Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03050

Experiment: Ying_AminoAcid20 rep C; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03045 and ABIE51_RS03050 are separated by 136 nucleotidesABIE51_RS03050 and ABIE51_RS03055 are separated by 45 nucleotides ABIE51_RS03045: ABIE51_RS03045 - ATP-dependent protease ATPase subunit HslU, at 675,129 to 676,517 _RS03045 ABIE51_RS03050: ABIE51_RS03050 - OsmC family protein, at 676,654 to 677,100 _RS03050 ABIE51_RS03055: ABIE51_RS03055 - hypothetical protein, at 677,146 to 678,216 _RS03055 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2at 676.065 kb on + strand, within ABIE51_RS03045at 676.065 kb on + strand, within ABIE51_RS03045at 676.066 kb on - strand, within ABIE51_RS03045at 676.088 kb on + strand, within ABIE51_RS03045at 676.088 kb on + strand, within ABIE51_RS03045at 676.088 kb on + strand, within ABIE51_RS03045at 676.089 kb on - strand, within ABIE51_RS03045at 676.089 kb on - strand, within ABIE51_RS03045at 676.089 kb on - strand, within ABIE51_RS03045at 676.089 kb on - strand, within ABIE51_RS03045at 676.248 kb on + strand, within ABIE51_RS03045at 676.248 kb on + strand, within ABIE51_RS03045at 676.407 kb on + strandat 676.407 kb on + strandat 676.407 kb on + strandat 676.408 kb on - strandat 676.408 kb on - strandat 676.408 kb on - strandat 676.456 kb on - strandat 676.456 kb on - strandat 676.506 kb on + strandat 676.506 kb on + strandat 676.507 kb on - strandat 676.507 kb on - strandat 676.507 kb on - strandat 676.515 kb on + strandat 676.515 kb on + strandat 676.515 kb on + strandat 676.515 kb on + strandat 676.515 kb on + strandat 676.515 kb on + strandat 676.516 kb on - strandat 676.516 kb on - strandat 676.853 kb on + strand, within ABIE51_RS03050at 676.853 kb on + strand, within ABIE51_RS03050at 676.853 kb on + strand, within ABIE51_RS03050at 676.854 kb on - strand, within ABIE51_RS03050at 676.970 kb on + strand, within ABIE51_RS03050at 677.036 kb on + strand, within ABIE51_RS03050at 677.036 kb on + strand, within ABIE51_RS03050at 677.037 kb on - strand, within ABIE51_RS03050at 677.306 kb on + strand, within ABIE51_RS03055at 677.306 kb on + strand, within ABIE51_RS03055at 677.306 kb on + strand, within ABIE51_RS03055at 677.306 kb on + strand, within ABIE51_RS03055at 677.306 kb on + strand, within ABIE51_RS03055at 677.307 kb on - strand, within ABIE51_RS03055at 677.307 kb on - strand, within ABIE51_RS03055at 677.307 kb on - strand, within ABIE51_RS03055at 677.307 kb on - strand, within ABIE51_RS03055at 677.412 kb on - strand, within ABIE51_RS03055at 677.522 kb on + strand, within ABIE51_RS03055at 677.522 kb on + strand, within ABIE51_RS03055at 677.523 kb on - strand, within ABIE51_RS03055at 677.540 kb on + strand, within ABIE51_RS03055at 677.540 kb on + strand, within ABIE51_RS03055at 677.540 kb on + strand, within ABIE51_RS03055at 677.540 kb on + strand, within ABIE51_RS03055at 677.541 kb on - strand, within ABIE51_RS03055at 677.541 kb on - strand, within ABIE51_RS03055at 677.541 kb on - strand, within ABIE51_RS03055at 677.541 kb on - strand, within ABIE51_RS03055at 677.541 kb on - strand, within ABIE51_RS03055at 677.541 kb on - strand, within ABIE51_RS03055at 677.594 kb on + strand, within ABIE51_RS03055at 677.595 kb on - strand, within ABIE51_RS03055at 677.785 kb on + strand, within ABIE51_RS03055at 677.786 kb on - strand, within ABIE51_RS03055at 677.786 kb on - strand, within ABIE51_RS03055at 677.786 kb on - strand, within ABIE51_RS03055at 677.786 kb on - strand, within ABIE51_RS03055at 677.786 kb on - strand, within ABIE51_RS03055at 677.903 kb on + strand, within ABIE51_RS03055at 677.904 kb on - strand, within ABIE51_RS03055at 677.912 kb on + strand, within ABIE51_RS03055at 677.913 kb on - strand, within ABIE51_RS03055at 678.006 kb on - strand, within ABIE51_RS03055

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep C; time point 3
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676,065 + ABIE51_RS03045 0.67 +1.0
676,065 + ABIE51_RS03045 0.67 -0.5
676,066 - ABIE51_RS03045 0.67 +0.1
676,088 + ABIE51_RS03045 0.69 +0.6
676,088 + ABIE51_RS03045 0.69 +0.3
676,088 + ABIE51_RS03045 0.69 -0.3
676,089 - ABIE51_RS03045 0.69 +2.0
676,089 - ABIE51_RS03045 0.69 +0.3
676,089 - ABIE51_RS03045 0.69 +0.1
676,089 - ABIE51_RS03045 0.69 +0.3
676,248 + ABIE51_RS03045 0.81 +0.5
676,248 + ABIE51_RS03045 0.81 +0.4
676,407 + -0.0
676,407 + +0.5
676,407 + +0.9
676,408 - +0.1
676,408 - +0.4
676,408 - -0.3
676,456 - +0.4
676,456 - -0.7
676,506 + +0.1
676,506 + +0.5
676,507 - +0.5
676,507 - +0.6
676,507 - -2.4
676,515 + +1.0
676,515 + +1.1
676,515 + +0.3
676,515 + -1.0
676,515 + +0.5
676,515 + -0.8
676,516 - -0.3
676,516 - -0.5
676,853 + ABIE51_RS03050 0.45 +0.3
676,853 + ABIE51_RS03050 0.45 -0.4
676,853 + ABIE51_RS03050 0.45 -0.4
676,854 - ABIE51_RS03050 0.45 +0.1
676,970 + ABIE51_RS03050 0.71 +0.8
677,036 + ABIE51_RS03050 0.85 +0.5
677,036 + ABIE51_RS03050 0.85 +0.5
677,037 - ABIE51_RS03050 0.86 +0.0
677,306 + ABIE51_RS03055 0.15 -0.4
677,306 + ABIE51_RS03055 0.15 +0.4
677,306 + ABIE51_RS03055 0.15 -0.3
677,306 + ABIE51_RS03055 0.15 +0.7
677,306 + ABIE51_RS03055 0.15 +0.3
677,307 - ABIE51_RS03055 0.15 +0.3
677,307 - ABIE51_RS03055 0.15 +0.2
677,307 - ABIE51_RS03055 0.15 -1.3
677,307 - ABIE51_RS03055 0.15 +0.6
677,412 - ABIE51_RS03055 0.25 -0.0
677,522 + ABIE51_RS03055 0.35 -0.7
677,522 + ABIE51_RS03055 0.35 +0.7
677,523 - ABIE51_RS03055 0.35 +0.0
677,540 + ABIE51_RS03055 0.37 +0.5
677,540 + ABIE51_RS03055 0.37 -0.2
677,540 + ABIE51_RS03055 0.37 -0.2
677,540 + ABIE51_RS03055 0.37 -0.4
677,541 - ABIE51_RS03055 0.37 +0.9
677,541 - ABIE51_RS03055 0.37 +0.1
677,541 - ABIE51_RS03055 0.37 -0.3
677,541 - ABIE51_RS03055 0.37 -0.4
677,541 - ABIE51_RS03055 0.37 -0.4
677,541 - ABIE51_RS03055 0.37 +0.4
677,594 + ABIE51_RS03055 0.42 +0.1
677,595 - ABIE51_RS03055 0.42 -0.2
677,785 + ABIE51_RS03055 0.60 +0.2
677,786 - ABIE51_RS03055 0.60 +0.2
677,786 - ABIE51_RS03055 0.60 -1.1
677,786 - ABIE51_RS03055 0.60 +0.5
677,786 - ABIE51_RS03055 0.60 -0.2
677,786 - ABIE51_RS03055 0.60 +1.0
677,903 + ABIE51_RS03055 0.71 +2.4
677,904 - ABIE51_RS03055 0.71 -0.0
677,912 + ABIE51_RS03055 0.72 +0.7
677,913 - ABIE51_RS03055 0.72 -0.5
678,006 - ABIE51_RS03055 0.80 -0.0

Or see this region's nucleotide sequence