Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04245 and ABIE51_RS04250 are separated by 63 nucleotides ABIE51_RS04250 and ABIE51_RS04255 are separated by 164 nucleotides
ABIE51_RS04245: ABIE51_RS04245 - fumarylacetoacetate hydrolase family protein, at 914,112 to 915,101
_RS04245
ABIE51_RS04250: ABIE51_RS04250 - maleylacetoacetate isomerase, at 915,165 to 915,830
_RS04250
ABIE51_RS04255: ABIE51_RS04255 - PilT/PilU family type 4a pilus ATPase, at 915,995 to 917,107
_RS04255
Position (kb) 915
916 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 914.268 kb on + strand, within ABIE51_RS04245 at 914.269 kb on - strand, within ABIE51_RS04245 at 914.269 kb on - strand, within ABIE51_RS04245 at 914.434 kb on - strand, within ABIE51_RS04245 at 914.434 kb on - strand, within ABIE51_RS04245 at 914.452 kb on - strand, within ABIE51_RS04245 at 914.452 kb on - strand, within ABIE51_RS04245 at 914.452 kb on - strand, within ABIE51_RS04245 at 914.476 kb on - strand, within ABIE51_RS04245 at 914.476 kb on - strand, within ABIE51_RS04245 at 914.476 kb on - strand, within ABIE51_RS04245 at 914.515 kb on - strand, within ABIE51_RS04245 at 914.515 kb on - strand, within ABIE51_RS04245 at 914.515 kb on - strand, within ABIE51_RS04245 at 914.515 kb on - strand, within ABIE51_RS04245 at 914.781 kb on - strand, within ABIE51_RS04245 at 914.781 kb on - strand, within ABIE51_RS04245 at 914.781 kb on - strand, within ABIE51_RS04245 at 915.189 kb on + strand at 915.190 kb on - strand at 915.195 kb on + strand at 915.195 kb on + strand at 915.196 kb on - strand at 915.196 kb on - strand at 915.196 kb on - strand at 915.216 kb on + strand at 915.217 kb on - strand at 915.256 kb on - strand, within ABIE51_RS04250 at 915.397 kb on - strand, within ABIE51_RS04250 at 915.575 kb on - strand, within ABIE51_RS04250 at 915.575 kb on - strand, within ABIE51_RS04250 at 915.699 kb on + strand, within ABIE51_RS04250 at 915.699 kb on + strand, within ABIE51_RS04250 at 915.699 kb on + strand, within ABIE51_RS04250 at 915.699 kb on + strand, within ABIE51_RS04250 at 915.700 kb on - strand, within ABIE51_RS04250 at 915.736 kb on - strand, within ABIE51_RS04250 at 915.828 kb on + strand at 915.828 kb on + strand at 915.829 kb on - strand at 915.829 kb on - strand at 915.832 kb on + strand at 915.832 kb on + strand at 915.832 kb on + strand at 915.832 kb on + strand at 915.832 kb on + strand at 915.832 kb on + strand at 915.833 kb on - strand at 915.833 kb on - strand at 915.833 kb on - strand at 915.903 kb on + strand at 915.903 kb on + strand at 915.904 kb on - strand at 915.904 kb on - strand at 915.904 kb on - strand at 915.904 kb on - strand at 915.904 kb on - strand at 915.904 kb on - strand at 915.904 kb on - strand at 915.904 kb on - strand at 915.996 kb on + strand at 915.996 kb on + strand at 916.014 kb on + strand at 916.026 kb on + strand at 916.618 kb on - strand, within ABIE51_RS04255 at 916.645 kb on + strand, within ABIE51_RS04255 at 916.645 kb on + strand, within ABIE51_RS04255 at 916.645 kb on + strand, within ABIE51_RS04255 at 916.645 kb on + strand, within ABIE51_RS04255 at 916.671 kb on + strand, within ABIE51_RS04255
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 914,268 + ABIE51_RS04245 0.16 -0.1 914,269 - ABIE51_RS04245 0.16 -1.1 914,269 - ABIE51_RS04245 0.16 -3.1 914,434 - ABIE51_RS04245 0.33 -2.9 914,434 - ABIE51_RS04245 0.33 -0.1 914,452 - ABIE51_RS04245 0.34 -1.7 914,452 - ABIE51_RS04245 0.34 -1.1 914,452 - ABIE51_RS04245 0.34 -1.1 914,476 - ABIE51_RS04245 0.37 -1.7 914,476 - ABIE51_RS04245 0.37 -1.1 914,476 - ABIE51_RS04245 0.37 -2.4 914,515 - ABIE51_RS04245 0.41 -2.1 914,515 - ABIE51_RS04245 0.41 -1.7 914,515 - ABIE51_RS04245 0.41 -2.1 914,515 - ABIE51_RS04245 0.41 -1.7 914,781 - ABIE51_RS04245 0.68 -1.7 914,781 - ABIE51_RS04245 0.68 -1.7 914,781 - ABIE51_RS04245 0.68 -0.1 915,189 + -2.9 915,190 - -2.7 915,195 + -3.9 915,195 + -5.4 915,196 - -3.4 915,196 - -6.0 915,196 - -2.4 915,216 + -5.1 915,217 - -5.6 915,256 - ABIE51_RS04250 0.14 -4.3 915,397 - ABIE51_RS04250 0.35 -3.8 915,575 - ABIE51_RS04250 0.62 -6.4 915,575 - ABIE51_RS04250 0.62 -3.7 915,699 + ABIE51_RS04250 0.80 -3.1 915,699 + ABIE51_RS04250 0.80 -3.4 915,699 + ABIE51_RS04250 0.80 -5.9 915,699 + ABIE51_RS04250 0.80 -6.0 915,700 - ABIE51_RS04250 0.80 -4.6 915,736 - ABIE51_RS04250 0.86 -4.7 915,828 + -1.1 915,828 + -0.1 915,829 - -0.1 915,829 - +0.4 915,832 + -0.2 915,832 + +0.1 915,832 + -0.1 915,832 + -0.1 915,832 + +0.1 915,832 + -0.1 915,833 - -0.2 915,833 - +0.2 915,833 - -0.0 915,903 + +0.3 915,903 + -0.4 915,904 - +0.5 915,904 - -0.5 915,904 - +0.2 915,904 - -0.0 915,904 - +0.1 915,904 - -0.1 915,904 - +0.1 915,904 - +0.2 915,996 + -0.3 915,996 + +0.7 916,014 + +0.1 916,026 + -0.9 916,618 - ABIE51_RS04255 0.56 -0.2 916,645 + ABIE51_RS04255 0.58 -0.5 916,645 + ABIE51_RS04255 0.58 +0.3 916,645 + ABIE51_RS04255 0.58 +0.3 916,645 + ABIE51_RS04255 0.58 -0.3 916,671 + ABIE51_RS04255 0.61 +0.1
Or see this region's nucleotide sequence