREF1058_RS03620 at 236.842 kb on + strand, within HMPREF1058_RS03620 at 236.846 kb on - strand, within HMPREF1058_RS03620 at 236.867 kb on + strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.970 kb on - strand, within HMPREF1058_RS03620 at 236.972 kb on - strand, within HMPREF1058_RS03620 at 236.999 kb on + strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.000 kb on - strand, within HMPREF1058_RS03620 at 237.116 kb on - strand at 237.132 kb on - strand at 237.155 kb on - strand at 237.182 kb on + strand at 237.230 kb on - strand at 237.240 kb on - strand at 237.248 kb on + strand at 237.338 kb on - strand at 237.392 kb on - strand, within HMPREF1058_RS03615 at 237.398 kb on + strand, within HMPREF1058_RS03615 at 237.440 kb on + strand, within HMPREF1058_RS03615 at 237.459 kb on + strand, within HMPREF1058_RS03615 at 237.480 kb on - strand, within HMPREF1058_RS03615 at 237.487 kb on + strand, within HMPREF1058_RS03615 at 237.487 kb on + strand, within HMPREF1058_RS03615 at 237.488 kb on - strand, within HMPREF1058_RS03615 at 237.495 kb on - strand, within HMPREF1058_RS03615 at 237.533 kb on - strand, within HMPREF1058_RS03615 at 237.537 kb on - strand, within HMPREF1058_RS03615 at 237.549 kb on - strand, within HMPREF1058_RS03615 at 237.572 kb on - strand, within HMPREF1058_RS03615 at 237.626 kb on + strand, within HMPREF1058_RS03615 at 237.626 kb on + strand, within HMPREF1058_RS03615 at 237.641 kb on - strand, within HMPREF1058_RS03615 at 237.683 kb on + strand, within HMPREF1058_RS03615 at 237.685 kb on + strand, within HMPREF1058_RS03615 at 237.751 kb on + strand, within HMPREF1058_RS03615 at 237.765 kb on - strand, within HMPREF1058_RS03615 at 237.765 kb on - strand, within HMPREF1058_RS03615 at 237.826 kb on + strand, within HMPREF1058_RS03615 at 237.863 kb on + strand, within HMPREF1058_RS03615 at 237.864 kb on - strand, within HMPREF1058_RS03615 at 237.886 kb on - strand, within HMPREF1058_RS03615 at 237.886 kb on - strand, within HMPREF1058_RS03615 at 237.923 kb on + strand, within HMPREF1058_RS03615 at 237.979 kb on + strand, within HMPREF1058_RS03615 at 237.980 kb on - strand, within HMPREF1058_RS03615 at 238.008 kb on + strand, within HMPREF1058_RS03615 at 238.034 kb on + strand, within HMPREF1058_RS03615 at 238.035 kb on - strand, within HMPREF1058_RS03615 at 238.035 kb on - strand, within HMPREF1058_RS03615 at 238.039 kb on + strand, within HMPREF1058_RS03615 at 238.040 kb on - strand, within HMPREF1058_RS03615 at 238.047 kb on - strand, within HMPREF1058_RS03615 at 238.047 kb on - strand, within HMPREF1058_RS03615 at 238.055 kb on - strand, within HMPREF1058_RS03615
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 remove 235,231 - HMPREF1058_RS03625 0.10 +0.7 235,375 - HMPREF1058_RS03625 0.23 -3.7 235,380 - HMPREF1058_RS03625 0.24 +0.5 235,393 - HMPREF1058_RS03625 0.25 -2.5 235,405 + HMPREF1058_RS03625 0.26 +0.2 235,542 - HMPREF1058_RS03625 0.39 -2.8 235,558 - HMPREF1058_RS03625 0.40 -3.4 235,596 + HMPREF1058_RS03625 0.44 -1.3 235,596 + HMPREF1058_RS03625 0.44 -1.3 235,671 + HMPREF1058_RS03625 0.51 +0.3 235,711 + HMPREF1058_RS03625 0.55 -0.3 235,748 - HMPREF1058_RS03625 0.58 -2.6 235,758 + HMPREF1058_RS03625 0.59 -1.3 235,758 + HMPREF1058_RS03625 0.59 +0.8 235,784 + HMPREF1058_RS03625 0.61 -0.3 235,788 + HMPREF1058_RS03625 0.62 -2.9 235,868 - HMPREF1058_RS03625 0.69 -1.3 235,868 - HMPREF1058_RS03625 0.69 -1.3 235,899 - HMPREF1058_RS03625 0.72 +0.5 235,909 - HMPREF1058_RS03625 0.73 -0.2 235,934 + HMPREF1058_RS03625 0.75 -1.6 236,034 + HMPREF1058_RS03625 0.85 -1.2 236,086 - HMPREF1058_RS03625 0.89 +3.5 236,104 - +1.7 236,110 + -1.9 236,191 + -0.0 236,218 + +0.3 236,218 + +0.4 236,218 + +0.4 236,239 - +3.6 236,239 - -0.7 236,248 + +0.7 236,259 - -0.9 236,276 - -3.7 236,283 - +0.5 236,350 - HMPREF1058_RS03620 0.13 +0.7 236,379 + HMPREF1058_RS03620 0.16 -1.3 236,380 - HMPREF1058_RS03620 0.16 -0.9 236,380 - HMPREF1058_RS03620 0.16 -0.3 236,384 - HMPREF1058_RS03620 0.16 -1.9 236,392 - HMPREF1058_RS03620 0.17 -0.3 236,395 + HMPREF1058_RS03620 0.17 -0.9 236,396 - HMPREF1058_RS03620 0.17 -0.3 236,426 - HMPREF1058_RS03620 0.20 -3.4 236,427 + HMPREF1058_RS03620 0.20 -1.4 236,427 + HMPREF1058_RS03620 0.20 +0.7 236,428 - HMPREF1058_RS03620 0.21 -1.3 236,428 - HMPREF1058_RS03620 0.21 -2.5 236,431 + HMPREF1058_RS03620 0.21 -1.6 236,431 + HMPREF1058_RS03620 0.21 -0.0 236,431 + HMPREF1058_RS03620 0.21 -0.9 236,432 - HMPREF1058_RS03620 0.21 -0.3 236,443 + HMPREF1058_RS03620 0.22 -2.1 236,488 + HMPREF1058_RS03620 0.27 -1.3 236,533 + HMPREF1058_RS03620 0.31 -2.6 236,596 - HMPREF1058_RS03620 0.38 -3.5 236,597 + HMPREF1058_RS03620 0.38 -1.3 236,692 + HMPREF1058_RS03620 0.47 +1.9 236,759 + HMPREF1058_RS03620 0.54 -0.1 236,760 - HMPREF1058_RS03620 0.54 -2.5 236,801 + HMPREF1058_RS03620 0.58 +0.2 236,801 + HMPREF1058_RS03620 0.58 +0.1 236,802 - HMPREF1058_RS03620 0.58 -1.6 236,803 + HMPREF1058_RS03620 0.59 -0.3 236,803 + HMPREF1058_RS03620 0.59 +0.1 236,803 + HMPREF1058_RS03620 0.59 -3.0 236,803 + HMPREF1058_RS03620 0.59 +0.7 236,804 - HMPREF1058_RS03620 0.59 +1.6 236,842 + HMPREF1058_RS03620 0.63 +1.4 236,846 - HMPREF1058_RS03620 0.63 -2.9 236,867 + HMPREF1058_RS03620 0.65 +0.7 236,970 - HMPREF1058_RS03620 0.75 -3.0 236,970 - HMPREF1058_RS03620 0.75 -0.0 236,972 - HMPREF1058_RS03620 0.76 -2.3 236,999 + HMPREF1058_RS03620 0.78 -3.3 237,000 - HMPREF1058_RS03620 0.79 -0.9 237,000 - HMPREF1058_RS03620 0.79 -1.3 237,116 - +0.2 237,132 - +0.9 237,155 - -1.3 237,182 + -0.1 237,230 - +0.2 237,240 - -1.9 237,248 + +0.7 237,338 - -3.0 237,392 - HMPREF1058_RS03615 0.12 -3.4 237,398 + HMPREF1058_RS03615 0.13 -0.9 237,440 + HMPREF1058_RS03615 0.17 -1.6 237,459 + HMPREF1058_RS03615 0.19 +0.7 237,480 - HMPREF1058_RS03615 0.21 -3.1 237,487 + HMPREF1058_RS03615 0.22 +2.4 237,487 + HMPREF1058_RS03615 0.22 -2.5 237,488 - HMPREF1058_RS03615 0.22 -1.9 237,495 - HMPREF1058_RS03615 0.22 -0.3 237,533 - HMPREF1058_RS03615 0.26 -0.3 237,537 - HMPREF1058_RS03615 0.27 -0.9 237,549 - HMPREF1058_RS03615 0.28 -1.4 237,572 - HMPREF1058_RS03615 0.30 -3.5 237,626 + HMPREF1058_RS03615 0.35 -2.1 237,626 + HMPREF1058_RS03615 0.35 -2.3 237,641 - HMPREF1058_RS03615 0.37 -0.3 237,683 + HMPREF1058_RS03615 0.41 -0.9 237,685 + HMPREF1058_RS03615 0.41 +1.6 237,751 + HMPREF1058_RS03615 0.48 -0.3 237,765 - HMPREF1058_RS03615 0.49 -3.2 237,765 - HMPREF1058_RS03615 0.49 -1.9 237,826 + HMPREF1058_RS03615 0.55 -0.3 237,863 + HMPREF1058_RS03615 0.59 +1.1 237,864 - HMPREF1058_RS03615 0.59 -2.3 237,886 - HMPREF1058_RS03615 0.61 +0.0 237,886 - HMPREF1058_RS03615 0.61 -1.6 237,923 + HMPREF1058_RS03615 0.65 +3.1 237,979 + HMPREF1058_RS03615 0.70 -1.3 237,980 - HMPREF1058_RS03615 0.70 -1.9 238,008 + HMPREF1058_RS03615 0.73 -2.5 238,034 + HMPREF1058_RS03615 0.76 -1.3 238,035 - HMPREF1058_RS03615 0.76 -1.3 238,035 - HMPREF1058_RS03615 0.76 -1.9 238,039 + HMPREF1058_RS03615 0.76 -2.6 238,040 - HMPREF1058_RS03615 0.76 -3.1 238,047 - HMPREF1058_RS03615 0.77 -1.3 238,047 - HMPREF1058_RS03615 0.77 -3.3 238,055 - HMPREF1058_RS03615 0.78 -2.1
Or see this region's nucleotide sequence