Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS14345

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,100,777	+		ABIE51_RS14340	0.58	+0.7
3,100,777	+		ABIE51_RS14340	0.58	+0.6
3,100,778	-		ABIE51_RS14340	0.58	+0.2
3,100,778	-		ABIE51_RS14340	0.58	-0.2
3,100,792	+		ABIE51_RS14340	0.60	+0.0
3,100,792	+		ABIE51_RS14340	0.60	+0.1
3,100,792	+		ABIE51_RS14340	0.60	-0.2
3,100,793	-		ABIE51_RS14340	0.60	-1.9
3,100,862	-		ABIE51_RS14340	0.68	+0.0
3,101,287	-				-1.7
3,101,759	+				-2.1
3,101,760	-				-1.1
3,101,760	-				-1.1
3,101,760	-				-1.1
3,101,763	-				-2.7
3,102,016	-		ABIE51_RS14345	0.18	-1.7
3,102,173	+		ABIE51_RS14345	0.24	-3.7
3,102,173	+		ABIE51_RS14345	0.24	-1.7
3,102,174	-		ABIE51_RS14345	0.24	-1.1
3,102,174	-		ABIE51_RS14345	0.24	-3.9
3,102,365	+		ABIE51_RS14345	0.30	-3.7
3,102,366	-		ABIE51_RS14345	0.30	-3.3
3,102,366	-		ABIE51_RS14345	0.30	-4.0
3,102,530	+		ABIE51_RS14345	0.36	-1.1
3,102,539	+		ABIE51_RS14345	0.36	-3.1
3,102,938	+		ABIE51_RS14345	0.50	-0.1
3,102,938	+		ABIE51_RS14345	0.50	-1.1
3,103,100	+		ABIE51_RS14345	0.56	-2.4
3,103,223	+		ABIE51_RS14345	0.60	-2.4
3,103,223	+		ABIE51_RS14345	0.60	-2.4
3,103,392	-		ABIE51_RS14345	0.66	-2.4
3,103,502	+		ABIE51_RS14345	0.70	-0.1
3,103,502	+		ABIE51_RS14345	0.70	-4.6
3,103,502	+		ABIE51_RS14345	0.70	-1.1
3,103,503	-		ABIE51_RS14345	0.70	-2.7
3,103,784	+		ABIE51_RS14345	0.79	-2.4
3,103,850	+		ABIE51_RS14345	0.82	-3.9
3,103,851	-		ABIE51_RS14345	0.82	-2.7
3,103,851	-		ABIE51_RS14345	0.82	-1.9
3,103,851	-		ABIE51_RS14345	0.82	-3.6
3,103,890	-		ABIE51_RS14345	0.83	-1.1
3,104,276	+				-3.0
3,104,276	+				-3.8
3,104,310	-				-0.1
3,104,310	-				-2.1
3,104,354	+				-1.2
3,104,355	-				+0.2
3,104,355	-				+0.4
3,104,378	+				+0.6
3,104,565	+				+0.5
3,104,848	-				+0.6
3,105,084	-				+0.6
3,105,240	+		ABIE51_RS14350	0.18	+0.4
3,105,240	+		ABIE51_RS14350	0.18	+0.1
3,105,285	+		ABIE51_RS14350	0.24	+0.3
3,105,295	+		ABIE51_RS14350	0.25	-0.0