Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04530 and ABIE51_RS04535 are separated by 368 nucleotides ABIE51_RS04535 and ABIE51_RS04540 are separated by 19 nucleotides ABIE51_RS04540 and ABIE51_RS04545 overlap by 4 nucleotides ABIE51_RS04545 and ABIE51_RS04550 overlap by 4 nucleotides
ABIE51_RS04530: ABIE51_RS04530 - type II secretion system F family protein, at 981,115 to 982,332
_RS04530
ABIE51_RS04535: ABIE51_RS04535 - type II secretion system major pseudopilin GspG, at 982,701 to 983,135
_RS04535
ABIE51_RS04540: ABIE51_RS04540 - GspH/FimT family pseudopilin, at 983,155 to 983,607
_RS04540
ABIE51_RS04545: ABIE51_RS04545 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 983,604 to 984,122
_RS04545
ABIE51_RS04550: ABIE51_RS04550 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 984,119 to 984,790
_RS04550
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 981.712 kb on + strand, within ABIE51_RS04530 at 982.106 kb on - strand, within ABIE51_RS04530 at 982.306 kb on + strand at 982.306 kb on + strand at 982.535 kb on + strand at 982.535 kb on + strand at 982.536 kb on - strand at 982.851 kb on + strand, within ABIE51_RS04535 at 982.851 kb on + strand, within ABIE51_RS04535 at 982.851 kb on + strand, within ABIE51_RS04535 at 982.852 kb on - strand, within ABIE51_RS04535 at 982.852 kb on - strand, within ABIE51_RS04535 at 982.987 kb on - strand, within ABIE51_RS04535 at 983.128 kb on - strand at 983.128 kb on - strand at 983.134 kb on - strand at 983.134 kb on - strand at 983.503 kb on - strand, within ABIE51_RS04540 at 983.722 kb on - strand, within ABIE51_RS04545 at 983.847 kb on + strand, within ABIE51_RS04545 at 983.848 kb on - strand, within ABIE51_RS04545 at 983.848 kb on - strand, within ABIE51_RS04545
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 981,712 + ABIE51_RS04530 0.49 -1.2 982,106 - ABIE51_RS04530 0.81 -1.4 982,306 + -0.0 982,306 + -2.0 982,535 + -0.7 982,535 + +0.2 982,536 - -0.0 982,851 + ABIE51_RS04535 0.34 -1.7 982,851 + ABIE51_RS04535 0.34 -2.7 982,851 + ABIE51_RS04535 0.34 -2.4 982,852 - ABIE51_RS04535 0.35 -1.5 982,852 - ABIE51_RS04535 0.35 -2.0 982,987 - ABIE51_RS04535 0.66 -2.8 983,128 - -0.2 983,128 - -0.0 983,134 - +0.2 983,134 - -1.2 983,503 - ABIE51_RS04540 0.77 -1.0 983,722 - ABIE51_RS04545 0.23 -0.5 983,847 + ABIE51_RS04545 0.47 -2.3 983,848 - ABIE51_RS04545 0.47 -0.6 983,848 - ABIE51_RS04545 0.47 -1.7
Or see this region's nucleotide sequence