Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03460 and HMPREF1058_RS03455 are separated by 21 nucleotides HMPREF1058_RS03455 and HMPREF1058_RS03450 are separated by 39 nucleotides HMPREF1058_RS03450 and HMPREF1058_RS03445 are separated by 128 nucleotides HMPREF1058_RS03445 and HMPREF1058_RS21110 are separated by 179 nucleotides HMPREF1058_RS21110 and HMPREF1058_RS03435 are separated by 286 nucleotides
HMPREF1058_RS03460: HMPREF1058_RS03460 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 276,384 to 277,574
_RS03460
HMPREF1058_RS03455: HMPREF1058_RS03455 - hypothetical protein, at 277,596 to 277,811
_RS03455
HMPREF1058_RS03450: HMPREF1058_RS03450 - hypothetical protein, at 277,851 to 278,297
_RS03450
HMPREF1058_RS03445: HMPREF1058_RS03445 - hypothetical protein, at 278,426 to 280,690
_RS03445
HMPREF1058_RS21110: HMPREF1058_RS21110 - DUF4248 domain-containing protein, at 280,870 to 281,076
_RS21110
HMPREF1058_RS03435: HMPREF1058_RS03435 - DNA-binding protein, at 281,363 to 281,869
_RS03435
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 277.447 kb on - strand, within HMPREF1058_RS03460 at 277.588 kb on - strand at 277.588 kb on - strand at 277.589 kb on + strand at 277.589 kb on + strand at 277.589 kb on + strand at 277.597 kb on + strand at 277.664 kb on - strand, within HMPREF1058_RS03455 at 277.664 kb on - strand, within HMPREF1058_RS03455 at 277.682 kb on + strand, within HMPREF1058_RS03455 at 277.682 kb on + strand, within HMPREF1058_RS03455 at 277.868 kb on + strand at 277.872 kb on + strand at 277.886 kb on + strand at 277.958 kb on + strand, within HMPREF1058_RS03450 at 277.959 kb on - strand, within HMPREF1058_RS03450 at 277.985 kb on + strand, within HMPREF1058_RS03450 at 277.992 kb on - strand, within HMPREF1058_RS03450 at 278.359 kb on - strand at 278.705 kb on + strand, within HMPREF1058_RS03445 at 278.706 kb on - strand, within HMPREF1058_RS03445 at 278.749 kb on - strand, within HMPREF1058_RS03445 at 278.822 kb on + strand, within HMPREF1058_RS03445 at 278.823 kb on - strand, within HMPREF1058_RS03445 at 279.145 kb on - strand, within HMPREF1058_RS03445 at 279.150 kb on - strand, within HMPREF1058_RS03445 at 279.192 kb on - strand, within HMPREF1058_RS03445 at 279.604 kb on + strand, within HMPREF1058_RS03445 at 279.693 kb on - strand, within HMPREF1058_RS03445 at 279.929 kb on - strand, within HMPREF1058_RS03445 at 279.957 kb on - strand, within HMPREF1058_RS03445 at 280.149 kb on + strand, within HMPREF1058_RS03445 at 280.239 kb on + strand, within HMPREF1058_RS03445 at 280.240 kb on - strand, within HMPREF1058_RS03445 at 280.449 kb on - strand, within HMPREF1058_RS03445 at 280.551 kb on + strand at 280.572 kb on - strand at 280.605 kb on + strand at 280.735 kb on + strand at 280.737 kb on + strand at 280.745 kb on + strand at 280.752 kb on + strand at 280.775 kb on - strand at 280.778 kb on - strand at 280.791 kb on - strand at 280.793 kb on - strand at 280.795 kb on - strand at 280.802 kb on - strand at 280.804 kb on - strand at 280.804 kb on - strand at 281.112 kb on + strand at 281.122 kb on + strand at 281.188 kb on + strand at 281.210 kb on + strand at 281.210 kb on + strand at 281.211 kb on - strand at 281.348 kb on - strand at 281.380 kb on + strand at 281.444 kb on + strand, within HMPREF1058_RS03435 at 281.504 kb on + strand, within HMPREF1058_RS03435 at 281.522 kb on + strand, within HMPREF1058_RS03435 at 281.523 kb on - strand, within HMPREF1058_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 remove 277,447 - HMPREF1058_RS03460 0.89 -0.6 277,588 - +0.9 277,588 - +4.9 277,589 + +1.3 277,589 + -1.6 277,589 + +3.0 277,597 + +3.3 277,664 - HMPREF1058_RS03455 0.31 +2.3 277,664 - HMPREF1058_RS03455 0.31 +1.8 277,682 + HMPREF1058_RS03455 0.40 +1.1 277,682 + HMPREF1058_RS03455 0.40 +4.2 277,868 + -0.1 277,872 + -1.9 277,886 + -0.9 277,958 + HMPREF1058_RS03450 0.24 +0.4 277,959 - HMPREF1058_RS03450 0.24 -2.1 277,985 + HMPREF1058_RS03450 0.30 -0.3 277,992 - HMPREF1058_RS03450 0.32 +3.3 278,359 - +1.5 278,705 + HMPREF1058_RS03445 0.12 +2.8 278,706 - HMPREF1058_RS03445 0.12 +1.1 278,749 - HMPREF1058_RS03445 0.14 -0.9 278,822 + HMPREF1058_RS03445 0.17 +2.3 278,823 - HMPREF1058_RS03445 0.18 -1.9 279,145 - HMPREF1058_RS03445 0.32 -0.3 279,150 - HMPREF1058_RS03445 0.32 +1.0 279,192 - HMPREF1058_RS03445 0.34 -0.3 279,604 + HMPREF1058_RS03445 0.52 +0.2 279,693 - HMPREF1058_RS03445 0.56 -0.5 279,929 - HMPREF1058_RS03445 0.66 -0.3 279,957 - HMPREF1058_RS03445 0.68 +2.4 280,149 + HMPREF1058_RS03445 0.76 -0.3 280,239 + HMPREF1058_RS03445 0.80 -0.2 280,240 - HMPREF1058_RS03445 0.80 +1.3 280,449 - HMPREF1058_RS03445 0.89 -0.3 280,551 + +0.7 280,572 - -1.9 280,605 + +1.3 280,735 + +0.2 280,737 + +1.2 280,745 + +1.7 280,752 + -1.9 280,775 - +1.7 280,778 - +1.7 280,791 - +1.8 280,793 - +1.5 280,795 - +3.1 280,802 - +0.7 280,804 - -0.9 280,804 - -0.3 281,112 + +0.2 281,122 + -2.3 281,188 + +0.5 281,210 + +0.6 281,210 + +1.4 281,211 - +0.6 281,348 - +0.7 281,380 + +3.2 281,444 + HMPREF1058_RS03435 0.16 -0.7 281,504 + HMPREF1058_RS03435 0.28 -2.1 281,522 + HMPREF1058_RS03435 0.31 -0.7 281,523 - HMPREF1058_RS03435 0.32 -1.3
Or see this region's nucleotide sequence