Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16555

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,598,109	-		ABIE51_RS16550	0.17	+2.5
3,598,109	-		ABIE51_RS16550	0.17	-1.2
3,598,125	-		ABIE51_RS16550	0.20	-0.4
3,598,137	-		ABIE51_RS16550	0.21	+0.0
3,598,137	-		ABIE51_RS16550	0.21	+0.9
3,598,137	-		ABIE51_RS16550	0.21	+1.4
3,598,343	+		ABIE51_RS16550	0.49	-0.5
3,598,343	+		ABIE51_RS16550	0.49	+0.7
3,598,412	+		ABIE51_RS16550	0.59	+1.6
3,598,412	+		ABIE51_RS16550	0.59	+0.4
3,598,412	+		ABIE51_RS16550	0.59	-0.4
3,598,412	+		ABIE51_RS16550	0.59	+0.3
3,598,413	-		ABIE51_RS16550	0.59	+0.1
3,598,413	-		ABIE51_RS16550	0.59	+0.5
3,598,413	-		ABIE51_RS16550	0.59	-0.8
3,598,413	-		ABIE51_RS16550	0.59	-0.5
3,598,541	+		ABIE51_RS16550	0.76	+1.0
3,598,542	-		ABIE51_RS16550	0.76	-0.4
3,598,542	-		ABIE51_RS16550	0.76	+0.8
3,598,542	-		ABIE51_RS16550	0.76	-1.3
3,598,694	+				+0.9
3,598,694	+				+0.5
3,598,695	-				-0.2
3,598,695	-				-0.5
3,598,752	+				+0.3
3,598,752	+				+0.0
3,598,752	+				-0.1
3,598,752	+				+0.9
3,598,752	+				+0.0
3,598,752	+				+0.0
3,598,752	+				-0.1
3,598,752	+				+0.4
3,598,752	+				+0.5
3,598,753	-				-2.5
3,598,753	-				-2.1
3,598,753	-				-1.7
3,598,753	-				-2.9
3,598,753	-				-3.0
3,598,753	-				-2.7
3,599,205	+		ABIE51_RS16555	0.20	-3.1
3,599,205	+		ABIE51_RS16555	0.20	-5.2
3,599,205	+		ABIE51_RS16555	0.20	-3.9
3,599,205	+		ABIE51_RS16555	0.20	-4.5
3,599,205	+		ABIE51_RS16555	0.20	-2.4
3,599,206	-		ABIE51_RS16555	0.20	-4.8
3,599,206	-		ABIE51_RS16555	0.20	-3.1
3,599,206	-		ABIE51_RS16555	0.20	-1.1
3,599,206	-		ABIE51_RS16555	0.20	-5.7
3,599,454	+		ABIE51_RS16555	0.34	-4.1
3,599,455	-		ABIE51_RS16555	0.34	-4.4
3,599,532	+		ABIE51_RS16555	0.38	-4.4
3,599,532	+		ABIE51_RS16555	0.38	-4.2
3,599,548	-		ABIE51_RS16555	0.39	-6.8
3,599,548	-		ABIE51_RS16555	0.39	-7.0
3,599,568	+		ABIE51_RS16555	0.40	-3.9
3,599,568	+		ABIE51_RS16555	0.40	-3.2
3,599,568	+		ABIE51_RS16555	0.40	-0.1
3,599,568	+		ABIE51_RS16555	0.40	-1.1
3,599,569	-		ABIE51_RS16555	0.40	-4.5
3,599,569	-		ABIE51_RS16555	0.40	-6.7
3,599,569	-		ABIE51_RS16555	0.40	-5.2
3,599,576	+		ABIE51_RS16555	0.40	-5.3
3,599,576	+		ABIE51_RS16555	0.40	-5.9
3,599,577	-		ABIE51_RS16555	0.40	-1.1
3,599,577	-		ABIE51_RS16555	0.40	-5.2
3,599,577	-		ABIE51_RS16555	0.40	-4.4
3,599,577	-		ABIE51_RS16555	0.40	-5.7
3,599,577	-		ABIE51_RS16555	0.40	-5.0
3,599,577	-		ABIE51_RS16555	0.40	-4.4
3,600,044	+		ABIE51_RS16555	0.66	-2.9
3,600,234	+		ABIE51_RS16555	0.76	-4.1
3,600,235	-		ABIE51_RS16555	0.76	-4.5
3,600,588	+				-4.5
3,600,589	-				-4.2
3,600,636	+				-4.8
3,600,636	+				-3.4
3,600,637	-				-4.4
3,600,637	-				-2.1
3,600,637	-				-4.9
3,600,637	-				-3.9
3,600,637	-				-1.6
3,600,637	-				-6.9
3,600,637	-				-6.8
3,600,637	-				-3.8
3,600,672	+				-0.1
3,600,673	-				+0.1
3,600,673	-				+0.5
3,600,673	-				-0.1
3,600,695	+				-0.1
3,600,762	+				+0.3
3,600,762	+				-0.6
3,600,763	-				+0.3
3,600,763	-				-0.1
3,600,763	-				-0.1
3,600,763	-				-0.2
3,600,775	+				-0.3
3,600,775	+				+0.8
3,600,775	+				+0.3
3,600,776	-				+0.3
3,600,776	-				+0.4
3,600,776	-				-0.0
3,601,265	-				-0.2
3,601,316	+				-0.2
3,601,341	+				+0.6
3,601,607	+		ABIE51_RS16565	0.61	+0.2
3,601,607	+		ABIE51_RS16565	0.61	-0.4
3,601,607	+		ABIE51_RS16565	0.61	+0.1
3,601,607	+		ABIE51_RS16565	0.61	+0.6
3,601,607	+		ABIE51_RS16565	0.61	+0.1
3,601,608	-		ABIE51_RS16565	0.61	+0.0
3,601,608	-		ABIE51_RS16565	0.61	-0.9
3,601,608	-		ABIE51_RS16565	0.61	-0.3