Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS15440

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,348,567	+		ABIE51_RS15435	0.26	-6.2
3,348,568	-		ABIE51_RS15435	0.26	-4.4
3,348,571	-		ABIE51_RS15435	0.27	-3.8
3,348,579	+		ABIE51_RS15435	0.27	-2.7
3,348,580	-		ABIE51_RS15435	0.27	-4.7
3,348,580	-		ABIE51_RS15435	0.27	-1.9
3,348,580	-		ABIE51_RS15435	0.27	-2.4
3,348,583	-		ABIE51_RS15435	0.28	-3.7
3,348,738	+		ABIE51_RS15435	0.40	-3.5
3,348,738	+		ABIE51_RS15435	0.40	-2.9
3,348,738	+		ABIE51_RS15435	0.40	-4.0
3,348,739	-		ABIE51_RS15435	0.40	-2.4
3,348,739	-		ABIE51_RS15435	0.40	-0.1
3,348,741	+		ABIE51_RS15435	0.40	-2.4
3,348,741	+		ABIE51_RS15435	0.40	-2.4
3,349,060	-		ABIE51_RS15435	0.65	-2.5
3,349,060	-		ABIE51_RS15435	0.65	-3.3
3,349,060	-		ABIE51_RS15435	0.65	-2.7
3,349,093	-		ABIE51_RS15435	0.68	-2.4
3,349,093	-		ABIE51_RS15435	0.68	-3.3
3,349,146	+		ABIE51_RS15435	0.72	-4.4
3,349,146	+		ABIE51_RS15435	0.72	-1.7
3,349,146	+		ABIE51_RS15435	0.72	-3.8
3,349,146	+		ABIE51_RS15435	0.72	-3.3
3,349,146	+		ABIE51_RS15435	0.72	-2.1
3,349,147	-		ABIE51_RS15435	0.72	-4.6
3,349,147	-		ABIE51_RS15435	0.72	-4.2
3,349,147	-		ABIE51_RS15435	0.72	-2.4
3,349,147	-		ABIE51_RS15435	0.72	-3.4
3,349,147	-		ABIE51_RS15435	0.72	-2.4
3,349,147	-		ABIE51_RS15435	0.72	-2.5
3,349,173	+		ABIE51_RS15435	0.74	-3.7
3,349,173	+		ABIE51_RS15435	0.74	-4.7
3,349,174	-		ABIE51_RS15435	0.74	-4.1
3,349,215	+		ABIE51_RS15435	0.78	-5.4
3,349,216	-		ABIE51_RS15435	0.78	-2.4
3,349,254	+		ABIE51_RS15435	0.81	-3.3
3,349,254	+		ABIE51_RS15435	0.81	-3.4
3,349,254	+		ABIE51_RS15435	0.81	-3.4
3,349,254	+		ABIE51_RS15435	0.81	-2.7
3,349,255	-		ABIE51_RS15435	0.81	-4.3
3,349,362	+		ABIE51_RS15435	0.89	-2.3
3,349,363	-		ABIE51_RS15435	0.89	-4.5
3,349,366	-		ABIE51_RS15435	0.90	-4.1
3,349,366	-		ABIE51_RS15435	0.90	-3.6
3,349,392	+				-3.4
3,349,392	+				-2.4
3,349,392	+				-2.9
3,349,393	-				-2.7
3,349,500	+				-4.5
3,349,501	-				-1.1
3,349,563	+		ABIE51_RS15440	0.10	-3.5
3,349,564	-		ABIE51_RS15440	0.10	-3.9
3,349,564	-		ABIE51_RS15440	0.10	-4.3
3,349,659	+		ABIE51_RS15440	0.26	-4.2
3,349,794	+		ABIE51_RS15440	0.47	-4.3
3,349,795	-		ABIE51_RS15440	0.47	-3.4
3,349,795	-		ABIE51_RS15440	0.47	-1.1
3,350,151	+				-3.3
3,350,209	-				+0.1
3,350,377	+				-0.8
3,350,377	+				-0.5
3,350,377	+				-0.5
3,350,377	+				-0.5
3,350,377	+				-0.7
3,350,377	+				-0.7
3,350,377	+				-0.2
3,350,377	+				-1.7
3,350,377	+				-0.7
3,350,378	-				-0.3
3,350,378	-				-1.1
3,350,378	-				-0.3
3,350,378	-				-2.1
3,350,378	-				-0.0
3,350,378	-				-1.0
3,350,378	-				-0.7
3,350,395	+				-0.1
3,350,414	-		ABIE51_RS15445	0.10	-0.6
3,350,414	-		ABIE51_RS15445	0.10	-0.4
3,350,414	-		ABIE51_RS15445	0.10	-0.1
3,350,500	+		ABIE51_RS15445	0.19	-0.5
3,350,500	+		ABIE51_RS15445	0.19	-0.7
3,350,501	-		ABIE51_RS15445	0.19	-0.2
3,350,770	+		ABIE51_RS15445	0.48	-0.4
3,350,770	+		ABIE51_RS15445	0.48	-1.3
3,350,770	+		ABIE51_RS15445	0.48	-0.1
3,350,771	-		ABIE51_RS15445	0.48	-0.6
3,350,771	-		ABIE51_RS15445	0.48	-0.4
3,350,785	+		ABIE51_RS15445	0.49	+0.1
3,350,785	+		ABIE51_RS15445	0.49	+0.1
3,350,785	+		ABIE51_RS15445	0.49	-0.3
3,350,786	-		ABIE51_RS15445	0.49	-1.7
3,350,786	-		ABIE51_RS15445	0.49	-1.3
3,350,791	+		ABIE51_RS15445	0.50	-0.7
3,350,792	-		ABIE51_RS15445	0.50	+1.0
3,350,792	-		ABIE51_RS15445	0.50	-0.4
3,350,792	-		ABIE51_RS15445	0.50	-0.8
3,350,848	+		ABIE51_RS15445	0.56	-1.0
3,350,848	+		ABIE51_RS15445	0.56	-0.6
3,350,849	-		ABIE51_RS15445	0.56	-0.5
3,350,849	-		ABIE51_RS15445	0.56	-0.7
3,350,849	-		ABIE51_RS15445	0.56	-0.6
3,350,872	+		ABIE51_RS15445	0.58	-0.4
3,350,873	-		ABIE51_RS15445	0.58	+0.1
3,350,873	-		ABIE51_RS15445	0.58	-0.0
3,350,873	-		ABIE51_RS15445	0.58	-0.7
3,350,873	-		ABIE51_RS15445	0.58	-0.7
3,350,873	-		ABIE51_RS15445	0.58	-0.3
3,350,873	-		ABIE51_RS15445	0.58	-0.4
3,350,878	+		ABIE51_RS15445	0.59	-0.6
3,350,878	+		ABIE51_RS15445	0.59	-0.3
3,350,878	+		ABIE51_RS15445	0.59	-0.4
3,350,878	+		ABIE51_RS15445	0.59	-0.8
3,350,878	+		ABIE51_RS15445	0.59	-0.8
3,350,879	-		ABIE51_RS15445	0.59	-0.4
3,350,879	-		ABIE51_RS15445	0.59	-0.2
3,350,879	-		ABIE51_RS15445	0.59	+0.1
3,350,911	+		ABIE51_RS15445	0.62	-0.5
3,350,912	-		ABIE51_RS15445	0.62	-0.6
3,350,912	-		ABIE51_RS15445	0.62	-1.5
3,350,912	-		ABIE51_RS15445	0.62	-1.0