Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS00265

Experiment: Ying_AminoAcid20 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE51_RS00260 and ABIE51_RS00265 are separated by 198 nucleotidesABIE51_RS00265 and ABIE51_RS00270 are separated by 197 nucleotidesABIE51_RS00270 and ABIE51_RS00275 are separated by 208 nucleotides ABIE51_RS00260: ABIE51_RS00260 - alpha/beta fold hydrolase, at 53,157 to 54,056 _RS00260 ABIE51_RS00265: ABIE51_RS00265 - 3-oxoacyl-ACP synthase III, at 54,255 to 55,277 _RS00265 ABIE51_RS00270: ABIE51_RS00270 - DUF4156 domain-containing protein, at 55,475 to 55,798 _RS00270 ABIE51_RS00275: ABIE51_RS00275 - pitrilysin family protein, at 56,007 to 58,862 _RS00275 Position (kb) 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 53.354 kb on - strand, within ABIE51_RS00260at 53.468 kb on - strand, within ABIE51_RS00260at 53.479 kb on + strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.480 kb on - strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.524 kb on + strand, within ABIE51_RS00260at 53.525 kb on - strand, within ABIE51_RS00260at 53.525 kb on - strand, within ABIE51_RS00260at 53.803 kb on + strand, within ABIE51_RS00260at 53.804 kb on - strand, within ABIE51_RS00260at 53.873 kb on - strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.908 kb on + strand, within ABIE51_RS00260at 53.909 kb on - strand, within ABIE51_RS00260at 53.909 kb on - strand, within ABIE51_RS00260at 53.909 kb on - strand, within ABIE51_RS00260at 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.977 kb on + strandat 53.978 kb on - strandat 53.978 kb on - strandat 53.978 kb on - strandat 53.978 kb on - strandat 54.029 kb on - strandat 54.110 kb on + strandat 54.110 kb on + strandat 54.111 kb on - strandat 54.257 kb on - strandat 54.257 kb on - strandat 54.257 kb on - strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.808 kb on + strand, within ABIE51_RS00265at 54.808 kb on + strand, within ABIE51_RS00265at 54.808 kb on + strand, within ABIE51_RS00265at 54.808 kb on + strand, within ABIE51_RS00265at 54.809 kb on - strand, within ABIE51_RS00265at 54.809 kb on - strand, within ABIE51_RS00265at 54.847 kb on + strand, within ABIE51_RS00265at 54.848 kb on - strand, within ABIE51_RS00265at 54.848 kb on - strand, within ABIE51_RS00265at 54.848 kb on - strand, within ABIE51_RS00265at 54.995 kb on - strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.159 kb on + strand, within ABIE51_RS00265at 55.160 kb on - strand, within ABIE51_RS00265at 55.160 kb on - strand, within ABIE51_RS00265at 55.238 kb on + strandat 55.239 kb on - strandat 55.239 kb on - strandat 55.315 kb on + strandat 55.323 kb on - strandat 55.323 kb on - strandat 55.391 kb on + strandat 55.392 kb on - strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.422 kb on + strandat 55.423 kb on - strandat 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 55.621 kb on - strand, within ABIE51_RS00270at 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.157 kb on + strandat 56.158 kb on - strandat 56.158 kb on - strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.206 kb on + strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.207 kb on - strandat 56.225 kb on - strandat 56.225 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 3
remove
53,354 - ABIE51_RS00260 0.22 -0.9
53,468 - ABIE51_RS00260 0.35 -1.8
53,479 + ABIE51_RS00260 0.36 -2.2
53,480 - ABIE51_RS00260 0.36 -1.6
53,480 - ABIE51_RS00260 0.36 -1.2
53,480 - ABIE51_RS00260 0.36 -0.7
53,480 - ABIE51_RS00260 0.36 -1.1
53,480 - ABIE51_RS00260 0.36 -2.2
53,480 - ABIE51_RS00260 0.36 -2.0
53,480 - ABIE51_RS00260 0.36 -0.5
53,524 + ABIE51_RS00260 0.41 -2.1
53,524 + ABIE51_RS00260 0.41 -1.4
53,524 + ABIE51_RS00260 0.41 -0.6
53,524 + ABIE51_RS00260 0.41 -1.0
53,525 - ABIE51_RS00260 0.41 -1.3
53,525 - ABIE51_RS00260 0.41 -1.3
53,803 + ABIE51_RS00260 0.72 -1.1
53,804 - ABIE51_RS00260 0.72 -1.2
53,873 - ABIE51_RS00260 0.80 -1.2
53,908 + ABIE51_RS00260 0.83 -1.0
53,908 + ABIE51_RS00260 0.83 -1.6
53,908 + ABIE51_RS00260 0.83 +0.9
53,908 + ABIE51_RS00260 0.83 -0.6
53,909 - ABIE51_RS00260 0.84 -1.4
53,909 - ABIE51_RS00260 0.84 -1.2
53,909 - ABIE51_RS00260 0.84 -1.3
53,977 + -1.0
53,977 + -1.1
53,977 + -1.5
53,977 + -2.7
53,977 + +0.2
53,977 + -1.1
53,977 + -2.1
53,978 - -1.3
53,978 - -3.6
53,978 - -0.7
53,978 - -1.3
54,029 - -1.5
54,110 + +0.9
54,110 + -0.1
54,111 - +0.3
54,257 - -0.2
54,257 - -0.4
54,257 - +0.9
54,284 + -1.6
54,284 + -1.1
54,284 + -3.1
54,284 + -3.0
54,285 - -1.1
54,285 - -2.9
54,285 - +0.4
54,808 + ABIE51_RS00265 0.54 -2.3
54,808 + ABIE51_RS00265 0.54 -3.9
54,808 + ABIE51_RS00265 0.54 -2.5
54,808 + ABIE51_RS00265 0.54 -3.0
54,809 - ABIE51_RS00265 0.54 -2.0
54,809 - ABIE51_RS00265 0.54 -1.8
54,847 + ABIE51_RS00265 0.58 -3.9
54,848 - ABIE51_RS00265 0.58 -2.1
54,848 - ABIE51_RS00265 0.58 -2.1
54,848 - ABIE51_RS00265 0.58 -0.5
54,995 - ABIE51_RS00265 0.72 -1.4
55,159 + ABIE51_RS00265 0.88 -1.9
55,159 + ABIE51_RS00265 0.88 -2.1
55,159 + ABIE51_RS00265 0.88 -2.3
55,159 + ABIE51_RS00265 0.88 -0.6
55,159 + ABIE51_RS00265 0.88 -2.5
55,159 + ABIE51_RS00265 0.88 -3.2
55,159 + ABIE51_RS00265 0.88 -1.8
55,159 + ABIE51_RS00265 0.88 -1.2
55,159 + ABIE51_RS00265 0.88 -1.8
55,159 + ABIE51_RS00265 0.88 -1.9
55,159 + ABIE51_RS00265 0.88 -2.8
55,159 + ABIE51_RS00265 0.88 -4.0
55,160 - ABIE51_RS00265 0.88 -3.4
55,160 - ABIE51_RS00265 0.88 -2.2
55,238 + -1.9
55,239 - -2.4
55,239 - -1.9
55,315 + +0.6
55,323 - +0.1
55,323 - -1.2
55,391 + -0.7
55,392 - +0.2
55,422 + -1.1
55,422 + -1.1
55,422 + -0.8
55,422 + +0.1
55,422 + -0.0
55,423 - -0.2
55,621 - ABIE51_RS00270 0.45 -0.1
55,621 - ABIE51_RS00270 0.45 -1.1
55,621 - ABIE51_RS00270 0.45 -1.2
55,621 - ABIE51_RS00270 0.45 -1.1
55,621 - ABIE51_RS00270 0.45 -0.4
56,157 + -0.2
56,157 + -0.3
56,157 + -0.2
56,157 + -0.6
56,157 + +0.3
56,157 + +1.0
56,157 + -0.1
56,157 + +0.3
56,157 + +0.9
56,157 + +0.2
56,158 - -0.1
56,158 - -0.3
56,206 + +0.3
56,206 + -0.1
56,206 + -0.0
56,206 + +0.1
56,206 + -0.9
56,206 + +0.2
56,206 + +0.9
56,206 + +0.6
56,206 + +0.3
56,206 + -0.1
56,206 + -0.6
56,207 - +0.7
56,207 - +0.2
56,207 - +0.2
56,207 - +0.6
56,207 - -0.1
56,207 - +0.2
56,207 - +0.4
56,225 - +0.3
56,225 - +0.8

Or see this region's nucleotide sequence