Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03115 and ABIE51_RS03120 are separated by 366 nucleotides ABIE51_RS03120 and ABIE51_RS03125 are separated by 89 nucleotides ABIE51_RS03125 and ABIE51_RS03130 are separated by 299 nucleotides
ABIE51_RS03115: ABIE51_RS03115 - hypothetical protein, at 689,831 to 690,586
_RS03115
ABIE51_RS03120: ABIE51_RS03120 - YbaK/EbsC family protein, at 690,953 to 691,420
_RS03120
ABIE51_RS03125: ABIE51_RS03125 - carbohydrate kinase family protein, at 691,510 to 692,442
_RS03125
ABIE51_RS03130: ABIE51_RS03130 - rod shape-determining protein, at 692,742 to 693,788
_RS03130
Position (kb) 691
692
693 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 690.809 kb on - strand at 690.809 kb on - strand at 691.024 kb on + strand, within ABIE51_RS03120 at 691.140 kb on - strand, within ABIE51_RS03120 at 691.154 kb on + strand, within ABIE51_RS03120 at 691.155 kb on - strand, within ABIE51_RS03120 at 691.268 kb on + strand, within ABIE51_RS03120 at 691.268 kb on + strand, within ABIE51_RS03120 at 691.268 kb on + strand, within ABIE51_RS03120 at 691.269 kb on - strand, within ABIE51_RS03120 at 691.269 kb on - strand, within ABIE51_RS03120 at 691.283 kb on + strand, within ABIE51_RS03120 at 691.418 kb on + strand at 691.418 kb on + strand at 691.418 kb on + strand at 691.419 kb on - strand at 691.419 kb on - strand at 691.419 kb on - strand at 691.646 kb on + strand, within ABIE51_RS03125 at 691.647 kb on - strand, within ABIE51_RS03125 at 691.664 kb on + strand, within ABIE51_RS03125 at 691.664 kb on + strand, within ABIE51_RS03125 at 691.664 kb on + strand, within ABIE51_RS03125 at 691.665 kb on - strand, within ABIE51_RS03125 at 691.665 kb on - strand, within ABIE51_RS03125 at 691.796 kb on + strand, within ABIE51_RS03125 at 691.796 kb on + strand, within ABIE51_RS03125 at 691.796 kb on + strand, within ABIE51_RS03125 at 691.796 kb on + strand, within ABIE51_RS03125 at 691.796 kb on + strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.797 kb on - strand, within ABIE51_RS03125 at 691.865 kb on + strand, within ABIE51_RS03125 at 691.866 kb on - strand, within ABIE51_RS03125 at 691.866 kb on - strand, within ABIE51_RS03125 at 691.883 kb on + strand, within ABIE51_RS03125 at 691.883 kb on + strand, within ABIE51_RS03125 at 691.884 kb on - strand, within ABIE51_RS03125 at 691.884 kb on - strand, within ABIE51_RS03125 at 691.884 kb on - strand, within ABIE51_RS03125 at 692.056 kb on + strand, within ABIE51_RS03125 at 692.056 kb on + strand, within ABIE51_RS03125 at 692.056 kb on + strand, within ABIE51_RS03125 at 692.056 kb on + strand, within ABIE51_RS03125 at 692.056 kb on + strand, within ABIE51_RS03125 at 692.056 kb on + strand, within ABIE51_RS03125 at 692.057 kb on - strand, within ABIE51_RS03125 at 692.057 kb on - strand, within ABIE51_RS03125 at 692.057 kb on - strand, within ABIE51_RS03125 at 692.069 kb on + strand, within ABIE51_RS03125 at 692.070 kb on - strand, within ABIE51_RS03125 at 692.070 kb on - strand, within ABIE51_RS03125 at 692.214 kb on - strand, within ABIE51_RS03125 at 692.279 kb on + strand, within ABIE51_RS03125 at 692.280 kb on - strand, within ABIE51_RS03125 at 692.280 kb on - strand, within ABIE51_RS03125 at 692.280 kb on - strand, within ABIE51_RS03125 at 692.378 kb on + strand at 692.411 kb on + strand at 692.411 kb on + strand at 692.412 kb on - strand at 692.412 kb on - strand at 692.532 kb on + strand at 692.533 kb on - strand at 692.533 kb on - strand at 692.538 kb on - strand at 692.598 kb on + strand at 692.598 kb on + strand at 692.598 kb on + strand at 692.599 kb on - strand at 692.599 kb on - strand at 692.599 kb on - strand at 692.652 kb on + strand at 692.653 kb on - strand at 692.683 kb on + strand at 692.683 kb on + strand at 692.684 kb on - strand at 692.688 kb on + strand at 692.688 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 690,809 - -0.7 690,809 - -0.8 691,024 + ABIE51_RS03120 0.15 -0.2 691,140 - ABIE51_RS03120 0.40 +0.1 691,154 + ABIE51_RS03120 0.43 +0.2 691,155 - ABIE51_RS03120 0.43 -0.1 691,268 + ABIE51_RS03120 0.67 +0.9 691,268 + ABIE51_RS03120 0.67 +0.8 691,268 + ABIE51_RS03120 0.67 -0.4 691,269 - ABIE51_RS03120 0.68 +0.1 691,269 - ABIE51_RS03120 0.68 +1.0 691,283 + ABIE51_RS03120 0.71 +0.0 691,418 + -0.0 691,418 + -0.4 691,418 + -0.3 691,419 - -0.7 691,419 - -0.1 691,419 - +0.5 691,646 + ABIE51_RS03125 0.15 -2.4 691,647 - ABIE51_RS03125 0.15 -2.1 691,664 + ABIE51_RS03125 0.17 -1.5 691,664 + ABIE51_RS03125 0.17 -2.6 691,664 + ABIE51_RS03125 0.17 -2.2 691,665 - ABIE51_RS03125 0.17 -3.8 691,665 - ABIE51_RS03125 0.17 -2.1 691,796 + ABIE51_RS03125 0.31 -0.7 691,796 + ABIE51_RS03125 0.31 -1.1 691,796 + ABIE51_RS03125 0.31 -1.6 691,796 + ABIE51_RS03125 0.31 -4.2 691,796 + ABIE51_RS03125 0.31 -3.3 691,797 - ABIE51_RS03125 0.31 -1.5 691,797 - ABIE51_RS03125 0.31 -1.1 691,797 - ABIE51_RS03125 0.31 -4.4 691,797 - ABIE51_RS03125 0.31 -2.2 691,797 - ABIE51_RS03125 0.31 -2.7 691,797 - ABIE51_RS03125 0.31 -3.0 691,797 - ABIE51_RS03125 0.31 -4.1 691,797 - ABIE51_RS03125 0.31 -3.1 691,865 + ABIE51_RS03125 0.38 -1.6 691,866 - ABIE51_RS03125 0.38 -2.3 691,866 - ABIE51_RS03125 0.38 -3.8 691,883 + ABIE51_RS03125 0.40 -2.7 691,883 + ABIE51_RS03125 0.40 -2.6 691,884 - ABIE51_RS03125 0.40 -2.2 691,884 - ABIE51_RS03125 0.40 -2.9 691,884 - ABIE51_RS03125 0.40 -3.0 692,056 + ABIE51_RS03125 0.59 -3.4 692,056 + ABIE51_RS03125 0.59 -1.7 692,056 + ABIE51_RS03125 0.59 -3.5 692,056 + ABIE51_RS03125 0.59 -2.3 692,056 + ABIE51_RS03125 0.59 -0.1 692,056 + ABIE51_RS03125 0.59 -1.3 692,057 - ABIE51_RS03125 0.59 -4.9 692,057 - ABIE51_RS03125 0.59 -2.9 692,057 - ABIE51_RS03125 0.59 -1.1 692,069 + ABIE51_RS03125 0.60 -3.1 692,070 - ABIE51_RS03125 0.60 -2.2 692,070 - ABIE51_RS03125 0.60 -5.1 692,214 - ABIE51_RS03125 0.75 -0.9 692,279 + ABIE51_RS03125 0.82 -1.7 692,280 - ABIE51_RS03125 0.83 -2.5 692,280 - ABIE51_RS03125 0.83 -3.7 692,280 - ABIE51_RS03125 0.83 -1.7 692,378 + -2.2 692,411 + -1.8 692,411 + -1.3 692,412 - -4.3 692,412 - -2.6 692,532 + -0.6 692,533 - -1.7 692,533 - -0.5 692,538 - -0.1 692,598 + -0.4 692,598 + -0.5 692,598 + -1.7 692,599 - -0.8 692,599 - -2.3 692,599 - -2.8 692,652 + +1.4 692,653 - +0.5 692,683 + +0.6 692,683 + -0.6 692,684 - -2.5 692,688 + +1.7 692,688 + +1.4
Or see this region's nucleotide sequence