Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS08870

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS08865 and ABIE51_RS08870 are separated by 357 nucleotidesABIE51_RS08870 and ABIE51_RS08875 are separated by 3 nucleotides ABIE51_RS08865: ABIE51_RS08865 - glucokinase, at 1,886,624 to 1,887,613 _RS08865 ABIE51_RS08870: ABIE51_RS08870 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 1,887,971 to 1,889,071 _RS08870 ABIE51_RS08875: ABIE51_RS08875 - mechanosensitive ion channel domain-containing protein, at 1,889,075 to 1,890,241 _RS08875 Position (kb) 1887 1888 1889 1890Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1887.123 kb on + strand, within ABIE51_RS08865at 1887.124 kb on - strand, within ABIE51_RS08865at 1887.124 kb on - strand, within ABIE51_RS08865at 1887.444 kb on + strand, within ABIE51_RS08865at 1887.444 kb on + strand, within ABIE51_RS08865at 1887.444 kb on + strand, within ABIE51_RS08865at 1887.445 kb on - strand, within ABIE51_RS08865at 1887.445 kb on - strand, within ABIE51_RS08865at 1887.445 kb on - strand, within ABIE51_RS08865at 1887.445 kb on - strand, within ABIE51_RS08865at 1887.633 kb on - strandat 1887.654 kb on + strandat 1887.654 kb on + strandat 1887.654 kb on + strandat 1887.654 kb on + strandat 1887.691 kb on - strandat 1887.883 kb on - strandat 1888.007 kb on + strandat 1888.008 kb on - strandat 1888.223 kb on + strand, within ABIE51_RS08870at 1888.224 kb on - strand, within ABIE51_RS08870at 1888.224 kb on - strand, within ABIE51_RS08870at 1888.232 kb on + strand, within ABIE51_RS08870at 1888.232 kb on + strand, within ABIE51_RS08870at 1888.538 kb on + strand, within ABIE51_RS08870at 1888.538 kb on + strand, within ABIE51_RS08870at 1888.538 kb on + strand, within ABIE51_RS08870at 1888.539 kb on - strand, within ABIE51_RS08870at 1888.637 kb on + strand, within ABIE51_RS08870at 1888.637 kb on + strand, within ABIE51_RS08870at 1888.638 kb on - strand, within ABIE51_RS08870at 1888.638 kb on - strand, within ABIE51_RS08870at 1888.638 kb on - strand, within ABIE51_RS08870at 1889.003 kb on + strandat 1889.003 kb on + strandat 1889.003 kb on + strandat 1889.003 kb on + strandat 1889.003 kb on + strandat 1889.003 kb on + strandat 1889.004 kb on - strandat 1889.004 kb on - strandat 1889.004 kb on - strandat 1889.033 kb on + strandat 1889.033 kb on + strandat 1889.033 kb on + strandat 1889.033 kb on + strandat 1889.033 kb on + strandat 1889.034 kb on - strandat 1889.034 kb on - strandat 1889.034 kb on - strandat 1889.034 kb on - strandat 1889.034 kb on - strandat 1889.034 kb on - strandat 1889.069 kb on + strandat 1889.069 kb on + strandat 1889.070 kb on - strandat 1889.070 kb on - strandat 1889.432 kb on + strand, within ABIE51_RS08875at 1889.432 kb on + strand, within ABIE51_RS08875at 1889.432 kb on + strand, within ABIE51_RS08875at 1889.433 kb on - strand, within ABIE51_RS08875at 1889.433 kb on - strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.583 kb on + strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875at 1889.584 kb on - strand, within ABIE51_RS08875

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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1,887,123 + ABIE51_RS08865 0.50 +0.2
1,887,124 - ABIE51_RS08865 0.51 +1.0
1,887,124 - ABIE51_RS08865 0.51 +0.6
1,887,444 + ABIE51_RS08865 0.83 +0.5
1,887,444 + ABIE51_RS08865 0.83 -0.0
1,887,444 + ABIE51_RS08865 0.83 +0.7
1,887,445 - ABIE51_RS08865 0.83 +0.6
1,887,445 - ABIE51_RS08865 0.83 +1.8
1,887,445 - ABIE51_RS08865 0.83 +2.2
1,887,445 - ABIE51_RS08865 0.83 +1.0
1,887,633 - -1.0
1,887,654 + +0.1
1,887,654 + +0.8
1,887,654 + +0.5
1,887,654 + +0.3
1,887,691 - -0.2
1,887,883 - -1.3
1,888,007 + -1.8
1,888,008 - -3.3
1,888,223 + ABIE51_RS08870 0.23 -2.6
1,888,224 - ABIE51_RS08870 0.23 -1.4
1,888,224 - ABIE51_RS08870 0.23 -2.3
1,888,232 + ABIE51_RS08870 0.24 -2.2
1,888,232 + ABIE51_RS08870 0.24 -2.0
1,888,538 + ABIE51_RS08870 0.51 -1.9
1,888,538 + ABIE51_RS08870 0.51 -4.2
1,888,538 + ABIE51_RS08870 0.51 -1.8
1,888,539 - ABIE51_RS08870 0.52 -2.1
1,888,637 + ABIE51_RS08870 0.60 -2.2
1,888,637 + ABIE51_RS08870 0.60 -1.2
1,888,638 - ABIE51_RS08870 0.61 -3.0
1,888,638 - ABIE51_RS08870 0.61 -3.1
1,888,638 - ABIE51_RS08870 0.61 -2.5
1,889,003 + -1.7
1,889,003 + -1.9
1,889,003 + -2.0
1,889,003 + -1.6
1,889,003 + -2.5
1,889,003 + -1.4
1,889,004 - -1.0
1,889,004 - -2.8
1,889,004 - -2.1
1,889,033 + -1.4
1,889,033 + -3.0
1,889,033 + -1.8
1,889,033 + -2.8
1,889,033 + -1.8
1,889,034 - -1.8
1,889,034 - -3.8
1,889,034 - -2.6
1,889,034 - -2.4
1,889,034 - -3.4
1,889,034 - -0.5
1,889,069 + +0.5
1,889,069 + +0.5
1,889,070 - -0.8
1,889,070 - -0.2
1,889,432 + ABIE51_RS08875 0.31 -0.5
1,889,432 + ABIE51_RS08875 0.31 +0.7
1,889,432 + ABIE51_RS08875 0.31 +0.3
1,889,433 - ABIE51_RS08875 0.31 -0.1
1,889,433 - ABIE51_RS08875 0.31 +1.0
1,889,583 + ABIE51_RS08875 0.44 -0.2
1,889,583 + ABIE51_RS08875 0.44 +0.2
1,889,583 + ABIE51_RS08875 0.44 +0.3
1,889,583 + ABIE51_RS08875 0.44 +1.2
1,889,583 + ABIE51_RS08875 0.44 +1.2
1,889,583 + ABIE51_RS08875 0.44 +0.5
1,889,583 + ABIE51_RS08875 0.44 +0.4
1,889,583 + ABIE51_RS08875 0.44 +0.4
1,889,583 + ABIE51_RS08875 0.44 +0.1
1,889,583 + ABIE51_RS08875 0.44 +1.2
1,889,583 + ABIE51_RS08875 0.44 +1.0
1,889,583 + ABIE51_RS08875 0.44 +0.2
1,889,584 - ABIE51_RS08875 0.44 +0.4
1,889,584 - ABIE51_RS08875 0.44 -0.3
1,889,584 - ABIE51_RS08875 0.44 +0.9
1,889,584 - ABIE51_RS08875 0.44 +0.1
1,889,584 - ABIE51_RS08875 0.44 +0.3
1,889,584 - ABIE51_RS08875 0.44 +0.0
1,889,584 - ABIE51_RS08875 0.44 +0.3
1,889,584 - ABIE51_RS08875 0.44 -0.4
1,889,584 - ABIE51_RS08875 0.44 +1.3

Or see this region's nucleotide sequence