Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08810

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,869,748	+		ABIE51_RS08805	0.71	-0.4
1,869,839	-		ABIE51_RS08805	0.74	-1.6
1,870,075	+		ABIE51_RS08805	0.82	+0.4
1,870,076	-		ABIE51_RS08805	0.82	-0.4
1,870,096	+		ABIE51_RS08805	0.82	-0.1
1,870,097	-		ABIE51_RS08805	0.82	-0.4
1,870,132	+		ABIE51_RS08805	0.83	+0.4
1,870,132	+		ABIE51_RS08805	0.83	+0.1
1,870,132	+		ABIE51_RS08805	0.83	-0.2
1,870,132	+		ABIE51_RS08805	0.83	+0.5
1,870,132	+		ABIE51_RS08805	0.83	-0.1
1,870,132	+		ABIE51_RS08805	0.83	+0.2
1,870,132	+		ABIE51_RS08805	0.83	-0.4
1,870,132	+		ABIE51_RS08805	0.83	+1.2
1,870,133	-		ABIE51_RS08805	0.84	-0.7
1,870,133	-		ABIE51_RS08805	0.84	-0.2
1,870,133	-		ABIE51_RS08805	0.84	-1.0
1,870,133	-		ABIE51_RS08805	0.84	-1.2
1,870,133	-		ABIE51_RS08805	0.84	-0.8
1,870,138	+		ABIE51_RS08805	0.84	+0.1
1,870,138	+		ABIE51_RS08805	0.84	-0.4
1,870,138	+		ABIE51_RS08805	0.84	+0.1
1,870,138	+		ABIE51_RS08805	0.84	-0.0
1,870,139	-		ABIE51_RS08805	0.84	-0.7
1,870,139	-		ABIE51_RS08805	0.84	-0.4
1,870,261	+		ABIE51_RS08805	0.88	+0.7
1,870,261	+		ABIE51_RS08805	0.88	+0.9
1,870,261	+		ABIE51_RS08805	0.88	+2.4
1,870,261	+		ABIE51_RS08805	0.88	+0.7
1,870,261	+		ABIE51_RS08805	0.88	+0.1
1,870,261	+		ABIE51_RS08805	0.88	-0.0
1,870,262	-		ABIE51_RS08805	0.88	-0.7
1,870,262	-		ABIE51_RS08805	0.88	-0.6
1,870,262	-		ABIE51_RS08805	0.88	-0.5
1,870,324	+		ABIE51_RS08805	0.90	+0.6
1,870,324	+		ABIE51_RS08805	0.90	+0.3
1,870,378	+				+0.6
1,870,378	+				+0.7
1,870,378	+				+0.6
1,870,378	+				+0.7
1,870,379	-				-0.3
1,870,379	-				-0.3
1,870,396	+				+0.7
1,870,396	+				+0.6
1,870,396	+				+1.0
1,870,396	+				+0.7
1,870,488	-				+0.3
1,870,488	-				-0.7
1,870,504	+				+0.7
1,870,504	+				-0.6
1,870,504	+				+1.2
1,870,504	+				+0.8
1,870,505	-				-0.4
1,870,505	-				+0.7
1,870,505	-				-0.8
1,870,514	-				-0.9
1,870,522	+				+0.4
1,870,523	-				-0.5
1,870,673	-				-1.0
1,870,673	-				-1.2
1,870,745	+				-2.7
1,871,156	-		ABIE51_RS08810	0.26	-2.6
1,871,156	-		ABIE51_RS08810	0.26	-0.8
1,871,167	+		ABIE51_RS08810	0.27	-5.1
1,871,167	+		ABIE51_RS08810	0.27	-3.2
1,871,167	+		ABIE51_RS08810	0.27	-2.3
1,871,167	+		ABIE51_RS08810	0.27	-3.8
1,871,167	+		ABIE51_RS08810	0.27	-2.2
1,871,168	-		ABIE51_RS08810	0.27	-1.7
1,871,168	-		ABIE51_RS08810	0.27	-3.6
1,871,169	-		ABIE51_RS08810	0.27	-4.0
1,871,170	+		ABIE51_RS08810	0.27	-2.6
1,871,171	-		ABIE51_RS08810	0.27	-1.8
1,871,204	-		ABIE51_RS08810	0.29	-3.2
1,871,275	+		ABIE51_RS08810	0.33	-2.2
1,871,275	+		ABIE51_RS08810	0.33	-1.8
1,871,276	-		ABIE51_RS08810	0.33	-1.2
1,871,278	+		ABIE51_RS08810	0.33	-2.8
1,871,278	+		ABIE51_RS08810	0.33	-3.4
1,871,278	+		ABIE51_RS08810	0.33	-2.9
1,871,278	+		ABIE51_RS08810	0.33	-2.3
1,871,278	+		ABIE51_RS08810	0.33	-3.0
1,871,279	-		ABIE51_RS08810	0.33	-2.6
1,871,279	-		ABIE51_RS08810	0.33	-2.5
1,871,279	-		ABIE51_RS08810	0.33	-4.0
1,871,279	-		ABIE51_RS08810	0.33	-3.4
1,871,332	+		ABIE51_RS08810	0.37	-2.5
1,871,333	-		ABIE51_RS08810	0.37	-2.8
1,871,333	-		ABIE51_RS08810	0.37	-1.4
1,871,333	-		ABIE51_RS08810	0.37	-0.6
1,871,333	-		ABIE51_RS08810	0.37	-2.2
1,871,431	+		ABIE51_RS08810	0.43	-3.1
1,871,431	+		ABIE51_RS08810	0.43	-0.8
1,871,452	+		ABIE51_RS08810	0.44	-2.6
1,871,452	+		ABIE51_RS08810	0.44	-3.0
1,871,452	+		ABIE51_RS08810	0.44	-1.9
1,871,452	+		ABIE51_RS08810	0.44	-1.8
1,871,453	-		ABIE51_RS08810	0.44	-2.0
1,871,453	-		ABIE51_RS08810	0.44	-0.6
1,871,453	-		ABIE51_RS08810	0.44	-2.5
1,871,453	-		ABIE51_RS08810	0.44	-2.0
1,871,453	-		ABIE51_RS08810	0.44	-1.8
1,871,453	-		ABIE51_RS08810	0.44	-3.4
1,871,453	-		ABIE51_RS08810	0.44	-2.6
1,871,521	+		ABIE51_RS08810	0.48	-1.5
1,871,521	+		ABIE51_RS08810	0.48	-2.8
1,871,521	+		ABIE51_RS08810	0.48	-3.3
1,871,521	+		ABIE51_RS08810	0.48	-1.4
1,871,522	-		ABIE51_RS08810	0.48	-0.9
1,871,522	-		ABIE51_RS08810	0.48	-2.6
1,871,557	+		ABIE51_RS08810	0.50	-3.1
1,871,557	+		ABIE51_RS08810	0.50	-1.8
1,871,557	+		ABIE51_RS08810	0.50	-2.2
1,871,557	+		ABIE51_RS08810	0.50	-3.3
1,871,558	-		ABIE51_RS08810	0.50	-2.8
1,871,558	-		ABIE51_RS08810	0.50	-2.7
1,871,558	-		ABIE51_RS08810	0.50	-2.5
1,871,558	-		ABIE51_RS08810	0.50	-3.4
1,871,558	-		ABIE51_RS08810	0.50	-1.5
1,871,558	-		ABIE51_RS08810	0.50	-3.0
1,871,590	+		ABIE51_RS08810	0.52	-2.0
1,871,590	+		ABIE51_RS08810	0.52	-2.5
1,871,591	-		ABIE51_RS08810	0.52	-3.5
1,871,591	-		ABIE51_RS08810	0.52	-2.8
1,871,632	+		ABIE51_RS08810	0.55	-3.2
1,871,632	+		ABIE51_RS08810	0.55	-2.4
1,871,632	+		ABIE51_RS08810	0.55	-3.8
1,871,632	+		ABIE51_RS08810	0.55	-3.6
1,871,633	-		ABIE51_RS08810	0.55	-1.8
1,871,633	-		ABIE51_RS08810	0.55	-2.1
1,871,633	-		ABIE51_RS08810	0.55	-1.2
1,871,633	-		ABIE51_RS08810	0.55	-1.8
1,871,633	-		ABIE51_RS08810	0.55	-2.2
1,871,633	-		ABIE51_RS08810	0.55	-1.3
1,871,633	-		ABIE51_RS08810	0.55	-1.4
1,871,633	-		ABIE51_RS08810	0.55	-3.6
1,871,633	-		ABIE51_RS08810	0.55	-0.2
1,871,656	+		ABIE51_RS08810	0.56	-2.2
1,871,657	-		ABIE51_RS08810	0.56	-0.7
1,871,699	-		ABIE51_RS08810	0.59	-3.3
1,871,699	-		ABIE51_RS08810	0.59	-1.5
1,871,699	-		ABIE51_RS08810	0.59	-3.0
1,871,731	+		ABIE51_RS08810	0.61	-2.3
1,871,732	-		ABIE51_RS08810	0.61	-2.5
1,871,732	-		ABIE51_RS08810	0.61	-3.5
1,871,732	-		ABIE51_RS08810	0.61	-3.4
1,871,821	+		ABIE51_RS08810	0.66	-2.8
1,871,951	-		ABIE51_RS08810	0.74	-2.8
1,871,960	-		ABIE51_RS08810	0.75	-2.5
1,871,960	-		ABIE51_RS08810	0.75	-3.3
1,871,965	+		ABIE51_RS08810	0.75	-2.6
1,871,966	-		ABIE51_RS08810	0.75	-1.8
1,871,974	+		ABIE51_RS08810	0.76	-2.5
1,871,975	-		ABIE51_RS08810	0.76	-3.1
1,872,070	+		ABIE51_RS08810	0.82	-2.8
1,872,071	-		ABIE51_RS08810	0.82	-1.8
1,872,115	+		ABIE51_RS08810	0.84	-2.8
1,872,116	-		ABIE51_RS08810	0.84	-2.5
1,872,116	-		ABIE51_RS08810	0.84	-2.1
1,872,157	+		ABIE51_RS08810	0.87	-1.2
1,872,157	+		ABIE51_RS08810	0.87	-2.5
1,872,157	+		ABIE51_RS08810	0.87	-3.3
1,872,158	-		ABIE51_RS08810	0.87	-5.4
1,872,158	-		ABIE51_RS08810	0.87	-2.2
1,872,158	-		ABIE51_RS08810	0.87	-2.3
1,872,158	-		ABIE51_RS08810	0.87	-2.0
1,872,158	-		ABIE51_RS08810	0.87	-3.0
1,872,158	-		ABIE51_RS08810	0.87	-2.8
1,872,158	-		ABIE51_RS08810	0.87	-2.6
1,872,748	-		ABIE51_RS08815	0.26	-0.2
1,872,792	+		ABIE51_RS08815	0.30	-1.5
1,872,792	+		ABIE51_RS08815	0.30	-2.4
1,872,792	+		ABIE51_RS08815	0.30	-1.6
1,872,792	+		ABIE51_RS08815	0.30	-1.8
1,872,793	-		ABIE51_RS08815	0.30	-1.8
1,872,793	-		ABIE51_RS08815	0.30	-2.7
1,872,793	-		ABIE51_RS08815	0.30	-3.2
1,872,793	-		ABIE51_RS08815	0.30	-2.2
1,872,793	-		ABIE51_RS08815	0.30	-1.5
1,872,793	-		ABIE51_RS08815	0.30	-3.2
1,872,808	-		ABIE51_RS08815	0.31	-1.8
1,872,808	-		ABIE51_RS08815	0.31	-2.2
1,872,831	+		ABIE51_RS08815	0.33	-1.9
1,872,832	-		ABIE51_RS08815	0.33	-2.1
1,872,966	+		ABIE51_RS08815	0.43	-2.3
1,872,966	+		ABIE51_RS08815	0.43	-2.2
1,872,966	+		ABIE51_RS08815	0.43	-2.6
1,873,075	-		ABIE51_RS08815	0.52	-1.9
1,873,075	-		ABIE51_RS08815	0.52	-1.7
1,873,170	+		ABIE51_RS08815	0.60	-2.7
1,873,170	+		ABIE51_RS08815	0.60	-3.0
1,873,170	+		ABIE51_RS08815	0.60	-1.9
1,873,170	+		ABIE51_RS08815	0.60	-2.2
1,873,171	-		ABIE51_RS08815	0.60	-3.3
1,873,171	-		ABIE51_RS08815	0.60	-1.4
1,873,171	-		ABIE51_RS08815	0.60	-2.2
1,873,171	-		ABIE51_RS08815	0.60	-1.6
1,873,353	+		ABIE51_RS08815	0.74	-1.2
1,873,354	-		ABIE51_RS08815	0.74	-2.5
1,873,354	-		ABIE51_RS08815	0.74	-2.4