Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03020 and ABIE51_RS03025 are separated by 12 nucleotides ABIE51_RS03025 and ABIE51_RS03030 overlap by 8 nucleotides ABIE51_RS03030 and ABIE51_RS03035 are separated by 73 nucleotides
ABIE51_RS03020: ABIE51_RS03020 - lipoprotein, at 671,505 to 671,780
_RS03020
ABIE51_RS03025: ABIE51_RS03025 - diaminopimelate epimerase, at 671,793 to 672,638
_RS03025
ABIE51_RS03030: ABIE51_RS03030 - DUF484 family protein, at 672,631 to 673,305
_RS03030
ABIE51_RS03035: ABIE51_RS03035 - tyrosine recombinase XerC, at 673,379 to 674,293
_RS03035
Position (kb) 672
673
674 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 672.775 kb on + strand, within ABIE51_RS03030 at 672.776 kb on - strand, within ABIE51_RS03030 at 672.840 kb on + strand, within ABIE51_RS03030 at 673.132 kb on + strand, within ABIE51_RS03030 at 673.132 kb on + strand, within ABIE51_RS03030 at 673.427 kb on + strand at 673.427 kb on + strand at 673.427 kb on + strand at 673.427 kb on + strand at 673.428 kb on - strand at 673.643 kb on + strand, within ABIE51_RS03035 at 673.643 kb on + strand, within ABIE51_RS03035 at 673.643 kb on + strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.644 kb on - strand, within ABIE51_RS03035 at 673.791 kb on + strand, within ABIE51_RS03035 at 673.820 kb on + strand, within ABIE51_RS03035 at 673.821 kb on - strand, within ABIE51_RS03035 at 674.166 kb on + strand, within ABIE51_RS03035 at 674.210 kb on + strand at 674.210 kb on + strand at 674.226 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 672,775 + ABIE51_RS03030 0.21 -0.8 672,776 - ABIE51_RS03030 0.21 -2.4 672,840 + ABIE51_RS03030 0.31 -2.5 673,132 + ABIE51_RS03030 0.74 -3.6 673,132 + ABIE51_RS03030 0.74 -3.8 673,427 + -2.4 673,427 + -0.1 673,427 + -0.4 673,427 + -0.7 673,428 - -1.1 673,643 + ABIE51_RS03035 0.29 +0.3 673,643 + ABIE51_RS03035 0.29 -0.5 673,643 + ABIE51_RS03035 0.29 -0.5 673,644 - ABIE51_RS03035 0.29 -0.5 673,644 - ABIE51_RS03035 0.29 -1.7 673,644 - ABIE51_RS03035 0.29 +0.9 673,644 - ABIE51_RS03035 0.29 -1.0 673,644 - ABIE51_RS03035 0.29 -0.9 673,644 - ABIE51_RS03035 0.29 -0.9 673,644 - ABIE51_RS03035 0.29 -0.1 673,791 + ABIE51_RS03035 0.45 -0.3 673,820 + ABIE51_RS03035 0.48 -0.5 673,821 - ABIE51_RS03035 0.48 +0.2 674,166 + ABIE51_RS03035 0.86 +0.2 674,210 + -0.1 674,210 + -1.1 674,226 - -1.1
Or see this region's nucleotide sequence