Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS19235

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
4,197,110	+				+0.1
4,197,111	-				+0.0
4,197,183	+				+0.2
4,197,183	+				+0.3
4,197,183	+				-0.3
4,197,183	+				+0.3
4,197,183	+				+0.2
4,197,183	+				-0.3
4,197,183	+				-0.4
4,197,184	-				+0.4
4,197,184	-				+0.3
4,197,184	-				+0.9
4,197,184	-				+0.3
4,197,184	-				-0.0
4,197,225	+				+1.6
4,197,225	+				+1.5
4,197,225	+				+1.2
4,197,225	+				+2.4
4,197,225	+				+0.6
4,197,225	+				+3.1
4,197,225	+				+1.6
4,197,225	+				+1.2
4,197,225	+				+1.5
4,197,225	+				+1.7
4,197,225	+				+1.3
4,197,225	+				+1.4
4,197,225	+				+0.9
4,197,225	+				+3.4
4,197,225	+				+1.5
4,197,226	-				-0.0
4,197,226	-				+0.4
4,197,226	-				-0.2
4,197,226	-				+0.3
4,197,226	-				-0.3
4,197,226	-				-0.1
4,197,226	-				-0.2
4,197,226	-				+0.1
4,197,226	-				-0.5
4,197,226	-				-0.1
4,197,226	-				-0.1
4,197,256	+				-1.1
4,197,256	+				-0.1
4,197,256	+				-0.3
4,197,257	-				+0.4
4,197,257	-				+0.3
4,197,338	-				+0.2
4,197,355	+				-0.1
4,197,355	+				+1.0
4,197,355	+				-0.9
4,197,356	-				-0.0
4,197,356	-				-0.2
4,197,529	+		ABIE51_RS19230	0.32	-0.6
4,197,601	+		ABIE51_RS19230	0.43	-0.4
4,197,601	+		ABIE51_RS19230	0.43	-0.0
4,197,602	-		ABIE51_RS19230	0.43	+0.1
4,197,602	-		ABIE51_RS19230	0.43	+0.3
4,197,602	-		ABIE51_RS19230	0.43	-0.4
4,197,602	-		ABIE51_RS19230	0.43	-0.6
4,197,624	+		ABIE51_RS19230	0.47	+0.3
4,197,625	-		ABIE51_RS19230	0.47	-0.5
4,197,835	+		ABIE51_RS19230	0.79	+0.2
4,197,835	+		ABIE51_RS19230	0.79	+0.5
4,197,835	+		ABIE51_RS19230	0.79	+0.7
4,197,835	+		ABIE51_RS19230	0.79	+0.2
4,197,835	+		ABIE51_RS19230	0.79	+0.0
4,197,835	+		ABIE51_RS19230	0.79	-0.3
4,197,835	+		ABIE51_RS19230	0.79	+0.4
4,197,835	+		ABIE51_RS19230	0.79	-1.0
4,197,836	-		ABIE51_RS19230	0.79	+0.3
4,197,836	-		ABIE51_RS19230	0.79	-0.0
4,197,836	-		ABIE51_RS19230	0.79	-0.7
4,197,836	-		ABIE51_RS19230	0.79	+0.3
4,197,836	-		ABIE51_RS19230	0.79	+0.4
4,197,836	-		ABIE51_RS19230	0.79	-0.3
4,197,836	-		ABIE51_RS19230	0.79	+0.7
4,197,836	-		ABIE51_RS19230	0.79	-0.3
4,197,836	-		ABIE51_RS19230	0.79	+0.2
4,197,836	-		ABIE51_RS19230	0.79	-0.3
4,197,836	-		ABIE51_RS19230	0.79	+0.1
4,197,836	-		ABIE51_RS19230	0.79	-0.5
4,197,836	-		ABIE51_RS19230	0.79	+0.0
4,197,836	-		ABIE51_RS19230	0.79	-0.1
4,197,836	-		ABIE51_RS19230	0.79	-0.2
4,197,882	-		ABIE51_RS19230	0.86	-0.2
4,198,038	+				+3.5
4,198,038	+				+3.7
4,198,038	+				+4.2
4,198,038	+				+2.8
4,198,039	-				+2.8
4,198,039	-				+2.8
4,198,056	+				+2.8
4,198,056	+				+3.4
4,198,057	-				+3.5
4,198,057	-				+2.5
4,198,057	-				+4.0
4,198,153	-				+3.4
4,198,153	-				+2.7
4,198,206	+		ABIE51_RS19235	0.13	+3.7
4,198,206	+		ABIE51_RS19235	0.13	+4.4
4,198,206	+		ABIE51_RS19235	0.13	+3.7
4,198,206	+		ABIE51_RS19235	0.13	+3.3
4,198,206	+		ABIE51_RS19235	0.13	+2.8
4,198,206	+		ABIE51_RS19235	0.13	+3.7
4,198,207	-		ABIE51_RS19235	0.13	+4.1
4,198,207	-		ABIE51_RS19235	0.13	+3.6
4,198,207	-		ABIE51_RS19235	0.13	+3.3
4,198,207	-		ABIE51_RS19235	0.13	+3.8
4,198,207	-		ABIE51_RS19235	0.13	+3.5
4,198,215	+		ABIE51_RS19235	0.14	+3.3
4,198,273	-		ABIE51_RS19235	0.18	+3.4
4,198,273	-		ABIE51_RS19235	0.18	+3.2
4,198,314	+		ABIE51_RS19235	0.21	+3.2
4,198,314	+		ABIE51_RS19235	0.21	+3.7
4,198,314	+		ABIE51_RS19235	0.21	+1.9
4,198,315	-		ABIE51_RS19235	0.21	+3.2
4,198,315	-		ABIE51_RS19235	0.21	+3.6
4,198,315	-		ABIE51_RS19235	0.21	+3.2
4,198,315	-		ABIE51_RS19235	0.21	+3.2
4,198,315	-		ABIE51_RS19235	0.21	+2.8
4,198,315	-		ABIE51_RS19235	0.21	+3.9
4,198,315	-		ABIE51_RS19235	0.21	+3.6
4,198,434	+		ABIE51_RS19235	0.30	+3.2
4,198,434	+		ABIE51_RS19235	0.30	+3.4
4,198,435	-		ABIE51_RS19235	0.30	+3.2
4,198,435	-		ABIE51_RS19235	0.30	+1.4
4,198,435	-		ABIE51_RS19235	0.30	+2.8
4,198,435	-		ABIE51_RS19235	0.30	+3.4
4,198,470	+		ABIE51_RS19235	0.33	+3.0
4,198,471	-		ABIE51_RS19235	0.33	+3.5
4,198,617	+		ABIE51_RS19235	0.44	+4.5
4,198,617	+		ABIE51_RS19235	0.44	+3.6
4,198,617	+		ABIE51_RS19235	0.44	+3.4
4,198,618	-		ABIE51_RS19235	0.44	+3.3
4,198,618	-		ABIE51_RS19235	0.44	+3.5
4,198,618	-		ABIE51_RS19235	0.44	+3.7
4,198,618	-		ABIE51_RS19235	0.44	+3.4
4,198,618	-		ABIE51_RS19235	0.44	+3.5
4,198,618	-		ABIE51_RS19235	0.44	+3.0
4,198,635	+		ABIE51_RS19235	0.45	+3.0
4,198,635	+		ABIE51_RS19235	0.45	+4.1
4,198,635	+		ABIE51_RS19235	0.45	+3.1
4,198,635	+		ABIE51_RS19235	0.45	+3.0
4,198,635	+		ABIE51_RS19235	0.45	+2.8
4,198,636	-		ABIE51_RS19235	0.45	+4.1
4,198,636	-		ABIE51_RS19235	0.45	+3.3
4,198,636	-		ABIE51_RS19235	0.45	+4.2
4,198,636	-		ABIE51_RS19235	0.45	+2.8
4,198,836	+		ABIE51_RS19235	0.60	+3.3
4,198,836	+		ABIE51_RS19235	0.60	+3.7
4,198,836	+		ABIE51_RS19235	0.60	+3.6
4,198,836	+		ABIE51_RS19235	0.60	+2.9
4,198,836	+		ABIE51_RS19235	0.60	+3.0
4,198,836	+		ABIE51_RS19235	0.60	+3.2
4,198,836	+		ABIE51_RS19235	0.60	+3.3
4,198,836	+		ABIE51_RS19235	0.60	+2.5
4,198,837	-		ABIE51_RS19235	0.60	+2.9
4,198,837	-		ABIE51_RS19235	0.60	+3.2
4,198,837	-		ABIE51_RS19235	0.60	+3.2
4,198,837	-		ABIE51_RS19235	0.60	+3.8
4,198,837	-		ABIE51_RS19235	0.60	+3.4
4,198,837	-		ABIE51_RS19235	0.60	+3.2
4,198,837	-		ABIE51_RS19235	0.60	+3.2
4,198,837	-		ABIE51_RS19235	0.60	+3.4
4,198,932	+		ABIE51_RS19235	0.67	+3.4
4,198,932	+		ABIE51_RS19235	0.67	+2.7
4,198,932	+		ABIE51_RS19235	0.67	+4.2
4,198,932	+		ABIE51_RS19235	0.67	+3.1
4,198,932	+		ABIE51_RS19235	0.67	+3.2
4,198,932	+		ABIE51_RS19235	0.67	+3.1
4,198,932	+		ABIE51_RS19235	0.67	+3.3
4,198,932	+		ABIE51_RS19235	0.67	+2.8
4,198,933	-		ABIE51_RS19235	0.67	+3.5
4,198,933	-		ABIE51_RS19235	0.67	+3.2
4,198,933	-		ABIE51_RS19235	0.67	+3.8
4,198,933	-		ABIE51_RS19235	0.67	+3.5
4,198,933	-		ABIE51_RS19235	0.67	+3.3
4,198,933	-		ABIE51_RS19235	0.67	+2.5
4,198,933	-		ABIE51_RS19235	0.67	+3.7
4,198,933	-		ABIE51_RS19235	0.67	+3.0
4,198,933	-		ABIE51_RS19235	0.67	+3.4
4,198,933	-		ABIE51_RS19235	0.67	+3.3
4,198,935	+		ABIE51_RS19235	0.67	+4.7
4,198,935	+		ABIE51_RS19235	0.67	+3.2
4,198,935	+		ABIE51_RS19235	0.67	+3.2
4,198,935	+		ABIE51_RS19235	0.67	+3.4
4,198,935	+		ABIE51_RS19235	0.67	+3.8
4,198,935	+		ABIE51_RS19235	0.67	+4.1
4,198,936	-		ABIE51_RS19235	0.67	+3.7
4,198,959	+		ABIE51_RS19235	0.69	+3.5
4,198,960	-		ABIE51_RS19235	0.69	+3.5
4,198,960	-		ABIE51_RS19235	0.69	+3.6
4,199,130	+		ABIE51_RS19235	0.81	+3.4
4,199,130	+		ABIE51_RS19235	0.81	+2.6
4,199,130	+		ABIE51_RS19235	0.81	+2.3
4,199,130	+		ABIE51_RS19235	0.81	+3.1
4,199,130	+		ABIE51_RS19235	0.81	+2.8
4,199,130	+		ABIE51_RS19235	0.81	+3.5
4,199,130	+		ABIE51_RS19235	0.81	+2.7
4,199,131	-		ABIE51_RS19235	0.82	+1.9
4,199,131	-		ABIE51_RS19235	0.82	+3.6
4,199,131	-		ABIE51_RS19235	0.82	+3.2
4,199,386	+				+3.0
4,199,386	+				+2.2
4,199,386	+				+2.7
4,199,386	+				+2.1
4,199,386	+				+3.4
4,199,386	+				+3.1
4,199,387	-				-0.8
4,199,387	-				+0.4
4,199,387	-				-0.3
4,199,387	-				+0.3
4,199,387	-				+0.7
4,199,387	-				+3.5
4,199,387	-				-0.0
4,199,387	-				+1.1
4,199,387	-				+0.5
4,199,387	-				+0.4
4,199,387	-				+0.8
4,199,387	-				+1.2
4,199,387	-				+0.4
4,199,387	-				-1.2
4,199,401	+				+1.5
4,199,402	-				-0.0
4,199,492	+				-0.3
4,199,493	-				+0.4
4,199,502	+				+0.2
4,199,503	-				-0.1
4,199,503	-				+0.4
4,199,509	+				+0.0
4,199,509	+				+0.5
4,199,509	+				-0.8
4,199,509	+				+0.3
4,199,509	+				-0.7
4,199,509	+				-0.0
4,199,509	+				+0.2
4,199,509	+				-0.6
4,199,509	+				+0.3
4,199,509	+				+0.6
4,199,509	+				-1.1
4,199,509	+				+0.4
4,199,509	+				+0.4
4,199,509	+				-0.0
4,199,509	+				+0.6
4,199,509	+				-0.3
4,199,509	+				-0.0
4,199,509	+				+0.5
4,199,509	+				+0.2
4,199,509	+				-0.5
4,199,509	+				-0.5
4,199,509	+				+1.3
4,199,509	+				+0.2
4,199,509	+				-0.1
4,199,509	+				-1.0
4,199,509	+				+0.5
4,199,509	+				+0.1
4,199,509	+				+0.6
4,199,509	+				-0.2
4,199,510	-				-0.6
4,199,510	-				-0.2
4,199,510	-				-0.3
4,199,510	-				+0.2
4,199,510	-				-0.1
4,199,510	-				-0.1
4,199,510	-				-0.2
4,199,510	-				-0.1
4,199,510	-				-0.6
4,199,510	-				-0.4
4,199,510	-				+0.5
4,199,510	-				-0.1
4,199,510	-				-1.0
4,199,510	-				-0.4
4,199,510	-				+0.7
4,199,510	-				+0.3
4,199,510	-				-0.5
4,199,510	-				+0.3
4,199,510	-				-1.0
4,199,510	-				-0.5
4,199,510	-				-0.2
4,199,510	-				-0.0
4,199,510	-				+1.2
4,199,510	-				-0.2
4,199,511	+				-0.8
4,199,511	+				-0.2
4,199,511	+				-0.0
4,199,511	+				-1.6
4,199,511	+				+0.5
4,199,511	+				-0.6
4,199,512	-				+0.0
4,199,512	-				-0.6
4,199,512	-				-0.2
4,199,512	-				+0.3
4,199,523	+				+0.4
4,199,534	+				-0.4
4,199,535	-				-1.0
4,199,535	-				+0.1
4,199,535	-				+1.5
4,199,535	-				-0.2
4,199,535	-				+0.3
4,199,535	-				-0.4
4,199,541	-				-1.0
4,199,564	+				+0.1
4,199,564	+				-0.1
4,199,564	+				-0.0
4,199,564	+				+0.1
4,199,564	+				+0.2
4,199,564	+				+0.2
4,199,564	+				-0.2
4,199,565	-				-0.4
4,199,565	-				-0.6
4,199,565	-				-0.1
4,199,565	-				-1.7
4,199,565	-				+0.2
4,200,065	+		ABIE51_RS19240	0.63	-0.8
4,200,065	+		ABIE51_RS19240	0.63	-0.0
4,200,065	+		ABIE51_RS19240	0.63	-0.0
4,200,065	+		ABIE51_RS19240	0.63	-0.9
4,200,065	+		ABIE51_RS19240	0.63	-0.0
4,200,065	+		ABIE51_RS19240	0.63	-0.4
4,200,065	+		ABIE51_RS19240	0.63	-0.9
4,200,066	-		ABIE51_RS19240	0.63	-2.4
4,200,066	-		ABIE51_RS19240	0.63	-0.2
4,200,066	-		ABIE51_RS19240	0.63	-1.2
4,200,066	-		ABIE51_RS19240	0.63	-0.3
4,200,066	-		ABIE51_RS19240	0.63	-1.6