Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04790

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04785 and ABIE51_RS04790 are separated by 298 nucleotidesABIE51_RS04790 and ABIE51_RS04795 are separated by 78 nucleotides ABIE51_RS04785: ABIE51_RS04785 - M23 family metallopeptidase, at 1,034,301 to 1,035,224 _RS04785 ABIE51_RS04790: ABIE51_RS04790 - preprotein translocase subunit SecA, at 1,035,523 to 1,038,252 _RS04790 ABIE51_RS04795: ABIE51_RS04795 - Nudix family hydrolase, at 1,038,331 to 1,039,335 _RS04795 Position (kb) 1035 1036 1037 1038 1039Strain fitness (log2 ratio) -3 -2 -1 0 1at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.835 kb on + strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.836 kb on - strand, within ABIE51_RS04785at 1034.961 kb on + strand, within ABIE51_RS04785at 1034.961 kb on + strand, within ABIE51_RS04785at 1034.962 kb on - strand, within ABIE51_RS04785at 1034.962 kb on - strand, within ABIE51_RS04785at 1035.018 kb on + strand, within ABIE51_RS04785at 1035.019 kb on - strand, within ABIE51_RS04785at 1035.255 kb on - strandat 1035.255 kb on - strandat 1035.255 kb on - strandat 1035.255 kb on - strandat 1035.255 kb on - strandat 1035.351 kb on + strandat 1035.351 kb on + strandat 1035.352 kb on - strandat 1035.352 kb on - strandat 1035.382 kb on + strandat 1035.382 kb on + strandat 1035.382 kb on + strandat 1035.382 kb on + strandat 1035.500 kb on + strandat 1038.223 kb on + strandat 1038.223 kb on + strandat 1038.223 kb on + strandat 1038.223 kb on + strandat 1038.224 kb on + strandat 1038.566 kb on + strand, within ABIE51_RS04795at 1038.566 kb on + strand, within ABIE51_RS04795at 1038.566 kb on + strand, within ABIE51_RS04795at 1038.566 kb on + strand, within ABIE51_RS04795at 1038.566 kb on + strand, within ABIE51_RS04795at 1038.566 kb on + strand, within ABIE51_RS04795at 1038.567 kb on - strand, within ABIE51_RS04795at 1038.567 kb on - strand, within ABIE51_RS04795at 1038.567 kb on - strand, within ABIE51_RS04795at 1038.567 kb on - strand, within ABIE51_RS04795at 1038.567 kb on - strand, within ABIE51_RS04795at 1038.567 kb on - strand, within ABIE51_RS04795at 1038.730 kb on + strand, within ABIE51_RS04795at 1038.730 kb on + strand, within ABIE51_RS04795at 1038.787 kb on + strand, within ABIE51_RS04795

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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1,034,835 + ABIE51_RS04785 0.58 -0.1
1,034,835 + ABIE51_RS04785 0.58 -0.1
1,034,835 + ABIE51_RS04785 0.58 +0.2
1,034,835 + ABIE51_RS04785 0.58 -0.9
1,034,835 + ABIE51_RS04785 0.58 -1.1
1,034,835 + ABIE51_RS04785 0.58 -0.8
1,034,835 + ABIE51_RS04785 0.58 -0.7
1,034,835 + ABIE51_RS04785 0.58 -1.1
1,034,835 + ABIE51_RS04785 0.58 -0.5
1,034,835 + ABIE51_RS04785 0.58 -0.4
1,034,835 + ABIE51_RS04785 0.58 +0.2
1,034,836 - ABIE51_RS04785 0.58 +0.4
1,034,836 - ABIE51_RS04785 0.58 +0.1
1,034,836 - ABIE51_RS04785 0.58 -0.4
1,034,836 - ABIE51_RS04785 0.58 -0.8
1,034,836 - ABIE51_RS04785 0.58 -0.5
1,034,836 - ABIE51_RS04785 0.58 -0.4
1,034,836 - ABIE51_RS04785 0.58 -0.4
1,034,836 - ABIE51_RS04785 0.58 +0.4
1,034,836 - ABIE51_RS04785 0.58 -0.8
1,034,836 - ABIE51_RS04785 0.58 +0.9
1,034,836 - ABIE51_RS04785 0.58 -1.2
1,034,836 - ABIE51_RS04785 0.58 -0.5
1,034,961 + ABIE51_RS04785 0.71 -0.3
1,034,961 + ABIE51_RS04785 0.71 +0.3
1,034,962 - ABIE51_RS04785 0.72 -1.3
1,034,962 - ABIE51_RS04785 0.72 -0.3
1,035,018 + ABIE51_RS04785 0.78 -1.2
1,035,019 - ABIE51_RS04785 0.78 +0.1
1,035,255 - -0.6
1,035,255 - +0.3
1,035,255 - +0.2
1,035,255 - -1.3
1,035,255 - +0.5
1,035,351 + -0.1
1,035,351 + -0.3
1,035,352 - +0.1
1,035,352 - +0.4
1,035,382 + +0.6
1,035,382 + -0.3
1,035,382 + +0.5
1,035,382 + +0.5
1,035,500 + -0.2
1,038,223 + -0.3
1,038,223 + -1.6
1,038,223 + -0.1
1,038,223 + -0.3
1,038,224 + -0.5
1,038,566 + ABIE51_RS04795 0.23 +0.2
1,038,566 + ABIE51_RS04795 0.23 -0.4
1,038,566 + ABIE51_RS04795 0.23 +0.8
1,038,566 + ABIE51_RS04795 0.23 +0.5
1,038,566 + ABIE51_RS04795 0.23 -0.9
1,038,566 + ABIE51_RS04795 0.23 -0.1
1,038,567 - ABIE51_RS04795 0.23 -2.4
1,038,567 - ABIE51_RS04795 0.23 -1.2
1,038,567 - ABIE51_RS04795 0.23 -0.6
1,038,567 - ABIE51_RS04795 0.23 +0.5
1,038,567 - ABIE51_RS04795 0.23 +0.1
1,038,567 - ABIE51_RS04795 0.23 +0.4
1,038,730 + ABIE51_RS04795 0.40 -0.1
1,038,730 + ABIE51_RS04795 0.40 -3.7
1,038,787 + ABIE51_RS04795 0.45 -0.2

Or see this region's nucleotide sequence