Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04075 and ABIE51_RS04080 are separated by 117 nucleotides ABIE51_RS04080 and ABIE51_RS04085 overlap by 4 nucleotides ABIE51_RS04085 and ABIE51_RS04090 are separated by 82 nucleotides ABIE51_RS04090 and ABIE51_RS04095 are separated by 72 nucleotides
ABIE51_RS04075: ABIE51_RS04075 - 4-hydroxyphenylpyruvate dioxygenase, at 886,007 to 887,101
_RS04075
ABIE51_RS04080: ABIE51_RS04080 - DUF559 domain-containing protein, at 887,219 to 887,632
_RS04080
ABIE51_RS04085: ABIE51_RS04085 - homogentisate 1,2-dioxygenase, at 887,629 to 888,936
_RS04085
ABIE51_RS04090: ABIE51_RS04090 - hypothetical protein, at 889,019 to 889,654
_RS04090
ABIE51_RS04095: ABIE51_RS04095 - sodium:calcium antiporter, at 889,727 to 890,680
_RS04095
Position (kb) 887
888
889 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 886.727 kb on + strand, within ABIE51_RS04075 at 886.728 kb on - strand, within ABIE51_RS04075 at 886.728 kb on - strand, within ABIE51_RS04075 at 886.739 kb on + strand, within ABIE51_RS04075 at 886.739 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.787 kb on + strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.788 kb on - strand, within ABIE51_RS04075 at 886.847 kb on + strand, within ABIE51_RS04075 at 886.848 kb on - strand, within ABIE51_RS04075 at 886.848 kb on - strand, within ABIE51_RS04075 at 887.099 kb on + strand at 887.099 kb on + strand at 887.099 kb on + strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.100 kb on - strand at 887.150 kb on + strand at 887.150 kb on + strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.170 kb on - strand at 887.373 kb on - strand, within ABIE51_RS04080 at 887.388 kb on - strand, within ABIE51_RS04080 at 887.388 kb on - strand, within ABIE51_RS04080 at 887.413 kb on - strand, within ABIE51_RS04080 at 887.607 kb on + strand at 887.746 kb on + strand at 887.746 kb on + strand at 887.746 kb on + strand at 887.747 kb on - strand at 887.747 kb on - strand at 887.747 kb on - strand at 887.812 kb on + strand, within ABIE51_RS04085 at 887.854 kb on + strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 887.855 kb on - strand, within ABIE51_RS04085 at 888.026 kb on - strand, within ABIE51_RS04085 at 888.031 kb on + strand, within ABIE51_RS04085 at 888.117 kb on + strand, within ABIE51_RS04085 at 888.223 kb on + strand, within ABIE51_RS04085 at 888.224 kb on - strand, within ABIE51_RS04085 at 888.436 kb on + strand, within ABIE51_RS04085 at 888.436 kb on + strand, within ABIE51_RS04085 at 888.436 kb on + strand, within ABIE51_RS04085 at 888.437 kb on - strand, within ABIE51_RS04085 at 888.437 kb on - strand, within ABIE51_RS04085 at 888.445 kb on + strand, within ABIE51_RS04085 at 888.446 kb on - strand, within ABIE51_RS04085 at 888.446 kb on - strand, within ABIE51_RS04085 at 888.451 kb on + strand, within ABIE51_RS04085 at 888.451 kb on + strand, within ABIE51_RS04085 at 888.452 kb on - strand, within ABIE51_RS04085 at 888.452 kb on - strand, within ABIE51_RS04085 at 888.670 kb on + strand, within ABIE51_RS04085 at 888.671 kb on - strand, within ABIE51_RS04085 at 888.982 kb on + strand at 888.982 kb on + strand at 888.982 kb on + strand at 888.982 kb on + strand at 888.983 kb on - strand at 888.983 kb on - strand at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.319 kb on + strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.320 kb on - strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.322 kb on + strand, within ABIE51_RS04090 at 889.323 kb on - strand, within ABIE51_RS04090 at 889.323 kb on - strand, within ABIE51_RS04090 at 889.475 kb on + strand, within ABIE51_RS04090 at 889.476 kb on - strand, within ABIE51_RS04090 at 889.476 kb on - strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.508 kb on + strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.509 kb on - strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.526 kb on + strand, within ABIE51_RS04090 at 889.527 kb on - strand, within ABIE51_RS04090 at 889.527 kb on - strand, within ABIE51_RS04090 at 889.634 kb on + strand at 889.668 kb on + strand at 889.691 kb on + strand at 889.691 kb on + strand at 889.692 kb on - strand at 889.692 kb on - strand at 889.740 kb on + strand at 889.741 kb on - strand at 889.741 kb on - strand at 889.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 886,727 + ABIE51_RS04075 0.66 -4.3 886,728 - ABIE51_RS04075 0.66 -5.0 886,728 - ABIE51_RS04075 0.66 -6.3 886,739 + ABIE51_RS04075 0.67 -0.1 886,739 + ABIE51_RS04075 0.67 -3.6 886,787 + ABIE51_RS04075 0.71 -5.0 886,787 + ABIE51_RS04075 0.71 -3.9 886,787 + ABIE51_RS04075 0.71 -4.9 886,788 - ABIE51_RS04075 0.71 -4.5 886,788 - ABIE51_RS04075 0.71 -4.0 886,788 - ABIE51_RS04075 0.71 -3.7 886,788 - ABIE51_RS04075 0.71 -3.8 886,847 + ABIE51_RS04075 0.77 -2.1 886,848 - ABIE51_RS04075 0.77 -5.5 886,848 - ABIE51_RS04075 0.77 -2.8 887,099 + -0.1 887,099 + +2.1 887,099 + -0.1 887,100 - -0.1 887,100 - -1.5 887,100 - -2.4 887,100 - -2.3 887,100 - -1.9 887,100 - -0.6 887,100 - -1.2 887,100 - -0.8 887,100 - -1.6 887,100 - -0.6 887,150 + -0.3 887,150 + +0.2 887,151 - -0.4 887,151 - -0.7 887,170 - -0.5 887,373 - ABIE51_RS04080 0.37 -0.6 887,388 - ABIE51_RS04080 0.41 -1.0 887,388 - ABIE51_RS04080 0.41 -0.1 887,413 - ABIE51_RS04080 0.47 -0.4 887,607 + -0.4 887,746 + -4.1 887,746 + -5.8 887,746 + -4.0 887,747 - -4.8 887,747 - -3.3 887,747 - -3.8 887,812 + ABIE51_RS04085 0.14 -4.2 887,854 + ABIE51_RS04085 0.17 -2.7 887,855 - ABIE51_RS04085 0.17 -4.7 887,855 - ABIE51_RS04085 0.17 -5.5 887,855 - ABIE51_RS04085 0.17 -4.8 888,026 - ABIE51_RS04085 0.30 -4.7 888,031 + ABIE51_RS04085 0.31 -0.1 888,117 + ABIE51_RS04085 0.37 -3.1 888,223 + ABIE51_RS04085 0.45 -3.4 888,224 - ABIE51_RS04085 0.45 -3.3 888,436 + ABIE51_RS04085 0.62 -3.7 888,436 + ABIE51_RS04085 0.62 -3.8 888,436 + ABIE51_RS04085 0.62 -3.9 888,437 - ABIE51_RS04085 0.62 -0.1 888,437 - ABIE51_RS04085 0.62 -5.3 888,445 + ABIE51_RS04085 0.62 -4.7 888,446 - ABIE51_RS04085 0.62 -2.1 888,446 - ABIE51_RS04085 0.62 -4.7 888,451 + ABIE51_RS04085 0.63 -5.5 888,451 + ABIE51_RS04085 0.63 -3.8 888,452 - ABIE51_RS04085 0.63 -2.7 888,452 - ABIE51_RS04085 0.63 -3.7 888,670 + ABIE51_RS04085 0.80 -3.8 888,671 - ABIE51_RS04085 0.80 -5.8 888,982 + +1.7 888,982 + +0.7 888,982 + -0.6 888,982 + -0.4 888,983 - -0.4 888,983 - -0.7 889,319 + ABIE51_RS04090 0.47 +0.3 889,319 + ABIE51_RS04090 0.47 -0.4 889,319 + ABIE51_RS04090 0.47 +0.4 889,319 + ABIE51_RS04090 0.47 +0.6 889,319 + ABIE51_RS04090 0.47 -0.1 889,320 - ABIE51_RS04090 0.47 +0.6 889,320 - ABIE51_RS04090 0.47 +0.5 889,320 - ABIE51_RS04090 0.47 +0.8 889,320 - ABIE51_RS04090 0.47 +1.9 889,320 - ABIE51_RS04090 0.47 +0.5 889,322 + ABIE51_RS04090 0.48 +0.3 889,322 + ABIE51_RS04090 0.48 +0.5 889,322 + ABIE51_RS04090 0.48 +2.2 889,322 + ABIE51_RS04090 0.48 +0.7 889,323 - ABIE51_RS04090 0.48 -0.0 889,323 - ABIE51_RS04090 0.48 +0.9 889,475 + ABIE51_RS04090 0.72 +0.3 889,476 - ABIE51_RS04090 0.72 +0.3 889,476 - ABIE51_RS04090 0.72 +0.2 889,508 + ABIE51_RS04090 0.77 +0.7 889,508 + ABIE51_RS04090 0.77 +0.0 889,508 + ABIE51_RS04090 0.77 +0.5 889,508 + ABIE51_RS04090 0.77 +0.5 889,509 - ABIE51_RS04090 0.77 +0.2 889,509 - ABIE51_RS04090 0.77 +0.8 889,509 - ABIE51_RS04090 0.77 +0.3 889,509 - ABIE51_RS04090 0.77 +0.8 889,526 + ABIE51_RS04090 0.80 +0.4 889,526 + ABIE51_RS04090 0.80 +0.4 889,526 + ABIE51_RS04090 0.80 +0.3 889,527 - ABIE51_RS04090 0.80 +0.6 889,527 - ABIE51_RS04090 0.80 +0.2 889,634 + +0.5 889,668 + -0.1 889,691 + +0.8 889,691 + +0.2 889,692 - +1.1 889,692 - +1.0 889,740 + +1.1 889,741 - +0.5 889,741 - +0.2 889,753 - -0.3
Or see this region's nucleotide sequence