Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS06785

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
1,450,179	+				+0.1
1,450,179	+				+0.8
1,450,179	+				+0.9
1,450,180	-				+0.6
1,450,198	+				-0.1
1,450,198	+				-0.3
1,450,198	+				+1.0
1,450,199	-				-2.1
1,450,199	-				-1.1
1,450,199	-				-2.0
1,450,199	-				-1.4
1,450,199	-				-1.0
1,450,199	-				-0.7
1,450,330	+		ABIE51_RS06780	0.22	-1.8
1,450,330	+		ABIE51_RS06780	0.22	+1.2
1,450,330	+		ABIE51_RS06780	0.22	-0.5
1,450,330	+		ABIE51_RS06780	0.22	+1.0
1,450,330	+		ABIE51_RS06780	0.22	+0.3
1,450,330	+		ABIE51_RS06780	0.22	+0.2
1,450,331	-		ABIE51_RS06780	0.22	-0.7
1,450,331	-		ABIE51_RS06780	0.22	-1.1
1,450,331	-		ABIE51_RS06780	0.22	-1.2
1,450,331	-		ABIE51_RS06780	0.22	-0.6
1,450,331	-		ABIE51_RS06780	0.22	+0.0
1,450,528	+		ABIE51_RS06780	0.54	+1.1
1,450,529	-		ABIE51_RS06780	0.54	-3.1
1,450,529	-		ABIE51_RS06780	0.54	-1.0
1,450,615	+		ABIE51_RS06780	0.68	+0.2
1,450,615	+		ABIE51_RS06780	0.68	-0.1
1,450,615	+		ABIE51_RS06780	0.68	+1.1
1,450,616	-		ABIE51_RS06780	0.68	-0.4
1,450,655	-		ABIE51_RS06780	0.74	+0.3
1,450,655	-		ABIE51_RS06780	0.74	+0.3
1,450,705	+		ABIE51_RS06780	0.82	+1.3
1,450,706	-		ABIE51_RS06780	0.82	-0.0
1,450,706	-		ABIE51_RS06780	0.82	+0.1
1,450,706	-		ABIE51_RS06780	0.82	-0.4
1,450,706	-		ABIE51_RS06780	0.82	-0.1
1,450,706	-		ABIE51_RS06780	0.82	+0.4
1,450,732	+		ABIE51_RS06780	0.87	+0.4
1,450,733	-		ABIE51_RS06780	0.87	+0.4
1,450,733	-		ABIE51_RS06780	0.87	+0.2
1,450,972	-				-1.4
1,450,972	-				-3.3
1,451,075	+				-1.0
1,451,075	+				-1.5
1,451,075	+				-3.9
1,451,075	+				-1.0
1,451,075	+				-4.1
1,451,075	+				-1.6
1,451,075	+				-2.5
1,451,075	+				-3.1
1,451,076	-				-1.9
1,451,076	-				-3.0
1,451,076	-				-3.1
1,451,076	-				-3.2
1,451,076	-				-2.6
1,451,076	-				-3.3
1,451,076	-				-3.7
1,451,076	-				-4.4
1,451,076	-				-2.3
1,451,076	-				-1.0
1,451,076	-				-2.7
1,451,283	+		ABIE51_RS06785	0.22	-3.1
1,451,283	+		ABIE51_RS06785	0.22	-1.9
1,451,284	-		ABIE51_RS06785	0.22	-1.0
1,451,284	-		ABIE51_RS06785	0.22	-2.5
1,451,284	-		ABIE51_RS06785	0.22	-2.3
1,451,354	+		ABIE51_RS06785	0.27	-3.4
1,451,477	+		ABIE51_RS06785	0.35	-1.8
1,451,477	+		ABIE51_RS06785	0.35	-2.6
1,451,477	+		ABIE51_RS06785	0.35	-1.6
1,451,537	+		ABIE51_RS06785	0.39	-3.0
1,451,537	+		ABIE51_RS06785	0.39	-2.0
1,451,538	-		ABIE51_RS06785	0.39	-3.2
1,451,538	-		ABIE51_RS06785	0.39	-3.0
1,451,603	+		ABIE51_RS06785	0.44	-3.8
1,451,604	-		ABIE51_RS06785	0.44	-3.4
1,451,604	-		ABIE51_RS06785	0.44	-2.6
1,451,604	-		ABIE51_RS06785	0.44	-2.3
1,451,635	-		ABIE51_RS06785	0.46	-3.0
1,451,720	+		ABIE51_RS06785	0.51	-0.2
1,451,720	+		ABIE51_RS06785	0.51	-2.0
1,451,721	-		ABIE51_RS06785	0.51	-2.2
1,451,721	-		ABIE51_RS06785	0.51	-2.4
1,451,721	-		ABIE51_RS06785	0.51	-2.6
1,451,721	-		ABIE51_RS06785	0.51	-2.3
1,451,721	-		ABIE51_RS06785	0.51	-2.0
1,451,721	-		ABIE51_RS06785	0.51	-2.4
1,451,721	-		ABIE51_RS06785	0.51	-3.5
1,451,753	+		ABIE51_RS06785	0.54	-3.2
1,451,753	+		ABIE51_RS06785	0.54	-2.0
1,451,754	-		ABIE51_RS06785	0.54	-2.3
1,451,754	-		ABIE51_RS06785	0.54	-3.2
1,451,783	+		ABIE51_RS06785	0.56	-1.6
1,451,784	-		ABIE51_RS06785	0.56	-4.7
1,451,784	-		ABIE51_RS06785	0.56	-3.3
1,451,936	+		ABIE51_RS06785	0.66	-2.4
1,451,937	-		ABIE51_RS06785	0.66	-4.3
1,451,937	-		ABIE51_RS06785	0.66	-2.2
1,451,937	-		ABIE51_RS06785	0.66	-2.5
1,451,937	-		ABIE51_RS06785	0.66	-1.6
1,452,239	+		ABIE51_RS06785	0.86	-2.8
1,452,239	+		ABIE51_RS06785	0.86	-2.4
1,452,239	+		ABIE51_RS06785	0.86	-1.5
1,452,239	+		ABIE51_RS06785	0.86	-4.3
1,452,239	+		ABIE51_RS06785	0.86	-4.0
1,452,240	-		ABIE51_RS06785	0.86	-1.2
1,452,240	-		ABIE51_RS06785	0.86	-2.5
1,452,240	-		ABIE51_RS06785	0.86	-2.6
1,452,332	-				-3.3
1,452,410	+				-1.7
1,452,411	-				-3.2
1,452,608	+				+0.1
1,452,608	+				+0.2
1,452,609	-				-0.2
1,452,671	+				+0.7
1,452,671	+				-0.6
1,452,671	+				+0.4
1,452,671	+				-0.2
1,452,671	+				-0.3
1,452,675	+				+0.2
1,452,675	+				+0.3
1,452,675	+				+0.5
1,452,676	-				-0.3
1,452,676	-				-0.4
1,452,676	-				+0.3
1,452,923	+				+0.1
1,452,923	+				+0.0
1,452,924	-				-1.0
1,453,191	+		ABIE51_RS06790	0.15	-0.2
1,453,192	-		ABIE51_RS06790	0.15	-0.4
1,453,192	-		ABIE51_RS06790	0.15	-0.7
1,453,192	-		ABIE51_RS06790	0.15	-0.4
1,453,298	+		ABIE51_RS06790	0.18	-0.1
1,453,298	+		ABIE51_RS06790	0.18	-0.5
1,453,298	+		ABIE51_RS06790	0.18	-0.3
1,453,299	-		ABIE51_RS06790	0.18	+0.3
1,453,299	-		ABIE51_RS06790	0.18	-0.6