Experiment: Ying_AminoAcid20 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03795 and ABIE51_RS03800 are separated by 335 nucleotides ABIE51_RS03800 and ABIE51_RS03805 are separated by 315 nucleotides
ABIE51_RS03795: ABIE51_RS03795 - porin, at 837,983 to 838,516
_RS03795
ABIE51_RS03800: ABIE51_RS03800 - hypothetical protein, at 838,852 to 839,127
_RS03800
ABIE51_RS03805: ABIE51_RS03805 - fumarate/nitrate reduction transcriptional regulator Fnr, at 839,443 to 840,207
_RS03805
Position (kb) 838
839
840 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 838.050 kb on + strand, within ABIE51_RS03795 at 838.051 kb on - strand, within ABIE51_RS03795 at 838.051 kb on - strand, within ABIE51_RS03795 at 838.086 kb on + strand, within ABIE51_RS03795 at 838.086 kb on + strand, within ABIE51_RS03795 at 838.104 kb on + strand, within ABIE51_RS03795 at 838.104 kb on + strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.105 kb on - strand, within ABIE51_RS03795 at 838.195 kb on - strand, within ABIE51_RS03795 at 838.195 kb on - strand, within ABIE51_RS03795 at 838.243 kb on - strand, within ABIE51_RS03795 at 838.305 kb on + strand, within ABIE51_RS03795 at 838.306 kb on - strand, within ABIE51_RS03795 at 838.326 kb on + strand, within ABIE51_RS03795 at 838.327 kb on - strand, within ABIE51_RS03795 at 838.360 kb on - strand, within ABIE51_RS03795 at 838.360 kb on - strand, within ABIE51_RS03795 at 838.360 kb on - strand, within ABIE51_RS03795 at 838.380 kb on + strand, within ABIE51_RS03795 at 838.380 kb on + strand, within ABIE51_RS03795 at 838.381 kb on - strand, within ABIE51_RS03795 at 838.381 kb on - strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.398 kb on + strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.399 kb on - strand, within ABIE51_RS03795 at 838.425 kb on + strand, within ABIE51_RS03795 at 838.426 kb on - strand, within ABIE51_RS03795 at 838.722 kb on + strand at 838.722 kb on + strand at 838.723 kb on - strand at 838.753 kb on + strand at 838.753 kb on + strand at 838.754 kb on - strand at 838.754 kb on - strand at 838.754 kb on - strand at 838.865 kb on + strand at 838.865 kb on + strand at 838.865 kb on + strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.917 kb on - strand, within ABIE51_RS03800 at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.199 kb on - strand at 839.317 kb on - strand at 839.415 kb on - strand at 839.415 kb on - strand at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.630 kb on - strand, within ABIE51_RS03805 at 839.630 kb on - strand, within ABIE51_RS03805
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3 remove 838,050 + ABIE51_RS03795 0.13 +0.1 838,051 - ABIE51_RS03795 0.13 -0.1 838,051 - ABIE51_RS03795 0.13 -6.3 838,086 + ABIE51_RS03795 0.19 +0.3 838,086 + ABIE51_RS03795 0.19 -2.1 838,104 + ABIE51_RS03795 0.23 -0.1 838,104 + ABIE51_RS03795 0.23 +0.9 838,105 - ABIE51_RS03795 0.23 -0.0 838,105 - ABIE51_RS03795 0.23 +0.5 838,105 - ABIE51_RS03795 0.23 +0.3 838,105 - ABIE51_RS03795 0.23 -0.0 838,195 - ABIE51_RS03795 0.40 +1.3 838,195 - ABIE51_RS03795 0.40 +0.2 838,243 - ABIE51_RS03795 0.49 -0.3 838,305 + ABIE51_RS03795 0.60 +0.1 838,306 - ABIE51_RS03795 0.60 +0.3 838,326 + ABIE51_RS03795 0.64 -0.2 838,327 - ABIE51_RS03795 0.64 -1.4 838,360 - ABIE51_RS03795 0.71 +0.2 838,360 - ABIE51_RS03795 0.71 -0.2 838,360 - ABIE51_RS03795 0.71 -0.7 838,380 + ABIE51_RS03795 0.74 -0.2 838,380 + ABIE51_RS03795 0.74 +0.0 838,381 - ABIE51_RS03795 0.75 -0.0 838,381 - ABIE51_RS03795 0.75 +0.4 838,398 + ABIE51_RS03795 0.78 -0.5 838,398 + ABIE51_RS03795 0.78 +0.4 838,398 + ABIE51_RS03795 0.78 -0.1 838,398 + ABIE51_RS03795 0.78 -0.2 838,398 + ABIE51_RS03795 0.78 +0.3 838,398 + ABIE51_RS03795 0.78 +0.5 838,398 + ABIE51_RS03795 0.78 +1.5 838,399 - ABIE51_RS03795 0.78 -0.0 838,399 - ABIE51_RS03795 0.78 -0.1 838,399 - ABIE51_RS03795 0.78 -0.3 838,399 - ABIE51_RS03795 0.78 -0.1 838,425 + ABIE51_RS03795 0.83 +0.5 838,426 - ABIE51_RS03795 0.83 +0.2 838,722 + +1.2 838,722 + -0.3 838,723 - -0.7 838,753 + -0.3 838,753 + -0.2 838,754 - -0.4 838,754 - -1.1 838,754 - -0.5 838,865 + +0.4 838,865 + +0.2 838,865 + +0.2 838,866 - -1.0 838,866 - +0.3 838,866 - -3.4 838,866 - +0.2 838,866 - -0.2 838,866 - +0.2 838,866 - -0.1 838,917 - ABIE51_RS03800 0.24 +0.3 839,130 + -0.6 839,130 + +0.2 839,130 + +1.0 839,130 + +1.6 839,130 + +0.9 839,130 + -0.2 839,131 - +0.2 839,131 - +0.1 839,131 - +0.5 839,131 - +0.4 839,131 - +0.3 839,199 - +0.4 839,317 - -0.5 839,415 - +0.8 839,415 - -0.7 839,629 + ABIE51_RS03805 0.24 -0.9 839,629 + ABIE51_RS03805 0.24 -0.8 839,629 + ABIE51_RS03805 0.24 -0.1 839,629 + ABIE51_RS03805 0.24 -1.9 839,629 + ABIE51_RS03805 0.24 -0.4 839,630 - ABIE51_RS03805 0.24 -0.9 839,630 - ABIE51_RS03805 0.24 -1.6
Or see this region's nucleotide sequence