Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS02470 and ABIE51_RS02475 are separated by 47 nucleotides ABIE51_RS02475 and ABIE51_RS02480 are separated by 28 nucleotides ABIE51_RS02480 and ABIE51_RS02485 are separated by 379 nucleotides
ABIE51_RS02470: ABIE51_RS02470 - sel1 repeat family protein, at 548,210 to 549,292
_RS02470
ABIE51_RS02475: ABIE51_RS02475 - antibiotic biosynthesis monooxygenase, at 549,340 to 549,642
_RS02475
ABIE51_RS02480: ABIE51_RS02480 - TMEM175 family protein, at 549,671 to 550,372
_RS02480
ABIE51_RS02485: ABIE51_RS02485 - glutathione-independent formaldehyde dehydrogenase, at 550,752 to 551,891
_RS02485
Position (kb) 549
550
551 Strain fitness (log2 ratio) -1
0
1
2 at 548.697 kb on + strand, within ABIE51_RS02470 at 548.697 kb on + strand, within ABIE51_RS02470 at 548.698 kb on - strand, within ABIE51_RS02470 at 548.698 kb on - strand, within ABIE51_RS02470 at 548.713 kb on - strand, within ABIE51_RS02470 at 548.713 kb on - strand, within ABIE51_RS02470 at 548.725 kb on - strand, within ABIE51_RS02470 at 548.725 kb on - strand, within ABIE51_RS02470 at 548.791 kb on - strand, within ABIE51_RS02470 at 548.923 kb on + strand, within ABIE51_RS02470 at 548.923 kb on + strand, within ABIE51_RS02470 at 548.923 kb on + strand, within ABIE51_RS02470 at 548.924 kb on - strand, within ABIE51_RS02470 at 548.927 kb on + strand, within ABIE51_RS02470 at 549.071 kb on + strand, within ABIE51_RS02470 at 549.071 kb on + strand, within ABIE51_RS02470 at 549.305 kb on + strand at 549.305 kb on + strand at 549.306 kb on - strand at 549.306 kb on - strand at 549.306 kb on - strand at 549.351 kb on - strand at 549.833 kb on + strand, within ABIE51_RS02480 at 549.835 kb on + strand, within ABIE51_RS02480 at 549.836 kb on - strand, within ABIE51_RS02480 at 549.836 kb on - strand, within ABIE51_RS02480 at 549.836 kb on - strand, within ABIE51_RS02480 at 549.914 kb on + strand, within ABIE51_RS02480 at 549.915 kb on - strand, within ABIE51_RS02480 at 549.947 kb on + strand, within ABIE51_RS02480 at 550.131 kb on - strand, within ABIE51_RS02480 at 550.325 kb on + strand at 550.326 kb on - strand at 550.370 kb on + strand at 550.371 kb on - strand at 550.371 kb on - strand at 550.679 kb on - strand at 550.723 kb on + strand at 550.724 kb on - strand at 550.724 kb on - strand at 550.732 kb on - strand at 550.768 kb on - strand at 550.884 kb on + strand, within ABIE51_RS02485 at 550.884 kb on + strand, within ABIE51_RS02485 at 550.885 kb on - strand, within ABIE51_RS02485 at 550.945 kb on + strand, within ABIE51_RS02485 at 550.945 kb on + strand, within ABIE51_RS02485 at 551.139 kb on + strand, within ABIE51_RS02485 at 551.140 kb on - strand, within ABIE51_RS02485 at 551.140 kb on - strand, within ABIE51_RS02485 at 551.203 kb on - strand, within ABIE51_RS02485 at 551.212 kb on - strand, within ABIE51_RS02485 at 551.296 kb on - strand, within ABIE51_RS02485 at 551.296 kb on - strand, within ABIE51_RS02485 at 551.328 kb on + strand, within ABIE51_RS02485 at 551.353 kb on - strand, within ABIE51_RS02485
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 548,697 + ABIE51_RS02470 0.45 +0.7 548,697 + ABIE51_RS02470 0.45 +0.1 548,698 - ABIE51_RS02470 0.45 -0.2 548,698 - ABIE51_RS02470 0.45 +0.5 548,713 - ABIE51_RS02470 0.46 +0.3 548,713 - ABIE51_RS02470 0.46 -0.4 548,725 - ABIE51_RS02470 0.48 +0.4 548,725 - ABIE51_RS02470 0.48 +0.2 548,791 - ABIE51_RS02470 0.54 +0.0 548,923 + ABIE51_RS02470 0.66 +0.5 548,923 + ABIE51_RS02470 0.66 +0.4 548,923 + ABIE51_RS02470 0.66 -0.3 548,924 - ABIE51_RS02470 0.66 -0.8 548,927 + ABIE51_RS02470 0.66 -0.1 549,071 + ABIE51_RS02470 0.80 -0.2 549,071 + ABIE51_RS02470 0.80 -0.2 549,305 + +1.5 549,305 + +0.2 549,306 - -0.4 549,306 - -0.1 549,306 - +0.1 549,351 - +0.0 549,833 + ABIE51_RS02480 0.23 -0.1 549,835 + ABIE51_RS02480 0.23 +0.3 549,836 - ABIE51_RS02480 0.24 +0.3 549,836 - ABIE51_RS02480 0.24 +0.0 549,836 - ABIE51_RS02480 0.24 -0.1 549,914 + ABIE51_RS02480 0.35 +0.7 549,915 - ABIE51_RS02480 0.35 +0.3 549,947 + ABIE51_RS02480 0.39 +0.2 550,131 - ABIE51_RS02480 0.66 +1.5 550,325 + +0.0 550,326 - +0.4 550,370 + +0.6 550,371 - -0.1 550,371 - +0.5 550,679 - +1.0 550,723 + -0.1 550,724 - +1.4 550,724 - +0.2 550,732 - -0.1 550,768 - +0.3 550,884 + ABIE51_RS02485 0.12 +0.4 550,884 + ABIE51_RS02485 0.12 +0.6 550,885 - ABIE51_RS02485 0.12 +0.4 550,945 + ABIE51_RS02485 0.17 +0.2 550,945 + ABIE51_RS02485 0.17 -0.1 551,139 + ABIE51_RS02485 0.34 +0.1 551,140 - ABIE51_RS02485 0.34 -0.6 551,140 - ABIE51_RS02485 0.34 +0.4 551,203 - ABIE51_RS02485 0.40 +1.3 551,212 - ABIE51_RS02485 0.40 +0.6 551,296 - ABIE51_RS02485 0.48 +2.4 551,296 - ABIE51_RS02485 0.48 -0.0 551,328 + ABIE51_RS02485 0.51 +0.8 551,353 - ABIE51_RS02485 0.53 +1.1
Or see this region's nucleotide sequence