Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS09275

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS09265 and ABIE51_RS09270 are separated by 104 nucleotidesABIE51_RS09270 and ABIE51_RS09275 are separated by 169 nucleotidesABIE51_RS09275 and ABIE51_RS09280 are separated by 8 nucleotidesABIE51_RS09280 and ABIE51_RS09285 are separated by 300 nucleotides ABIE51_RS09265: ABIE51_RS09265 - wax ester/triacylglycerol synthase family O-acyltransferase, at 1,995,903 to 1,997,321 _RS09265 ABIE51_RS09270: ABIE51_RS09270 - OmpA family protein, at 1,997,426 to 1,998,142 _RS09270 ABIE51_RS09275: ABIE51_RS09275 - cytochrome c, at 1,998,312 to 1,998,767 _RS09275 ABIE51_RS09280: ABIE51_RS09280 - cytochrome c, at 1,998,776 to 1,999,177 _RS09280 ABIE51_RS09285: ABIE51_RS09285 - efflux RND transporter periplasmic adaptor subunit, at 1,999,478 to 2,000,611 _RS09285 Position (kb) 1998 1999Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1997.365 kb on - strandat 1997.365 kb on - strandat 1997.395 kb on + strandat 1997.507 kb on + strand, within ABIE51_RS09270at 1997.507 kb on + strand, within ABIE51_RS09270at 1997.507 kb on + strand, within ABIE51_RS09270at 1997.507 kb on + strand, within ABIE51_RS09270at 1997.507 kb on + strand, within ABIE51_RS09270at 1997.508 kb on - strand, within ABIE51_RS09270at 1997.508 kb on - strand, within ABIE51_RS09270at 1997.508 kb on - strand, within ABIE51_RS09270at 1997.510 kb on + strand, within ABIE51_RS09270at 1997.714 kb on + strand, within ABIE51_RS09270at 1997.714 kb on + strand, within ABIE51_RS09270at 1997.714 kb on + strand, within ABIE51_RS09270at 1997.714 kb on + strand, within ABIE51_RS09270at 1997.714 kb on + strand, within ABIE51_RS09270at 1997.715 kb on - strand, within ABIE51_RS09270at 1997.715 kb on - strand, within ABIE51_RS09270at 1997.715 kb on - strand, within ABIE51_RS09270at 1997.897 kb on + strand, within ABIE51_RS09270at 1997.897 kb on + strand, within ABIE51_RS09270at 1997.897 kb on + strand, within ABIE51_RS09270at 1997.897 kb on + strand, within ABIE51_RS09270at 1997.898 kb on - strand, within ABIE51_RS09270at 1997.954 kb on + strand, within ABIE51_RS09270at 1997.954 kb on + strand, within ABIE51_RS09270at 1997.954 kb on + strand, within ABIE51_RS09270at 1997.954 kb on + strand, within ABIE51_RS09270at 1997.955 kb on - strand, within ABIE51_RS09270at 1997.955 kb on - strand, within ABIE51_RS09270at 1997.955 kb on - strand, within ABIE51_RS09270at 1997.955 kb on - strand, within ABIE51_RS09270at 1997.955 kb on - strand, within ABIE51_RS09270at 1997.999 kb on + strand, within ABIE51_RS09270at 1997.999 kb on + strand, within ABIE51_RS09270at 1997.999 kb on + strand, within ABIE51_RS09270at 1997.999 kb on + strand, within ABIE51_RS09270at 1998.000 kb on - strand, within ABIE51_RS09270at 1998.000 kb on - strand, within ABIE51_RS09270at 1998.292 kb on + strandat 1998.292 kb on + strandat 1998.368 kb on - strand, within ABIE51_RS09275at 1998.368 kb on - strand, within ABIE51_RS09275at 1998.368 kb on - strand, within ABIE51_RS09275at 1998.452 kb on - strand, within ABIE51_RS09275at 1998.452 kb on - strand, within ABIE51_RS09275at 1998.475 kb on + strand, within ABIE51_RS09275at 1998.475 kb on + strand, within ABIE51_RS09275at 1998.476 kb on - strand, within ABIE51_RS09275at 1998.481 kb on + strand, within ABIE51_RS09275at 1998.481 kb on + strand, within ABIE51_RS09275at 1998.481 kb on + strand, within ABIE51_RS09275at 1998.481 kb on + strand, within ABIE51_RS09275at 1998.481 kb on + strand, within ABIE51_RS09275at 1998.481 kb on + strand, within ABIE51_RS09275at 1998.481 kb on + strand, within ABIE51_RS09275at 1998.482 kb on - strand, within ABIE51_RS09275at 1998.482 kb on - strand, within ABIE51_RS09275at 1998.482 kb on - strand, within ABIE51_RS09275at 1998.482 kb on - strand, within ABIE51_RS09275at 1998.482 kb on - strand, within ABIE51_RS09275at 1998.484 kb on + strand, within ABIE51_RS09275at 1998.485 kb on - strand, within ABIE51_RS09275at 1998.505 kb on + strand, within ABIE51_RS09275at 1998.505 kb on + strand, within ABIE51_RS09275at 1998.879 kb on + strand, within ABIE51_RS09280at 1998.879 kb on + strand, within ABIE51_RS09280at 1998.879 kb on + strand, within ABIE51_RS09280at 1998.879 kb on + strand, within ABIE51_RS09280at 1998.903 kb on + strand, within ABIE51_RS09280at 1998.903 kb on + strand, within ABIE51_RS09280at 1998.903 kb on + strand, within ABIE51_RS09280at 1998.903 kb on + strand, within ABIE51_RS09280at 1998.904 kb on - strand, within ABIE51_RS09280at 1998.940 kb on - strand, within ABIE51_RS09280at 1998.940 kb on - strand, within ABIE51_RS09280at 1998.940 kb on - strand, within ABIE51_RS09280at 1998.949 kb on - strand, within ABIE51_RS09280at 1998.993 kb on + strand, within ABIE51_RS09280at 1998.993 kb on + strand, within ABIE51_RS09280at 1998.993 kb on + strand, within ABIE51_RS09280at 1998.993 kb on + strand, within ABIE51_RS09280at 1998.993 kb on + strand, within ABIE51_RS09280at 1998.993 kb on + strand, within ABIE51_RS09280at 1998.993 kb on + strand, within ABIE51_RS09280at 1998.994 kb on - strand, within ABIE51_RS09280at 1998.994 kb on - strand, within ABIE51_RS09280at 1998.994 kb on - strand, within ABIE51_RS09280at 1999.185 kb on + strandat 1999.185 kb on + strandat 1999.185 kb on + strandat 1999.186 kb on - strandat 1999.186 kb on - strandat 1999.207 kb on - strandat 1999.219 kb on + strandat 1999.219 kb on + strandat 1999.220 kb on - strandat 1999.220 kb on - strandat 1999.220 kb on - strandat 1999.220 kb on - strandat 1999.248 kb on - strandat 1999.248 kb on - strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.274 kb on + strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.275 kb on - strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.276 kb on + strandat 1999.277 kb on - strandat 1999.422 kb on + strandat 1999.431 kb on - strandat 1999.676 kb on + strand, within ABIE51_RS09285at 1999.676 kb on + strand, within ABIE51_RS09285at 1999.676 kb on + strand, within ABIE51_RS09285at 1999.676 kb on + strand, within ABIE51_RS09285at 1999.677 kb on - strand, within ABIE51_RS09285at 1999.677 kb on - strand, within ABIE51_RS09285at 1999.677 kb on - strand, within ABIE51_RS09285at 1999.677 kb on - strand, within ABIE51_RS09285

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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1,997,365 - +0.8
1,997,365 - +0.3
1,997,395 + -1.0
1,997,507 + ABIE51_RS09270 0.11 -0.4
1,997,507 + ABIE51_RS09270 0.11 +0.6
1,997,507 + ABIE51_RS09270 0.11 -0.8
1,997,507 + ABIE51_RS09270 0.11 -0.2
1,997,507 + ABIE51_RS09270 0.11 -0.2
1,997,508 - ABIE51_RS09270 0.11 -0.1
1,997,508 - ABIE51_RS09270 0.11 -0.2
1,997,508 - ABIE51_RS09270 0.11 -0.9
1,997,510 + ABIE51_RS09270 0.12 -0.3
1,997,714 + ABIE51_RS09270 0.40 -0.4
1,997,714 + ABIE51_RS09270 0.40 -0.9
1,997,714 + ABIE51_RS09270 0.40 -1.2
1,997,714 + ABIE51_RS09270 0.40 -0.0
1,997,714 + ABIE51_RS09270 0.40 +0.4
1,997,715 - ABIE51_RS09270 0.40 -0.1
1,997,715 - ABIE51_RS09270 0.40 +1.6
1,997,715 - ABIE51_RS09270 0.40 +0.6
1,997,897 + ABIE51_RS09270 0.66 -0.7
1,997,897 + ABIE51_RS09270 0.66 +0.4
1,997,897 + ABIE51_RS09270 0.66 -0.3
1,997,897 + ABIE51_RS09270 0.66 -0.2
1,997,898 - ABIE51_RS09270 0.66 -0.4
1,997,954 + ABIE51_RS09270 0.74 -2.2
1,997,954 + ABIE51_RS09270 0.74 -0.3
1,997,954 + ABIE51_RS09270 0.74 -1.0
1,997,954 + ABIE51_RS09270 0.74 -0.2
1,997,955 - ABIE51_RS09270 0.74 -0.9
1,997,955 - ABIE51_RS09270 0.74 +0.8
1,997,955 - ABIE51_RS09270 0.74 -0.5
1,997,955 - ABIE51_RS09270 0.74 -0.5
1,997,955 - ABIE51_RS09270 0.74 +0.6
1,997,999 + ABIE51_RS09270 0.80 +0.8
1,997,999 + ABIE51_RS09270 0.80 -0.8
1,997,999 + ABIE51_RS09270 0.80 -0.4
1,997,999 + ABIE51_RS09270 0.80 -1.3
1,998,000 - ABIE51_RS09270 0.80 -2.4
1,998,000 - ABIE51_RS09270 0.80 -0.0
1,998,292 + -1.0
1,998,292 + -0.2
1,998,368 - ABIE51_RS09275 0.12 -2.8
1,998,368 - ABIE51_RS09275 0.12 -4.5
1,998,368 - ABIE51_RS09275 0.12 -2.8
1,998,452 - ABIE51_RS09275 0.31 -3.5
1,998,452 - ABIE51_RS09275 0.31 -1.8
1,998,475 + ABIE51_RS09275 0.36 -4.2
1,998,475 + ABIE51_RS09275 0.36 -4.9
1,998,476 - ABIE51_RS09275 0.36 -3.0
1,998,481 + ABIE51_RS09275 0.37 -1.2
1,998,481 + ABIE51_RS09275 0.37 -5.0
1,998,481 + ABIE51_RS09275 0.37 -4.1
1,998,481 + ABIE51_RS09275 0.37 -3.6
1,998,481 + ABIE51_RS09275 0.37 -5.3
1,998,481 + ABIE51_RS09275 0.37 -4.1
1,998,481 + ABIE51_RS09275 0.37 -1.8
1,998,482 - ABIE51_RS09275 0.37 -5.1
1,998,482 - ABIE51_RS09275 0.37 -1.8
1,998,482 - ABIE51_RS09275 0.37 -1.4
1,998,482 - ABIE51_RS09275 0.37 -2.6
1,998,482 - ABIE51_RS09275 0.37 -3.9
1,998,484 + ABIE51_RS09275 0.38 -2.5
1,998,485 - ABIE51_RS09275 0.38 -2.2
1,998,505 + ABIE51_RS09275 0.42 -3.0
1,998,505 + ABIE51_RS09275 0.42 -2.2
1,998,879 + ABIE51_RS09280 0.26 -3.0
1,998,879 + ABIE51_RS09280 0.26 -4.2
1,998,879 + ABIE51_RS09280 0.26 -2.8
1,998,879 + ABIE51_RS09280 0.26 -5.6
1,998,903 + ABIE51_RS09280 0.32 -4.7
1,998,903 + ABIE51_RS09280 0.32 -2.9
1,998,903 + ABIE51_RS09280 0.32 -3.2
1,998,903 + ABIE51_RS09280 0.32 -4.1
1,998,904 - ABIE51_RS09280 0.32 -4.6
1,998,940 - ABIE51_RS09280 0.41 -4.6
1,998,940 - ABIE51_RS09280 0.41 -1.8
1,998,940 - ABIE51_RS09280 0.41 -2.2
1,998,949 - ABIE51_RS09280 0.43 -4.7
1,998,993 + ABIE51_RS09280 0.54 -3.6
1,998,993 + ABIE51_RS09280 0.54 -1.9
1,998,993 + ABIE51_RS09280 0.54 -3.8
1,998,993 + ABIE51_RS09280 0.54 -2.7
1,998,993 + ABIE51_RS09280 0.54 -4.2
1,998,993 + ABIE51_RS09280 0.54 -4.3
1,998,993 + ABIE51_RS09280 0.54 -3.4
1,998,994 - ABIE51_RS09280 0.54 -2.2
1,998,994 - ABIE51_RS09280 0.54 -3.5
1,998,994 - ABIE51_RS09280 0.54 -4.4
1,999,185 + -2.2
1,999,185 + -3.3
1,999,185 + -4.1
1,999,186 - -2.3
1,999,186 - -1.9
1,999,207 - +0.1
1,999,219 + -3.5
1,999,219 + -3.0
1,999,220 - -0.2
1,999,220 - -0.3
1,999,220 - +0.1
1,999,220 - +0.1
1,999,248 - +0.1
1,999,248 - -0.0
1,999,274 + -3.7
1,999,274 + -3.1
1,999,274 + -2.9
1,999,274 + -3.7
1,999,274 + -2.8
1,999,274 + -4.3
1,999,274 + -2.8
1,999,274 + -4.2
1,999,274 + -3.8
1,999,274 + -3.1
1,999,275 - +0.0
1,999,275 - +0.2
1,999,275 - -0.1
1,999,275 - +0.1
1,999,275 - -0.3
1,999,275 - -0.0
1,999,275 - +0.8
1,999,275 - -0.0
1,999,275 - -0.8
1,999,275 - +0.0
1,999,275 - -0.2
1,999,276 + -0.1
1,999,276 + -0.8
1,999,276 + -0.3
1,999,276 + +0.0
1,999,276 + +0.0
1,999,276 + +0.6
1,999,276 + -0.6
1,999,276 + +0.1
1,999,276 + -0.5
1,999,277 - +0.6
1,999,422 + -0.2
1,999,431 - +0.4
1,999,676 + ABIE51_RS09285 0.17 +1.0
1,999,676 + ABIE51_RS09285 0.17 -0.7
1,999,676 + ABIE51_RS09285 0.17 -0.4
1,999,676 + ABIE51_RS09285 0.17 -0.4
1,999,677 - ABIE51_RS09285 0.18 +0.3
1,999,677 - ABIE51_RS09285 0.18 +0.0
1,999,677 - ABIE51_RS09285 0.18 -0.2
1,999,677 - ABIE51_RS09285 0.18 -0.1

Or see this region's nucleotide sequence