Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS01265

Experiment: Ying_AminoAcid20 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS01255 and ABIE51_RS01260 are separated by 59 nucleotidesABIE51_RS01260 and ABIE51_RS01265 overlap by 4 nucleotidesABIE51_RS01265 and ABIE51_RS01270 overlap by 4 nucleotidesABIE51_RS01270 and ABIE51_RS01275 are separated by 30 nucleotidesABIE51_RS01275 and ABIE51_RS01280 are separated by 108 nucleotides ABIE51_RS01255: ABIE51_RS01255 - hypothetical protein, at 270,427 to 271,362 _RS01255 ABIE51_RS01260: ABIE51_RS01260 - RDD family protein, at 271,422 to 272,099 _RS01260 ABIE51_RS01265: ABIE51_RS01265 - twin-arginine translocase subunit TatC, at 272,096 to 272,890 _RS01265 ABIE51_RS01270: ABIE51_RS01270 - Sec-independent protein translocase protein TatB, at 272,887 to 273,489 _RS01270 ABIE51_RS01275: ABIE51_RS01275 - Sec-independent protein translocase subunit TatA, at 273,520 to 273,759 _RS01275 ABIE51_RS01280: ABIE51_RS01280 - lipid-binding SYLF domain-containing protein, at 273,868 to 274,785 _RS01280 Position (kb) 272 273Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 271.104 kb on + strand, within ABIE51_RS01255at 271.105 kb on - strand, within ABIE51_RS01255at 271.219 kb on + strand, within ABIE51_RS01255at 271.219 kb on + strand, within ABIE51_RS01255at 271.219 kb on + strand, within ABIE51_RS01255at 271.220 kb on - strand, within ABIE51_RS01255at 271.220 kb on - strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.243 kb on + strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.244 kb on - strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.267 kb on + strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.268 kb on - strand, within ABIE51_RS01255at 271.270 kb on + strandat 271.270 kb on + strandat 271.270 kb on + strandat 271.270 kb on + strandat 271.270 kb on + strandat 271.271 kb on - strandat 271.271 kb on - strandat 271.271 kb on - strandat 271.271 kb on - strandat 271.360 kb on + strandat 271.360 kb on + strandat 271.360 kb on + strandat 271.360 kb on + strandat 271.360 kb on + strandat 271.361 kb on - strandat 271.361 kb on - strandat 271.361 kb on - strandat 271.600 kb on + strand, within ABIE51_RS01260at 271.600 kb on + strand, within ABIE51_RS01260at 271.600 kb on + strand, within ABIE51_RS01260at 271.600 kb on + strand, within ABIE51_RS01260at 271.601 kb on - strand, within ABIE51_RS01260at 271.601 kb on - strand, within ABIE51_RS01260at 271.601 kb on - strand, within ABIE51_RS01260at 271.601 kb on - strand, within ABIE51_RS01260at 271.601 kb on - strand, within ABIE51_RS01260at 271.945 kb on + strand, within ABIE51_RS01260at 271.946 kb on - strand, within ABIE51_RS01260at 271.946 kb on - strand, within ABIE51_RS01260at 271.946 kb on - strand, within ABIE51_RS01260at 271.946 kb on - strand, within ABIE51_RS01260at 271.946 kb on - strand, within ABIE51_RS01260at 272.068 kb on + strandat 272.175 kb on + strandat 272.176 kb on - strand, within ABIE51_RS01265at 272.176 kb on - strand, within ABIE51_RS01265at 272.391 kb on + strand, within ABIE51_RS01265at 272.391 kb on + strand, within ABIE51_RS01265at 272.391 kb on + strand, within ABIE51_RS01265at 272.392 kb on - strand, within ABIE51_RS01265at 272.392 kb on - strand, within ABIE51_RS01265at 272.496 kb on + strand, within ABIE51_RS01265at 272.496 kb on + strand, within ABIE51_RS01265at 272.496 kb on + strand, within ABIE51_RS01265at 272.497 kb on - strand, within ABIE51_RS01265at 272.497 kb on - strand, within ABIE51_RS01265at 272.553 kb on + strand, within ABIE51_RS01265at 272.553 kb on + strand, within ABIE51_RS01265at 272.553 kb on + strand, within ABIE51_RS01265at 272.553 kb on + strand, within ABIE51_RS01265at 272.554 kb on - strand, within ABIE51_RS01265at 272.554 kb on - strand, within ABIE51_RS01265at 272.554 kb on - strand, within ABIE51_RS01265at 272.554 kb on - strand, within ABIE51_RS01265at 272.554 kb on - strand, within ABIE51_RS01265at 272.554 kb on - strand, within ABIE51_RS01265at 272.586 kb on + strand, within ABIE51_RS01265at 272.587 kb on - strand, within ABIE51_RS01265at 272.727 kb on + strand, within ABIE51_RS01265at 272.727 kb on + strand, within ABIE51_RS01265at 272.728 kb on - strand, within ABIE51_RS01265at 272.728 kb on - strand, within ABIE51_RS01265at 272.728 kb on - strand, within ABIE51_RS01265at 272.728 kb on - strand, within ABIE51_RS01265at 272.728 kb on - strand, within ABIE51_RS01265at 272.728 kb on - strand, within ABIE51_RS01265at 272.728 kb on - strand, within ABIE51_RS01265at 272.868 kb on + strandat 272.868 kb on + strandat 272.868 kb on + strandat 272.868 kb on + strandat 272.868 kb on + strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.869 kb on - strandat 272.987 kb on + strand, within ABIE51_RS01270at 272.987 kb on + strand, within ABIE51_RS01270at 272.987 kb on + strand, within ABIE51_RS01270at 272.987 kb on + strand, within ABIE51_RS01270at 272.987 kb on + strand, within ABIE51_RS01270at 272.987 kb on + strand, within ABIE51_RS01270at 272.987 kb on + strand, within ABIE51_RS01270at 272.988 kb on - strand, within ABIE51_RS01270at 272.988 kb on - strand, within ABIE51_RS01270at 272.988 kb on - strand, within ABIE51_RS01270at 273.132 kb on + strand, within ABIE51_RS01270at 273.132 kb on + strand, within ABIE51_RS01270at 273.133 kb on - strand, within ABIE51_RS01270at 273.133 kb on - strand, within ABIE51_RS01270at 273.133 kb on - strand, within ABIE51_RS01270at 273.843 kb on + strandat 273.843 kb on + strandat 273.844 kb on - strandat 273.844 kb on - strandat 273.844 kb on - strandat 273.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
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271,104 + ABIE51_RS01255 0.72 +0.9
271,105 - ABIE51_RS01255 0.72 +0.5
271,219 + ABIE51_RS01255 0.85 -0.1
271,219 + ABIE51_RS01255 0.85 +0.9
271,219 + ABIE51_RS01255 0.85 -0.1
271,220 - ABIE51_RS01255 0.85 -0.4
271,220 - ABIE51_RS01255 0.85 -1.7
271,243 + ABIE51_RS01255 0.87 -0.7
271,243 + ABIE51_RS01255 0.87 -0.6
271,243 + ABIE51_RS01255 0.87 -1.4
271,243 + ABIE51_RS01255 0.87 -0.6
271,243 + ABIE51_RS01255 0.87 +1.7
271,243 + ABIE51_RS01255 0.87 +0.8
271,243 + ABIE51_RS01255 0.87 +0.9
271,243 + ABIE51_RS01255 0.87 +0.2
271,243 + ABIE51_RS01255 0.87 -0.0
271,243 + ABIE51_RS01255 0.87 +0.2
271,243 + ABIE51_RS01255 0.87 +0.9
271,243 + ABIE51_RS01255 0.87 +0.3
271,244 - ABIE51_RS01255 0.87 +0.7
271,244 - ABIE51_RS01255 0.87 +0.5
271,244 - ABIE51_RS01255 0.87 -0.7
271,244 - ABIE51_RS01255 0.87 -0.6
271,244 - ABIE51_RS01255 0.87 -0.5
271,244 - ABIE51_RS01255 0.87 +0.1
271,244 - ABIE51_RS01255 0.87 +0.3
271,244 - ABIE51_RS01255 0.87 -0.7
271,244 - ABIE51_RS01255 0.87 +1.9
271,244 - ABIE51_RS01255 0.87 +0.1
271,244 - ABIE51_RS01255 0.87 -0.6
271,244 - ABIE51_RS01255 0.87 -0.8
271,244 - ABIE51_RS01255 0.87 +1.5
271,244 - ABIE51_RS01255 0.87 -0.2
271,244 - ABIE51_RS01255 0.87 +0.6
271,244 - ABIE51_RS01255 0.87 -0.4
271,244 - ABIE51_RS01255 0.87 +0.5
271,244 - ABIE51_RS01255 0.87 -0.1
271,267 + ABIE51_RS01255 0.90 +0.2
271,267 + ABIE51_RS01255 0.90 -0.6
271,267 + ABIE51_RS01255 0.90 -0.1
271,267 + ABIE51_RS01255 0.90 -0.2
271,267 + ABIE51_RS01255 0.90 +0.1
271,267 + ABIE51_RS01255 0.90 +0.8
271,267 + ABIE51_RS01255 0.90 -0.1
271,267 + ABIE51_RS01255 0.90 +0.4
271,268 - ABIE51_RS01255 0.90 -0.1
271,268 - ABIE51_RS01255 0.90 -0.3
271,268 - ABIE51_RS01255 0.90 +0.8
271,268 - ABIE51_RS01255 0.90 -0.6
271,268 - ABIE51_RS01255 0.90 -0.3
271,268 - ABIE51_RS01255 0.90 -0.1
271,268 - ABIE51_RS01255 0.90 -0.1
271,268 - ABIE51_RS01255 0.90 +0.5
271,268 - ABIE51_RS01255 0.90 -2.1
271,268 - ABIE51_RS01255 0.90 +0.0
271,268 - ABIE51_RS01255 0.90 +0.8
271,268 - ABIE51_RS01255 0.90 +0.9
271,268 - ABIE51_RS01255 0.90 -0.5
271,270 + +0.0
271,270 + +1.9
271,270 + -0.1
271,270 + -0.1
271,270 + +0.9
271,271 - +0.5
271,271 - -0.9
271,271 - +0.3
271,271 - +0.2
271,360 + -0.2
271,360 + -0.2
271,360 + +0.9
271,360 + +0.3
271,360 + +0.5
271,361 - -0.2
271,361 - +0.1
271,361 - -1.1
271,600 + ABIE51_RS01260 0.26 +0.0
271,600 + ABIE51_RS01260 0.26 +0.1
271,600 + ABIE51_RS01260 0.26 -0.2
271,600 + ABIE51_RS01260 0.26 +0.1
271,601 - ABIE51_RS01260 0.26 +0.3
271,601 - ABIE51_RS01260 0.26 +0.5
271,601 - ABIE51_RS01260 0.26 -1.1
271,601 - ABIE51_RS01260 0.26 -0.1
271,601 - ABIE51_RS01260 0.26 +0.1
271,945 + ABIE51_RS01260 0.77 -1.7
271,946 - ABIE51_RS01260 0.77 -0.1
271,946 - ABIE51_RS01260 0.77 +0.1
271,946 - ABIE51_RS01260 0.77 +0.2
271,946 - ABIE51_RS01260 0.77 +1.0
271,946 - ABIE51_RS01260 0.77 +1.0
272,068 + +0.4
272,175 + -2.7
272,176 - ABIE51_RS01265 0.10 -1.1
272,176 - ABIE51_RS01265 0.10 -3.7
272,391 + ABIE51_RS01265 0.37 -1.7
272,391 + ABIE51_RS01265 0.37 -2.4
272,391 + ABIE51_RS01265 0.37 -3.7
272,392 - ABIE51_RS01265 0.37 -5.1
272,392 - ABIE51_RS01265 0.37 -3.6
272,496 + ABIE51_RS01265 0.50 -4.0
272,496 + ABIE51_RS01265 0.50 -2.9
272,496 + ABIE51_RS01265 0.50 -2.1
272,497 - ABIE51_RS01265 0.50 -3.9
272,497 - ABIE51_RS01265 0.50 -1.7
272,553 + ABIE51_RS01265 0.57 -2.3
272,553 + ABIE51_RS01265 0.57 -3.3
272,553 + ABIE51_RS01265 0.57 -1.7
272,553 + ABIE51_RS01265 0.57 -3.4
272,554 - ABIE51_RS01265 0.58 -2.7
272,554 - ABIE51_RS01265 0.58 -3.4
272,554 - ABIE51_RS01265 0.58 -3.7
272,554 - ABIE51_RS01265 0.58 -3.8
272,554 - ABIE51_RS01265 0.58 -4.7
272,554 - ABIE51_RS01265 0.58 -0.7
272,586 + ABIE51_RS01265 0.62 -5.8
272,587 - ABIE51_RS01265 0.62 -2.7
272,727 + ABIE51_RS01265 0.79 -2.6
272,727 + ABIE51_RS01265 0.79 -3.0
272,728 - ABIE51_RS01265 0.79 -2.9
272,728 - ABIE51_RS01265 0.79 -3.1
272,728 - ABIE51_RS01265 0.79 -2.4
272,728 - ABIE51_RS01265 0.79 -0.9
272,728 - ABIE51_RS01265 0.79 -3.7
272,728 - ABIE51_RS01265 0.79 -1.7
272,728 - ABIE51_RS01265 0.79 -1.7
272,868 + -2.7
272,868 + -2.7
272,868 + -2.9
272,868 + -1.7
272,868 + -2.7
272,869 - -3.1
272,869 - -3.6
272,869 - -3.5
272,869 - -3.9
272,869 - -4.4
272,869 - -3.4
272,869 - -2.7
272,869 - -4.5
272,987 + ABIE51_RS01270 0.17 +0.5
272,987 + ABIE51_RS01270 0.17 -0.5
272,987 + ABIE51_RS01270 0.17 +0.2
272,987 + ABIE51_RS01270 0.17 -0.7
272,987 + ABIE51_RS01270 0.17 +0.3
272,987 + ABIE51_RS01270 0.17 -0.7
272,987 + ABIE51_RS01270 0.17 +0.6
272,988 - ABIE51_RS01270 0.17 +0.5
272,988 - ABIE51_RS01270 0.17 -0.1
272,988 - ABIE51_RS01270 0.17 -0.5
273,132 + ABIE51_RS01270 0.41 -2.9
273,132 + ABIE51_RS01270 0.41 -3.1
273,133 - ABIE51_RS01270 0.41 +0.9
273,133 - ABIE51_RS01270 0.41 -1.4
273,133 - ABIE51_RS01270 0.41 -0.1
273,843 + +0.8
273,843 + -0.5
273,844 - -0.1
273,844 - +0.2
273,844 - +1.5
273,844 - -0.3

Or see this region's nucleotide sequence