Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS03940

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS03930 and ABIE51_RS03935 are separated by 145 nucleotidesABIE51_RS03935 and ABIE51_RS03940 are separated by 64 nucleotidesABIE51_RS03940 and ABIE51_RS03945 are separated by 120 nucleotides ABIE51_RS03930: ABIE51_RS03930 - arginine deiminase-related protein, at 859,677 to 860,588 _RS03930 ABIE51_RS03935: ABIE51_RS03935 - hypothetical protein, at 860,734 to 861,078 _RS03935 ABIE51_RS03940: ABIE51_RS03940 - response regulator transcription factor, at 861,143 to 861,826 _RS03940 ABIE51_RS03945: ABIE51_RS03945 - ATP-binding protein, at 861,947 to 863,368 _RS03945 Position (kb) 861 862Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 860.256 kb on + strand, within ABIE51_RS03930at 860.256 kb on + strand, within ABIE51_RS03930at 860.256 kb on + strand, within ABIE51_RS03930at 860.257 kb on - strand, within ABIE51_RS03930at 860.257 kb on - strand, within ABIE51_RS03930at 860.358 kb on + strand, within ABIE51_RS03930at 860.358 kb on + strand, within ABIE51_RS03930at 860.358 kb on + strand, within ABIE51_RS03930at 860.358 kb on + strand, within ABIE51_RS03930at 860.358 kb on + strand, within ABIE51_RS03930at 860.358 kb on + strand, within ABIE51_RS03930at 860.359 kb on - strand, within ABIE51_RS03930at 860.359 kb on - strand, within ABIE51_RS03930at 860.359 kb on - strand, within ABIE51_RS03930at 860.359 kb on - strand, within ABIE51_RS03930at 860.359 kb on - strand, within ABIE51_RS03930at 860.359 kb on - strand, within ABIE51_RS03930at 860.951 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.011 kb on - strand, within ABIE51_RS03935at 861.057 kb on + strandat 861.058 kb on - strandat 861.058 kb on - strandat 861.058 kb on - strandat 861.058 kb on - strandat 861.058 kb on - strandat 861.115 kb on - strandat 861.254 kb on + strand, within ABIE51_RS03940at 861.254 kb on + strand, within ABIE51_RS03940at 861.254 kb on + strand, within ABIE51_RS03940at 861.254 kb on + strand, within ABIE51_RS03940at 861.254 kb on + strand, within ABIE51_RS03940at 861.254 kb on + strand, within ABIE51_RS03940at 861.254 kb on + strand, within ABIE51_RS03940at 861.255 kb on - strand, within ABIE51_RS03940at 861.255 kb on - strand, within ABIE51_RS03940at 861.255 kb on - strand, within ABIE51_RS03940at 861.255 kb on - strand, within ABIE51_RS03940at 861.255 kb on - strand, within ABIE51_RS03940at 861.255 kb on - strand, within ABIE51_RS03940at 861.270 kb on + strand, within ABIE51_RS03940at 861.434 kb on + strand, within ABIE51_RS03940at 861.434 kb on + strand, within ABIE51_RS03940at 861.434 kb on + strand, within ABIE51_RS03940at 861.435 kb on - strand, within ABIE51_RS03940at 861.435 kb on - strand, within ABIE51_RS03940at 861.435 kb on - strand, within ABIE51_RS03940at 861.599 kb on + strand, within ABIE51_RS03940at 861.599 kb on + strand, within ABIE51_RS03940at 861.605 kb on + strand, within ABIE51_RS03940at 861.605 kb on + strand, within ABIE51_RS03940at 861.605 kb on + strand, within ABIE51_RS03940at 861.605 kb on + strand, within ABIE51_RS03940at 861.605 kb on + strand, within ABIE51_RS03940at 861.606 kb on - strand, within ABIE51_RS03940at 861.606 kb on - strand, within ABIE51_RS03940at 861.621 kb on - strand, within ABIE51_RS03940at 861.621 kb on - strand, within ABIE51_RS03940at 861.677 kb on + strand, within ABIE51_RS03940at 861.677 kb on + strand, within ABIE51_RS03940at 861.677 kb on + strand, within ABIE51_RS03940at 861.678 kb on - strand, within ABIE51_RS03940at 861.678 kb on - strand, within ABIE51_RS03940at 861.678 kb on - strand, within ABIE51_RS03940at 861.824 kb on + strandat 861.824 kb on + strandat 861.824 kb on + strandat 861.824 kb on + strandat 861.824 kb on + strandat 861.824 kb on + strandat 861.824 kb on + strandat 861.824 kb on + strandat 861.825 kb on - strandat 861.825 kb on - strandat 861.825 kb on - strandat 861.825 kb on - strandat 861.902 kb on - strandat 862.130 kb on + strand, within ABIE51_RS03945at 862.130 kb on + strand, within ABIE51_RS03945at 862.130 kb on + strand, within ABIE51_RS03945at 862.130 kb on + strand, within ABIE51_RS03945at 862.130 kb on + strand, within ABIE51_RS03945at 862.131 kb on - strand, within ABIE51_RS03945at 862.131 kb on - strand, within ABIE51_RS03945at 862.131 kb on - strand, within ABIE51_RS03945at 862.179 kb on - strand, within ABIE51_RS03945at 862.223 kb on + strand, within ABIE51_RS03945at 862.223 kb on + strand, within ABIE51_RS03945at 862.224 kb on - strand, within ABIE51_RS03945at 862.224 kb on - strand, within ABIE51_RS03945at 862.224 kb on - strand, within ABIE51_RS03945at 862.393 kb on + strand, within ABIE51_RS03945at 862.393 kb on + strand, within ABIE51_RS03945at 862.394 kb on - strand, within ABIE51_RS03945at 862.394 kb on - strand, within ABIE51_RS03945at 862.445 kb on + strand, within ABIE51_RS03945at 862.445 kb on + strand, within ABIE51_RS03945at 862.445 kb on + strand, within ABIE51_RS03945at 862.445 kb on + strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.446 kb on - strand, within ABIE51_RS03945at 862.511 kb on + strand, within ABIE51_RS03945

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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860,256 + ABIE51_RS03930 0.63 -0.4
860,256 + ABIE51_RS03930 0.63 -0.3
860,256 + ABIE51_RS03930 0.63 -0.7
860,257 - ABIE51_RS03930 0.64 -2.9
860,257 - ABIE51_RS03930 0.64 +0.9
860,358 + ABIE51_RS03930 0.75 -0.1
860,358 + ABIE51_RS03930 0.75 +0.0
860,358 + ABIE51_RS03930 0.75 +0.5
860,358 + ABIE51_RS03930 0.75 +1.2
860,358 + ABIE51_RS03930 0.75 +0.1
860,358 + ABIE51_RS03930 0.75 +0.1
860,359 - ABIE51_RS03930 0.75 -1.5
860,359 - ABIE51_RS03930 0.75 +0.1
860,359 - ABIE51_RS03930 0.75 -0.6
860,359 - ABIE51_RS03930 0.75 -0.9
860,359 - ABIE51_RS03930 0.75 -0.3
860,359 - ABIE51_RS03930 0.75 +1.0
860,951 - ABIE51_RS03935 0.63 -1.1
861,011 - ABIE51_RS03935 0.80 -4.8
861,011 - ABIE51_RS03935 0.80 -1.7
861,011 - ABIE51_RS03935 0.80 -3.3
861,011 - ABIE51_RS03935 0.80 -3.1
861,011 - ABIE51_RS03935 0.80 -4.6
861,011 - ABIE51_RS03935 0.80 -1.7
861,011 - ABIE51_RS03935 0.80 -2.9
861,011 - ABIE51_RS03935 0.80 -2.7
861,011 - ABIE51_RS03935 0.80 -2.7
861,011 - ABIE51_RS03935 0.80 -1.1
861,011 - ABIE51_RS03935 0.80 -4.1
861,011 - ABIE51_RS03935 0.80 -5.5
861,011 - ABIE51_RS03935 0.80 -2.1
861,011 - ABIE51_RS03935 0.80 -2.9
861,011 - ABIE51_RS03935 0.80 -1.1
861,057 + +0.2
861,058 - +0.1
861,058 - -1.2
861,058 - -0.6
861,058 - -1.2
861,058 - -0.6
861,115 - -0.7
861,254 + ABIE51_RS03940 0.16 -1.7
861,254 + ABIE51_RS03940 0.16 -3.9
861,254 + ABIE51_RS03940 0.16 -1.7
861,254 + ABIE51_RS03940 0.16 -3.7
861,254 + ABIE51_RS03940 0.16 -1.7
861,254 + ABIE51_RS03940 0.16 -2.4
861,254 + ABIE51_RS03940 0.16 -0.1
861,255 - ABIE51_RS03940 0.16 -2.1
861,255 - ABIE51_RS03940 0.16 -2.7
861,255 - ABIE51_RS03940 0.16 -2.1
861,255 - ABIE51_RS03940 0.16 -1.1
861,255 - ABIE51_RS03940 0.16 -2.1
861,255 - ABIE51_RS03940 0.16 -2.4
861,270 + ABIE51_RS03940 0.19 -2.4
861,434 + ABIE51_RS03940 0.43 -2.4
861,434 + ABIE51_RS03940 0.43 -2.4
861,434 + ABIE51_RS03940 0.43 -2.4
861,435 - ABIE51_RS03940 0.43 -0.1
861,435 - ABIE51_RS03940 0.43 -1.7
861,435 - ABIE51_RS03940 0.43 -1.1
861,599 + ABIE51_RS03940 0.67 -1.7
861,599 + ABIE51_RS03940 0.67 -1.7
861,605 + ABIE51_RS03940 0.68 -2.1
861,605 + ABIE51_RS03940 0.68 -1.7
861,605 + ABIE51_RS03940 0.68 -4.0
861,605 + ABIE51_RS03940 0.68 -1.7
861,605 + ABIE51_RS03940 0.68 -3.8
861,606 - ABIE51_RS03940 0.68 -1.7
861,606 - ABIE51_RS03940 0.68 -1.1
861,621 - ABIE51_RS03940 0.70 -1.7
861,621 - ABIE51_RS03940 0.70 -1.7
861,677 + ABIE51_RS03940 0.78 -2.1
861,677 + ABIE51_RS03940 0.78 -1.1
861,677 + ABIE51_RS03940 0.78 -2.7
861,678 - ABIE51_RS03940 0.78 -3.9
861,678 - ABIE51_RS03940 0.78 -0.1
861,678 - ABIE51_RS03940 0.78 -2.4
861,824 + +0.3
861,824 + +0.4
861,824 + -0.3
861,824 + -0.0
861,824 + +1.2
861,824 + +0.9
861,824 + +0.3
861,824 + +0.5
861,825 - +0.3
861,825 - +0.7
861,825 - -0.1
861,825 - -0.1
861,902 - -0.5
862,130 + ABIE51_RS03945 0.13 -3.8
862,130 + ABIE51_RS03945 0.13 -4.9
862,130 + ABIE51_RS03945 0.13 -1.7
862,130 + ABIE51_RS03945 0.13 -2.4
862,130 + ABIE51_RS03945 0.13 -5.4
862,131 - ABIE51_RS03945 0.13 -2.7
862,131 - ABIE51_RS03945 0.13 -2.1
862,131 - ABIE51_RS03945 0.13 -2.1
862,179 - ABIE51_RS03945 0.16 -3.1
862,223 + ABIE51_RS03945 0.19 -5.7
862,223 + ABIE51_RS03945 0.19 -2.7
862,224 - ABIE51_RS03945 0.19 -3.3
862,224 - ABIE51_RS03945 0.19 -1.7
862,224 - ABIE51_RS03945 0.19 -3.9
862,393 + ABIE51_RS03945 0.31 -2.9
862,393 + ABIE51_RS03945 0.31 -6.3
862,394 - ABIE51_RS03945 0.31 -4.4
862,394 - ABIE51_RS03945 0.31 -6.2
862,445 + ABIE51_RS03945 0.35 -5.4
862,445 + ABIE51_RS03945 0.35 -4.4
862,445 + ABIE51_RS03945 0.35 -5.2
862,445 + ABIE51_RS03945 0.35 -4.9
862,446 - ABIE51_RS03945 0.35 -4.8
862,446 - ABIE51_RS03945 0.35 -3.6
862,446 - ABIE51_RS03945 0.35 -4.1
862,446 - ABIE51_RS03945 0.35 -3.9
862,446 - ABIE51_RS03945 0.35 -4.4
862,446 - ABIE51_RS03945 0.35 -3.3
862,446 - ABIE51_RS03945 0.35 -5.1
862,446 - ABIE51_RS03945 0.35 -2.7
862,446 - ABIE51_RS03945 0.35 -2.1
862,511 + ABIE51_RS03945 0.40 -4.0

Or see this region's nucleotide sequence