Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04065 and ABIE51_RS04070 are separated by 179 nucleotides ABIE51_RS04070 and ABIE51_RS04075 are separated by 109 nucleotides ABIE51_RS04075 and ABIE51_RS04080 are separated by 117 nucleotides ABIE51_RS04080 and ABIE51_RS04085 overlap by 4 nucleotides
ABIE51_RS04065: ABIE51_RS04065 - oligopeptide:H+ symporter, at 883,691 to 885,199
_RS04065
ABIE51_RS04070: ABIE51_RS04070 - MarR family winged helix-turn-helix transcriptional regulator, at 885,379 to 885,897
_RS04070
ABIE51_RS04075: ABIE51_RS04075 - 4-hydroxyphenylpyruvate dioxygenase, at 886,007 to 887,101
_RS04075
ABIE51_RS04080: ABIE51_RS04080 - DUF559 domain-containing protein, at 887,219 to 887,632
_RS04080
ABIE51_RS04085: ABIE51_RS04085 - homogentisate 1,2-dioxygenase, at 887,629 to 888,936
_RS04085
Position (kb) 886
887
888 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 885.107 kb on + strand at 885.380 kb on + strand at 885.380 kb on + strand at 885.381 kb on - strand at 885.521 kb on + strand, within ABIE51_RS04070 at 885.521 kb on + strand, within ABIE51_RS04070 at 885.521 kb on + strand, within ABIE51_RS04070 at 885.521 kb on + strand, within ABIE51_RS04070 at 885.521 kb on + strand, within ABIE51_RS04070 at 885.521 kb on + strand, within ABIE51_RS04070 at 885.521 kb on + strand, within ABIE51_RS04070 at 885.521 kb on + strand, within ABIE51_RS04070 at 885.522 kb on - strand, within ABIE51_RS04070 at 885.522 kb on - strand, within ABIE51_RS04070 at 885.522 kb on - strand, within ABIE51_RS04070 at 885.522 kb on - strand, within ABIE51_RS04070 at 885.530 kb on + strand, within ABIE51_RS04070 at 885.689 kb on + strand, within ABIE51_RS04070 at 885.749 kb on + strand, within ABIE51_RS04070 at 885.749 kb on + strand, within ABIE51_RS04070 at 885.934 kb on + strand at 885.935 kb on - strand at 885.991 kb on - strand at 886.127 kb on + strand, within ABIE51_RS04075 at 886.156 kb on - strand, within ABIE51_RS04075 at 886.188 kb on - strand, within ABIE51_RS04075 at 886.418 kb on + strand, within ABIE51_RS04075 at 886.454 kb on + strand, within ABIE51_RS04075 at 886.454 kb on + strand, within ABIE51_RS04075 at 886.544 kb on + strand, within ABIE51_RS04075 at 886.545 kb on - strand, within ABIE51_RS04075 at 886.545 kb on - strand, within ABIE51_RS04075 at 886.545 kb on - strand, within ABIE51_RS04075 at 886.574 kb on + strand, within ABIE51_RS04075 at 886.574 kb on + strand, within ABIE51_RS04075 at 886.577 kb on + strand, within ABIE51_RS04075 at 886.577 kb on + strand, within ABIE51_RS04075 at 886.578 kb on - strand, within ABIE51_RS04075 at 886.610 kb on + strand, within ABIE51_RS04075 at 886.610 kb on + strand, within ABIE51_RS04075 at 886.611 kb on - strand, within ABIE51_RS04075 at 886.611 kb on - strand, within ABIE51_RS04075 at 886.611 kb on - strand, within ABIE51_RS04075 at 886.727 kb on + strand, within ABIE51_RS04075 at 886.728 kb on - strand, within ABIE51_RS04075 at 886.728 kb on - strand, within ABIE51_RS04075 at 886.739 kb on + strand, within ABIE51_RS04075 at 886.739 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.847 kb on + strand, within ABIE51_RS04075 at 886.848 kb on - strand, within ABIE51_RS04075 at 886.848 kb on - strand, within ABIE51_RS04075 at 887.099 kb on + strand at 887.099 kb on + strand at 887.099 kb on + strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.150 kb on + strand at 887.150 kb on + strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.170 kb on - strand at 887.373 kb on - strand, within ABIE51_RS04080 at 887.388 kb on - strand, within ABIE51_RS04080 at 887.388 kb on - strand, within ABIE51_RS04080 at 887.413 kb on - strand, within ABIE51_RS04080 at 887.607 kb on + strand at 887.746 kb on + strand at 887.746 kb on + strand at 887.746 kb on + strand at 887.747 kb on - strand at 887.747 kb on - strand at 887.747 kb on - strand at 887.812 kb on + strand, within ABIE51_RS04085 at 887.854 kb on + strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 888.026 kb on - strand, within ABIE51_RS04085 at 888.031 kb on + strand, within ABIE51_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 885,107 + -0.2 885,380 + +0.2 885,380 + +0.1 885,381 - -0.8 885,521 + ABIE51_RS04070 0.27 +1.0 885,521 + ABIE51_RS04070 0.27 +0.2 885,521 + ABIE51_RS04070 0.27 -0.1 885,521 + ABIE51_RS04070 0.27 -0.2 885,521 + ABIE51_RS04070 0.27 +0.3 885,521 + ABIE51_RS04070 0.27 +1.2 885,521 + ABIE51_RS04070 0.27 +0.1 885,521 + ABIE51_RS04070 0.27 +0.4 885,522 - ABIE51_RS04070 0.28 -0.3 885,522 - ABIE51_RS04070 0.28 +0.2 885,522 - ABIE51_RS04070 0.28 +0.1 885,522 - ABIE51_RS04070 0.28 -0.3 885,530 + ABIE51_RS04070 0.29 +0.2 885,689 + ABIE51_RS04070 0.60 -0.1 885,749 + ABIE51_RS04070 0.71 +0.5 885,749 + ABIE51_RS04070 0.71 +0.2 885,934 + +0.2 885,935 - -3.6 885,991 - -3.4 886,127 + ABIE51_RS04075 0.11 -1.1 886,156 - ABIE51_RS04075 0.14 -4.8 886,188 - ABIE51_RS04075 0.17 -6.0 886,418 + ABIE51_RS04075 0.38 -2.1 886,454 + ABIE51_RS04075 0.41 -3.4 886,454 + ABIE51_RS04075 0.41 -5.0 886,544 + ABIE51_RS04075 0.49 -4.9 886,545 - ABIE51_RS04075 0.49 -1.1 886,545 - ABIE51_RS04075 0.49 -4.0 886,545 - ABIE51_RS04075 0.49 -3.6 886,574 + ABIE51_RS04075 0.52 -4.3 886,574 + ABIE51_RS04075 0.52 -2.4 886,577 + ABIE51_RS04075 0.52 -2.1 886,577 + ABIE51_RS04075 0.52 -2.9 886,578 - ABIE51_RS04075 0.52 -4.3 886,610 + ABIE51_RS04075 0.55 -3.6 886,610 + ABIE51_RS04075 0.55 -4.9 886,611 - ABIE51_RS04075 0.55 -4.9 886,611 - ABIE51_RS04075 0.55 -3.8 886,611 - ABIE51_RS04075 0.55 -5.5 886,727 + ABIE51_RS04075 0.66 -5.3 886,728 - ABIE51_RS04075 0.66 -5.0 886,728 - ABIE51_RS04075 0.66 -5.3 886,739 + ABIE51_RS04075 0.67 -0.1 886,739 + ABIE51_RS04075 0.67 -3.6 886,787 + ABIE51_RS04075 0.71 -4.0 886,787 + ABIE51_RS04075 0.71 -2.9 886,787 + ABIE51_RS04075 0.71 -4.9 886,788 - ABIE51_RS04075 0.71 -4.5 886,788 - ABIE51_RS04075 0.71 -4.0 886,788 - ABIE51_RS04075 0.71 -2.7 886,788 - ABIE51_RS04075 0.71 -3.8 886,847 + ABIE51_RS04075 0.77 -1.1 886,848 - ABIE51_RS04075 0.77 -5.5 886,848 - ABIE51_RS04075 0.77 -4.4 887,099 + +0.3 887,099 + +1.7 887,099 + -0.3 887,100 - -0.8 887,100 - -0.3 887,100 - -0.3 887,100 - -0.7 887,100 - -2.3 887,100 - +0.1 887,100 - -2.0 887,100 - -2.7 887,100 - -1.4 887,100 - -0.4 887,150 + -0.3 887,150 + +0.2 887,151 - -1.1 887,151 - -1.0 887,170 - -0.8 887,373 - ABIE51_RS04080 0.37 -1.0 887,388 - ABIE51_RS04080 0.41 -0.7 887,388 - ABIE51_RS04080 0.41 -0.6 887,413 - ABIE51_RS04080 0.47 -0.3 887,607 + -0.4 887,746 + -5.1 887,746 + -4.8 887,746 + -4.0 887,747 - -3.8 887,747 - -3.3 887,747 - -4.8 887,812 + ABIE51_RS04085 0.14 -5.8 887,854 + ABIE51_RS04085 0.17 -2.7 887,855 - ABIE51_RS04085 0.17 -3.7 887,855 - ABIE51_RS04085 0.17 -4.5 887,855 - ABIE51_RS04085 0.17 -4.8 888,026 - ABIE51_RS04085 0.30 -3.7 888,031 + ABIE51_RS04085 0.31 -1.1
Or see this region's nucleotide sequence