Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04465 and ABIE51_RS04470 are separated by 121 nucleotides ABIE51_RS04470 and ABIE51_RS04475 are separated by 4 nucleotides ABIE51_RS04475 and ABIE51_RS04480 are separated by 339 nucleotides
ABIE51_RS04465: ABIE51_RS04465 - valine--tRNA ligase, at 961,223 to 964,006
_RS04465
ABIE51_RS04470: ABIE51_RS04470 - DNA polymerase III subunit chi, at 964,128 to 964,550
_RS04470
ABIE51_RS04475: ABIE51_RS04475 - leucyl aminopeptidase, at 964,555 to 966,030
_RS04475
ABIE51_RS04480: ABIE51_RS04480 - LPS export ABC transporter permease LptF, at 966,370 to 967,473
_RS04480
Position (kb) 964
965
966
967 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 963.982 kb on - strand at 964.139 kb on - strand at 964.139 kb on - strand at 964.740 kb on - strand, within ABIE51_RS04475 at 964.740 kb on - strand, within ABIE51_RS04475 at 964.776 kb on - strand, within ABIE51_RS04475 at 964.958 kb on + strand, within ABIE51_RS04475 at 964.958 kb on + strand, within ABIE51_RS04475 at 964.958 kb on + strand, within ABIE51_RS04475 at 964.958 kb on + strand, within ABIE51_RS04475 at 964.959 kb on - strand, within ABIE51_RS04475 at 964.959 kb on - strand, within ABIE51_RS04475 at 964.959 kb on - strand, within ABIE51_RS04475 at 964.959 kb on - strand, within ABIE51_RS04475 at 965.058 kb on - strand, within ABIE51_RS04475 at 965.178 kb on - strand, within ABIE51_RS04475 at 965.178 kb on - strand, within ABIE51_RS04475 at 965.178 kb on - strand, within ABIE51_RS04475 at 965.258 kb on + strand, within ABIE51_RS04475 at 965.286 kb on - strand, within ABIE51_RS04475 at 965.286 kb on - strand, within ABIE51_RS04475 at 965.452 kb on + strand, within ABIE51_RS04475 at 965.452 kb on + strand, within ABIE51_RS04475 at 965.452 kb on + strand, within ABIE51_RS04475 at 965.452 kb on + strand, within ABIE51_RS04475 at 965.452 kb on + strand, within ABIE51_RS04475 at 965.452 kb on + strand, within ABIE51_RS04475 at 965.452 kb on + strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.453 kb on - strand, within ABIE51_RS04475 at 965.605 kb on - strand, within ABIE51_RS04475 at 965.606 kb on + strand, within ABIE51_RS04475 at 965.607 kb on - strand, within ABIE51_RS04475 at 965.607 kb on - strand, within ABIE51_RS04475 at 965.612 kb on + strand, within ABIE51_RS04475 at 965.759 kb on + strand, within ABIE51_RS04475 at 965.760 kb on - strand, within ABIE51_RS04475 at 966.051 kb on - strand at 966.051 kb on - strand at 966.051 kb on - strand at 966.051 kb on - strand at 966.051 kb on - strand at 966.051 kb on - strand at 966.051 kb on - strand at 966.102 kb on - strand at 966.102 kb on - strand at 966.182 kb on + strand at 966.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 963,982 - +0.4 964,139 - -0.1 964,139 - -1.7 964,740 - ABIE51_RS04475 0.13 -5.7 964,740 - ABIE51_RS04475 0.13 -3.0 964,776 - ABIE51_RS04475 0.15 -3.5 964,958 + ABIE51_RS04475 0.27 -2.4 964,958 + ABIE51_RS04475 0.27 -3.4 964,958 + ABIE51_RS04475 0.27 -1.7 964,958 + ABIE51_RS04475 0.27 -4.9 964,959 - ABIE51_RS04475 0.27 -3.6 964,959 - ABIE51_RS04475 0.27 -2.7 964,959 - ABIE51_RS04475 0.27 -2.8 964,959 - ABIE51_RS04475 0.27 -1.5 965,058 - ABIE51_RS04475 0.34 -1.9 965,178 - ABIE51_RS04475 0.42 -3.3 965,178 - ABIE51_RS04475 0.42 -4.5 965,178 - ABIE51_RS04475 0.42 -0.1 965,258 + ABIE51_RS04475 0.48 -2.7 965,286 - ABIE51_RS04475 0.50 -2.1 965,286 - ABIE51_RS04475 0.50 -3.8 965,452 + ABIE51_RS04475 0.61 -2.7 965,452 + ABIE51_RS04475 0.61 -1.7 965,452 + ABIE51_RS04475 0.61 -3.9 965,452 + ABIE51_RS04475 0.61 -1.1 965,452 + ABIE51_RS04475 0.61 -5.0 965,452 + ABIE51_RS04475 0.61 -2.3 965,452 + ABIE51_RS04475 0.61 -1.1 965,453 - ABIE51_RS04475 0.61 -2.7 965,453 - ABIE51_RS04475 0.61 -3.0 965,453 - ABIE51_RS04475 0.61 -0.7 965,453 - ABIE51_RS04475 0.61 -2.3 965,453 - ABIE51_RS04475 0.61 -2.9 965,453 - ABIE51_RS04475 0.61 -2.0 965,453 - ABIE51_RS04475 0.61 -2.3 965,453 - ABIE51_RS04475 0.61 -2.4 965,605 - ABIE51_RS04475 0.71 -0.1 965,606 + ABIE51_RS04475 0.71 -2.7 965,607 - ABIE51_RS04475 0.71 -4.8 965,607 - ABIE51_RS04475 0.71 -4.4 965,612 + ABIE51_RS04475 0.72 -0.7 965,759 + ABIE51_RS04475 0.82 -1.1 965,760 - ABIE51_RS04475 0.82 -5.8 966,051 - -1.7 966,051 - -0.7 966,051 - -0.4 966,051 - -0.6 966,051 - -2.1 966,051 - -0.3 966,051 - -0.1 966,102 - -2.4 966,102 - -2.1 966,182 + -1.1 966,182 + -1.7
Or see this region's nucleotide sequence