Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03620

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03625 and HMPREF1058_RS03620 are separated by 25 nucleotidesHMPREF1058_RS03620 and HMPREF1058_RS03615 are separated by 57 nucleotides HMPREF1058_RS03625: HMPREF1058_RS03625 - polysaccharide pyruvyl transferase family protein, at 235,123 to 236,199 _RS03625 HMPREF1058_RS03620: HMPREF1058_RS03620 - glycosyltransferase, at 236,225 to 237,211 _RS03620 HMPREF1058_RS03615: HMPREF1058_RS03615 - glycosyltransferase, at 237,269 to 238,279 _RS03615 Position (kb) 236 237 238Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 235.231 kb on - strand, within HMPREF1058_RS03625at 235.375 kb on - strand, within HMPREF1058_RS03625at 235.380 kb on - strand, within HMPREF1058_RS03625at 235.393 kb on - strand, within HMPREF1058_RS03625at 235.405 kb on + strand, within HMPREF1058_RS03625at 235.542 kb on - strand, within HMPREF1058_RS03625at 235.558 kb on - strand, within HMPREF1058_RS03625at 235.596 kb on + strand, within HMPREF1058_RS03625at 235.596 kb on + strand, within HMPREF1058_RS03625at 235.671 kb on + strand, within HMPREF1058_RS03625at 235.711 kb on + strand, within HMPREF1058_RS03625at 235.748 kb on - strand, within HMPREF1058_RS03625at 235.758 kb on + strand, within HMPREF1058_RS03625at 235.758 kb on + strand, within HMPREF1058_RS03625at 235.784 kb on + strand, within HMPREF1058_RS03625at 235.788 kb on + strand, within HMPREF1058_RS03625at 235.868 kb on - strand, within HMPREF1058_RS03625at 235.868 kb on - strand, within HMPREF1058_RS03625at 235.899 kb on - strand, within HMPREF1058_RS03625at 235.909 kb on - strand, within HMPREF1058_RS03625at 235.934 kb on + strand, within HMPREF1058_RS03625at 236.034 kb on + strand, within HMPREF1058_RS03625at 236.086 kb on - strand, within HMPREF1058_RS03625at 236.104 kb on - strandat 236.110 kb on + strandat 236.191 kb on + strandat 236.218 kb on + strandat 236.218 kb on + strandat 236.218 kb on + strandat 236.239 kb on - strandat 236.239 kb on - strandat 236.248 kb on + strandat 236.259 kb on - strandat 236.276 kb on - strandat 236.283 kb on - strandat 236.350 kb on - strand, within HMPREF1058_RS03620at 236.379 kb on + strand, within HMPREF1058_RS03620at 236.380 kb on - strand, within HMPREF1058_RS03620at 236.380 kb on - strand, within HMPREF1058_RS03620at 236.384 kb on - strand, within HMPREF1058_RS03620at 236.392 kb on - strand, within HMPREF1058_RS03620at 236.395 kb on + strand, within HMPREF1058_RS03620at 236.396 kb on - strand, within HMPREF1058_RS03620at 236.426 kb on - strand, within HMPREF1058_RS03620at 236.427 kb on + strand, within HMPREF1058_RS03620at 236.427 kb on + strand, within HMPREF1058_RS03620at 236.428 kb on - strand, within HMPREF1058_RS03620at 236.428 kb on - strand, within HMPREF1058_RS03620at 236.431 kb on + strand, within HMPREF1058_RS03620at 236.431 kb on + strand, within HMPREF1058_RS03620at 236.431 kb on + strand, within HMPREF1058_RS03620at 236.432 kb on - strand, within HMPREF1058_RS03620at 236.443 kb on + strand, within HMPREF1058_RS03620at 236.488 kb on + strand, within HMPREF1058_RS03620at 236.533 kb on + strand, within HMPREF1058_RS03620at 236.596 kb on - strand, within HMPREF1058_RS03620at 236.597 kb on + strand, within HMPREF1058_RS03620at 236.692 kb on + strand, within HMPREF1058_RS03620at 236.759 kb on + strand, within HMPREF1058_RS03620at 236.760 kb on - strand, within HMPREF1058_RS03620at 236.801 kb on + strand, within HMPREF1058_RS03620at 236.801 kb on + strand, within HMPREF1058_RS03620at 236.802 kb on - strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.803 kb on + strand, within HMPREF1058_RS03620at 236.804 kb on - strand, within HMPREF1058_RS03620at 236.842 kb on + strand, within HMPREF1058_RS03620at 236.846 kb on - strand, within HMPREF1058_RS03620at 236.867 kb on + strand, within HMPREF1058_RS03620at 236.970 kb on - strand, within HMPREF1058_RS03620at 236.970 kb on - strand, within HMPREF1058_RS03620at 236.972 kb on - strand, within HMPREF1058_RS03620at 236.999 kb on + strand, within HMPREF1058_RS03620at 237.000 kb on - strand, within HMPREF1058_RS03620at 237.000 kb on - strand, within HMPREF1058_RS03620at 237.116 kb on - strandat 237.132 kb on - strandat 237.155 kb on - strandat 237.182 kb on + strandat 237.230 kb on - strandat 237.240 kb on - strandat 237.248 kb on + strandat 237.338 kb on - strandat 237.392 kb on - strand, within HMPREF1058_RS03615at 237.398 kb on + strand, within HMPREF1058_RS03615at 237.440 kb on + strand, within HMPREF1058_RS03615at 237.459 kb on + strand, within HMPREF1058_RS03615at 237.480 kb on - strand, within HMPREF1058_RS03615at 237.487 kb on + strand, within HMPREF1058_RS03615at 237.487 kb on + strand, within HMPREF1058_RS03615at 237.488 kb on - strand, within HMPREF1058_RS03615at 237.495 kb on - strand, within HMPREF1058_RS03615at 237.533 kb on - strand, within HMPREF1058_RS03615at 237.537 kb on - strand, within HMPREF1058_RS03615at 237.549 kb on - strand, within HMPREF1058_RS03615at 237.572 kb on - strand, within HMPREF1058_RS03615at 237.626 kb on + strand, within HMPREF1058_RS03615at 237.626 kb on + strand, within HMPREF1058_RS03615at 237.641 kb on - strand, within HMPREF1058_RS03615at 237.683 kb on + strand, within HMPREF1058_RS03615at 237.685 kb on + strand, within HMPREF1058_RS03615at 237.751 kb on + strand, within HMPREF1058_RS03615at 237.765 kb on - strand, within HMPREF1058_RS03615at 237.765 kb on - strand, within HMPREF1058_RS03615at 237.826 kb on + strand, within HMPREF1058_RS03615at 237.863 kb on + strand, within HMPREF1058_RS03615at 237.864 kb on - strand, within HMPREF1058_RS03615at 237.886 kb on - strand, within HMPREF1058_RS03615at 237.886 kb on - strand, within HMPREF1058_RS03615at 237.923 kb on + strand, within HMPREF1058_RS03615at 237.979 kb on + strand, within HMPREF1058_RS03615at 237.980 kb on - strand, within HMPREF1058_RS03615at 238.008 kb on + strand, within HMPREF1058_RS03615at 238.034 kb on + strand, within HMPREF1058_RS03615at 238.035 kb on - strand, within HMPREF1058_RS03615at 238.035 kb on - strand, within HMPREF1058_RS03615at 238.039 kb on + strand, within HMPREF1058_RS03615at 238.040 kb on - strand, within HMPREF1058_RS03615at 238.047 kb on - strand, within HMPREF1058_RS03615at 238.047 kb on - strand, within HMPREF1058_RS03615at 238.055 kb on - strand, within HMPREF1058_RS03615

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
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235,231 - HMPREF1058_RS03625 0.10 +0.7
235,375 - HMPREF1058_RS03625 0.23 -3.7
235,380 - HMPREF1058_RS03625 0.24 +0.5
235,393 - HMPREF1058_RS03625 0.25 -2.5
235,405 + HMPREF1058_RS03625 0.26 +0.2
235,542 - HMPREF1058_RS03625 0.39 -2.8
235,558 - HMPREF1058_RS03625 0.40 -3.4
235,596 + HMPREF1058_RS03625 0.44 -1.3
235,596 + HMPREF1058_RS03625 0.44 -1.3
235,671 + HMPREF1058_RS03625 0.51 +0.3
235,711 + HMPREF1058_RS03625 0.55 -0.3
235,748 - HMPREF1058_RS03625 0.58 -2.6
235,758 + HMPREF1058_RS03625 0.59 -1.3
235,758 + HMPREF1058_RS03625 0.59 +0.8
235,784 + HMPREF1058_RS03625 0.61 -0.3
235,788 + HMPREF1058_RS03625 0.62 -2.9
235,868 - HMPREF1058_RS03625 0.69 -1.3
235,868 - HMPREF1058_RS03625 0.69 -1.3
235,899 - HMPREF1058_RS03625 0.72 +0.5
235,909 - HMPREF1058_RS03625 0.73 -0.2
235,934 + HMPREF1058_RS03625 0.75 -1.6
236,034 + HMPREF1058_RS03625 0.85 -1.2
236,086 - HMPREF1058_RS03625 0.89 +3.5
236,104 - +1.7
236,110 + -1.9
236,191 + -0.0
236,218 + +0.3
236,218 + +0.4
236,218 + +0.4
236,239 - +3.6
236,239 - -0.7
236,248 + +0.7
236,259 - -0.9
236,276 - -3.7
236,283 - +0.5
236,350 - HMPREF1058_RS03620 0.13 +0.7
236,379 + HMPREF1058_RS03620 0.16 -1.3
236,380 - HMPREF1058_RS03620 0.16 -0.9
236,380 - HMPREF1058_RS03620 0.16 -0.3
236,384 - HMPREF1058_RS03620 0.16 -1.9
236,392 - HMPREF1058_RS03620 0.17 -0.3
236,395 + HMPREF1058_RS03620 0.17 -0.9
236,396 - HMPREF1058_RS03620 0.17 -0.3
236,426 - HMPREF1058_RS03620 0.20 -3.4
236,427 + HMPREF1058_RS03620 0.20 -1.4
236,427 + HMPREF1058_RS03620 0.20 +0.7
236,428 - HMPREF1058_RS03620 0.21 -1.3
236,428 - HMPREF1058_RS03620 0.21 -2.5
236,431 + HMPREF1058_RS03620 0.21 -1.6
236,431 + HMPREF1058_RS03620 0.21 -0.0
236,431 + HMPREF1058_RS03620 0.21 -0.9
236,432 - HMPREF1058_RS03620 0.21 -0.3
236,443 + HMPREF1058_RS03620 0.22 -2.1
236,488 + HMPREF1058_RS03620 0.27 -1.3
236,533 + HMPREF1058_RS03620 0.31 -2.6
236,596 - HMPREF1058_RS03620 0.38 -3.5
236,597 + HMPREF1058_RS03620 0.38 -1.3
236,692 + HMPREF1058_RS03620 0.47 +1.9
236,759 + HMPREF1058_RS03620 0.54 -0.1
236,760 - HMPREF1058_RS03620 0.54 -2.5
236,801 + HMPREF1058_RS03620 0.58 +0.2
236,801 + HMPREF1058_RS03620 0.58 +0.1
236,802 - HMPREF1058_RS03620 0.58 -1.6
236,803 + HMPREF1058_RS03620 0.59 -0.3
236,803 + HMPREF1058_RS03620 0.59 +0.1
236,803 + HMPREF1058_RS03620 0.59 -3.0
236,803 + HMPREF1058_RS03620 0.59 +0.7
236,804 - HMPREF1058_RS03620 0.59 +1.6
236,842 + HMPREF1058_RS03620 0.63 +1.4
236,846 - HMPREF1058_RS03620 0.63 -2.9
236,867 + HMPREF1058_RS03620 0.65 +0.7
236,970 - HMPREF1058_RS03620 0.75 -3.0
236,970 - HMPREF1058_RS03620 0.75 -0.0
236,972 - HMPREF1058_RS03620 0.76 -2.3
236,999 + HMPREF1058_RS03620 0.78 -3.3
237,000 - HMPREF1058_RS03620 0.79 -0.9
237,000 - HMPREF1058_RS03620 0.79 -1.3
237,116 - +0.2
237,132 - +0.9
237,155 - -1.3
237,182 + -0.1
237,230 - +0.2
237,240 - -1.9
237,248 + +0.7
237,338 - -3.0
237,392 - HMPREF1058_RS03615 0.12 -3.4
237,398 + HMPREF1058_RS03615 0.13 -0.9
237,440 + HMPREF1058_RS03615 0.17 -1.6
237,459 + HMPREF1058_RS03615 0.19 +0.7
237,480 - HMPREF1058_RS03615 0.21 -3.1
237,487 + HMPREF1058_RS03615 0.22 +2.4
237,487 + HMPREF1058_RS03615 0.22 -2.5
237,488 - HMPREF1058_RS03615 0.22 -1.9
237,495 - HMPREF1058_RS03615 0.22 -0.3
237,533 - HMPREF1058_RS03615 0.26 -0.3
237,537 - HMPREF1058_RS03615 0.27 -0.9
237,549 - HMPREF1058_RS03615 0.28 -1.4
237,572 - HMPREF1058_RS03615 0.30 -3.5
237,626 + HMPREF1058_RS03615 0.35 -2.1
237,626 + HMPREF1058_RS03615 0.35 -2.3
237,641 - HMPREF1058_RS03615 0.37 -0.3
237,683 + HMPREF1058_RS03615 0.41 -0.9
237,685 + HMPREF1058_RS03615 0.41 +1.6
237,751 + HMPREF1058_RS03615 0.48 -0.3
237,765 - HMPREF1058_RS03615 0.49 -3.2
237,765 - HMPREF1058_RS03615 0.49 -1.9
237,826 + HMPREF1058_RS03615 0.55 -0.3
237,863 + HMPREF1058_RS03615 0.59 +1.1
237,864 - HMPREF1058_RS03615 0.59 -2.3
237,886 - HMPREF1058_RS03615 0.61 +0.0
237,886 - HMPREF1058_RS03615 0.61 -1.6
237,923 + HMPREF1058_RS03615 0.65 +3.1
237,979 + HMPREF1058_RS03615 0.70 -1.3
237,980 - HMPREF1058_RS03615 0.70 -1.9
238,008 + HMPREF1058_RS03615 0.73 -2.5
238,034 + HMPREF1058_RS03615 0.76 -1.3
238,035 - HMPREF1058_RS03615 0.76 -1.3
238,035 - HMPREF1058_RS03615 0.76 -1.9
238,039 + HMPREF1058_RS03615 0.76 -2.6
238,040 - HMPREF1058_RS03615 0.76 -3.1
238,047 - HMPREF1058_RS03615 0.77 -1.3
238,047 - HMPREF1058_RS03615 0.77 -3.3
238,055 - HMPREF1058_RS03615 0.78 -2.1

Or see this region's nucleotide sequence