Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS04310

Experiment: Ying_AminoAcid20 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS04305 and ABIE51_RS04310 overlap by 4 nucleotidesABIE51_RS04310 and ABIE51_RS04315 overlap by 4 nucleotides ABIE51_RS04305: ABIE51_RS04305 - ABC transporter ATP-binding protein, at 925,994 to 927,358 _RS04305 ABIE51_RS04310: ABIE51_RS04310 - glycosyltransferase, at 927,355 to 931,488 _RS04310 ABIE51_RS04315: ABIE51_RS04315 - SIS domain-containing protein, at 931,485 to 933,089 _RS04315 Position (kb) 927 928 929 930 931 932Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 927.351 kb on + strandat 927.351 kb on + strandat 927.354 kb on + strandat 927.354 kb on + strandat 927.354 kb on + strandat 927.354 kb on + strandat 927.354 kb on + strandat 927.354 kb on + strandat 927.354 kb on + strandat 927.355 kb on - strandat 927.391 kb on + strandat 927.395 kb on + strandat 927.395 kb on + strandat 927.395 kb on + strandat 927.396 kb on - strandat 929.089 kb on + strand, within ABIE51_RS04310at 930.767 kb on + strand, within ABIE51_RS04310at 930.767 kb on + strand, within ABIE51_RS04310

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3
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927,351 + -0.3
927,351 + -0.6
927,354 + -0.4
927,354 + -0.0
927,354 + -0.1
927,354 + +0.3
927,354 + +0.2
927,354 + -0.2
927,354 + -0.9
927,355 - -1.6
927,391 + -0.9
927,395 + -2.2
927,395 + -2.1
927,395 + -2.6
927,396 - -2.1
929,089 + ABIE51_RS04310 0.42 -2.1
930,767 + ABIE51_RS04310 0.83 -4.5
930,767 + ABIE51_RS04310 0.83 -3.1

Or see this region's nucleotide sequence