Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06875

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS06865 and ABIE51_RS06870 are separated by 53 nucleotidesABIE51_RS06870 and ABIE51_RS06875 overlap by 11 nucleotidesABIE51_RS06875 and ABIE51_RS06880 overlap by 11 nucleotides ABIE51_RS06865: ABIE51_RS06865 - tetratricopeptide repeat protein, at 1,476,318 to 1,477,613 _RS06865 ABIE51_RS06870: ABIE51_RS06870 - hypothetical protein, at 1,477,667 to 1,478,077 _RS06870 ABIE51_RS06875: ABIE51_RS06875 - ribonuclease HII, at 1,478,067 to 1,478,744 _RS06875 ABIE51_RS06880: ABIE51_RS06880 - lipid-A-disaccharide synthase, at 1,478,734 to 1,479,936 _RS06880 Position (kb) 1478 1479Strain fitness (log2 ratio) -1 0 1 2at 1477.162 kb on + strand, within ABIE51_RS06865at 1477.162 kb on + strand, within ABIE51_RS06865at 1477.163 kb on - strand, within ABIE51_RS06865at 1477.164 kb on + strand, within ABIE51_RS06865at 1477.165 kb on - strand, within ABIE51_RS06865at 1477.165 kb on - strand, within ABIE51_RS06865at 1477.269 kb on + strand, within ABIE51_RS06865at 1477.270 kb on - strand, within ABIE51_RS06865at 1477.270 kb on - strand, within ABIE51_RS06865at 1477.270 kb on - strand, within ABIE51_RS06865at 1477.299 kb on + strand, within ABIE51_RS06865at 1477.299 kb on + strand, within ABIE51_RS06865at 1477.299 kb on + strand, within ABIE51_RS06865at 1477.350 kb on + strand, within ABIE51_RS06865at 1477.351 kb on - strand, within ABIE51_RS06865at 1477.351 kb on - strand, within ABIE51_RS06865at 1477.713 kb on + strand, within ABIE51_RS06870at 1477.713 kb on + strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.714 kb on - strand, within ABIE51_RS06870at 1477.787 kb on + strand, within ABIE51_RS06870at 1477.788 kb on - strand, within ABIE51_RS06870at 1477.808 kb on - strand, within ABIE51_RS06870at 1477.982 kb on + strand, within ABIE51_RS06870at 1477.982 kb on + strand, within ABIE51_RS06870at 1477.982 kb on + strand, within ABIE51_RS06870at 1477.983 kb on - strand, within ABIE51_RS06870at 1477.983 kb on - strand, within ABIE51_RS06870at 1477.983 kb on - strand, within ABIE51_RS06870at 1478.015 kb on + strand, within ABIE51_RS06870at 1478.015 kb on + strand, within ABIE51_RS06870at 1478.015 kb on + strand, within ABIE51_RS06870at 1478.016 kb on - strand, within ABIE51_RS06870at 1478.016 kb on - strand, within ABIE51_RS06870at 1478.021 kb on + strand, within ABIE51_RS06870at 1478.021 kb on + strand, within ABIE51_RS06870at 1478.075 kb on + strandat 1478.199 kb on + strand, within ABIE51_RS06875at 1478.200 kb on - strand, within ABIE51_RS06875at 1478.212 kb on + strand, within ABIE51_RS06875at 1478.212 kb on + strand, within ABIE51_RS06875at 1478.212 kb on + strand, within ABIE51_RS06875at 1478.213 kb on - strand, within ABIE51_RS06875at 1478.269 kb on + strand, within ABIE51_RS06875at 1478.270 kb on - strand, within ABIE51_RS06875at 1478.270 kb on - strand, within ABIE51_RS06875at 1478.284 kb on - strand, within ABIE51_RS06875at 1478.458 kb on + strand, within ABIE51_RS06875at 1478.459 kb on - strand, within ABIE51_RS06875at 1478.459 kb on - strand, within ABIE51_RS06875at 1478.536 kb on + strand, within ABIE51_RS06875at 1478.536 kb on + strand, within ABIE51_RS06875at 1478.536 kb on + strand, within ABIE51_RS06875at 1478.537 kb on - strand, within ABIE51_RS06875at 1478.537 kb on - strand, within ABIE51_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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1,477,162 + ABIE51_RS06865 0.65 +0.2
1,477,162 + ABIE51_RS06865 0.65 -0.0
1,477,163 - ABIE51_RS06865 0.65 -0.2
1,477,164 + ABIE51_RS06865 0.65 -0.1
1,477,165 - ABIE51_RS06865 0.65 +1.2
1,477,165 - ABIE51_RS06865 0.65 -0.3
1,477,269 + ABIE51_RS06865 0.73 +1.5
1,477,270 - ABIE51_RS06865 0.73 +0.2
1,477,270 - ABIE51_RS06865 0.73 +0.3
1,477,270 - ABIE51_RS06865 0.73 -0.1
1,477,299 + ABIE51_RS06865 0.76 +0.4
1,477,299 + ABIE51_RS06865 0.76 +0.6
1,477,299 + ABIE51_RS06865 0.76 +0.0
1,477,350 + ABIE51_RS06865 0.80 +0.9
1,477,351 - ABIE51_RS06865 0.80 +0.8
1,477,351 - ABIE51_RS06865 0.80 +1.0
1,477,713 + ABIE51_RS06870 0.11 -0.2
1,477,713 + ABIE51_RS06870 0.11 +1.4
1,477,714 - ABIE51_RS06870 0.11 -0.4
1,477,714 - ABIE51_RS06870 0.11 -0.9
1,477,714 - ABIE51_RS06870 0.11 -0.5
1,477,714 - ABIE51_RS06870 0.11 +0.4
1,477,714 - ABIE51_RS06870 0.11 -0.1
1,477,787 + ABIE51_RS06870 0.29 -0.5
1,477,788 - ABIE51_RS06870 0.29 +0.9
1,477,808 - ABIE51_RS06870 0.34 +0.9
1,477,982 + ABIE51_RS06870 0.77 -0.3
1,477,982 + ABIE51_RS06870 0.77 -0.3
1,477,982 + ABIE51_RS06870 0.77 +2.1
1,477,983 - ABIE51_RS06870 0.77 +0.5
1,477,983 - ABIE51_RS06870 0.77 +0.3
1,477,983 - ABIE51_RS06870 0.77 +1.1
1,478,015 + ABIE51_RS06870 0.85 +0.2
1,478,015 + ABIE51_RS06870 0.85 +0.3
1,478,015 + ABIE51_RS06870 0.85 -0.0
1,478,016 - ABIE51_RS06870 0.85 -1.1
1,478,016 - ABIE51_RS06870 0.85 +0.7
1,478,021 + ABIE51_RS06870 0.86 +0.1
1,478,021 + ABIE51_RS06870 0.86 +0.2
1,478,075 + +0.2
1,478,199 + ABIE51_RS06875 0.19 +0.4
1,478,200 - ABIE51_RS06875 0.20 +0.4
1,478,212 + ABIE51_RS06875 0.21 +0.9
1,478,212 + ABIE51_RS06875 0.21 -0.4
1,478,212 + ABIE51_RS06875 0.21 +0.6
1,478,213 - ABIE51_RS06875 0.22 +0.2
1,478,269 + ABIE51_RS06875 0.30 -1.5
1,478,270 - ABIE51_RS06875 0.30 -1.5
1,478,270 - ABIE51_RS06875 0.30 +0.3
1,478,284 - ABIE51_RS06875 0.32 -0.4
1,478,458 + ABIE51_RS06875 0.58 -0.7
1,478,459 - ABIE51_RS06875 0.58 +1.4
1,478,459 - ABIE51_RS06875 0.58 -0.3
1,478,536 + ABIE51_RS06875 0.69 -0.2
1,478,536 + ABIE51_RS06875 0.69 +1.6
1,478,536 + ABIE51_RS06875 0.69 +0.1
1,478,537 - ABIE51_RS06875 0.69 +0.3
1,478,537 - ABIE51_RS06875 0.69 +0.4

Or see this region's nucleotide sequence