Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS05465 and ABIE51_RS05470 are separated by 63 nucleotides ABIE51_RS05470 and ABIE51_RS05475 are separated by 14 nucleotides ABIE51_RS05475 and ABIE51_RS05480 are separated by 102 nucleotides
ABIE51_RS05465: ABIE51_RS05465 - adenine phosphoribosyltransferase, at 1,180,842 to 1,181,363
_RS05465
ABIE51_RS05470: ABIE51_RS05470 - hypothetical protein, at 1,181,427 to 1,182,002
_RS05470
ABIE51_RS05475: ABIE51_RS05475 - LysR substrate-binding domain-containing protein, at 1,182,017 to 1,182,952
_RS05475
ABIE51_RS05480: ABIE51_RS05480 - alkyl hydroperoxide reductase subunit F, at 1,183,055 to 1,184,641
_RS05480
Position (kb) 1182
1183 Strain fitness (log2 ratio) -1
0
1 at 1181.121 kb on + strand, within ABIE51_RS05465 at 1181.121 kb on + strand, within ABIE51_RS05465 at 1181.358 kb on + strand at 1181.359 kb on - strand at 1181.359 kb on - strand at 1181.442 kb on + strand at 1181.443 kb on - strand at 1181.541 kb on + strand, within ABIE51_RS05470 at 1181.542 kb on - strand, within ABIE51_RS05470 at 1181.637 kb on + strand, within ABIE51_RS05470 at 1181.637 kb on + strand, within ABIE51_RS05470 at 1181.637 kb on + strand, within ABIE51_RS05470 at 1181.638 kb on - strand, within ABIE51_RS05470 at 1181.638 kb on - strand, within ABIE51_RS05470 at 1181.638 kb on - strand, within ABIE51_RS05470 at 1181.638 kb on - strand, within ABIE51_RS05470 at 1181.638 kb on - strand, within ABIE51_RS05470 at 1181.742 kb on + strand, within ABIE51_RS05470 at 1181.742 kb on + strand, within ABIE51_RS05470 at 1181.743 kb on - strand, within ABIE51_RS05470 at 1181.743 kb on - strand, within ABIE51_RS05470 at 1181.745 kb on + strand, within ABIE51_RS05470 at 1181.745 kb on + strand, within ABIE51_RS05470 at 1181.746 kb on - strand, within ABIE51_RS05470 at 1182.642 kb on + strand, within ABIE51_RS05475 at 1182.643 kb on - strand, within ABIE51_RS05475 at 1182.643 kb on - strand, within ABIE51_RS05475 at 1182.930 kb on + strand at 1182.994 kb on + strand at 1183.056 kb on + strand at 1183.359 kb on + strand, within ABIE51_RS05480 at 1183.360 kb on - strand, within ABIE51_RS05480 at 1183.614 kb on + strand, within ABIE51_RS05480 at 1183.614 kb on + strand, within ABIE51_RS05480 at 1183.615 kb on - strand, within ABIE51_RS05480 at 1183.615 kb on - strand, within ABIE51_RS05480 at 1183.635 kb on + strand, within ABIE51_RS05480 at 1183.635 kb on + strand, within ABIE51_RS05480 at 1183.806 kb on + strand, within ABIE51_RS05480 at 1183.806 kb on + strand, within ABIE51_RS05480 at 1183.857 kb on + strand, within ABIE51_RS05480 at 1183.858 kb on - strand, within ABIE51_RS05480 at 1183.858 kb on - strand, within ABIE51_RS05480
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 1,181,121 + ABIE51_RS05465 0.53 +0.5 1,181,121 + ABIE51_RS05465 0.53 +0.3 1,181,358 + +0.3 1,181,359 - -0.3 1,181,359 - -0.3 1,181,442 + +0.0 1,181,443 - -0.6 1,181,541 + ABIE51_RS05470 0.20 +0.8 1,181,542 - ABIE51_RS05470 0.20 -0.0 1,181,637 + ABIE51_RS05470 0.36 +0.3 1,181,637 + ABIE51_RS05470 0.36 -0.4 1,181,637 + ABIE51_RS05470 0.36 +0.0 1,181,638 - ABIE51_RS05470 0.37 -0.0 1,181,638 - ABIE51_RS05470 0.37 -0.3 1,181,638 - ABIE51_RS05470 0.37 +0.2 1,181,638 - ABIE51_RS05470 0.37 +0.4 1,181,638 - ABIE51_RS05470 0.37 -0.3 1,181,742 + ABIE51_RS05470 0.55 -0.3 1,181,742 + ABIE51_RS05470 0.55 +0.0 1,181,743 - ABIE51_RS05470 0.55 +0.1 1,181,743 - ABIE51_RS05470 0.55 +0.0 1,181,745 + ABIE51_RS05470 0.55 -0.3 1,181,745 + ABIE51_RS05470 0.55 -0.1 1,181,746 - ABIE51_RS05470 0.55 -0.1 1,182,642 + ABIE51_RS05475 0.67 +0.8 1,182,643 - ABIE51_RS05475 0.67 -0.1 1,182,643 - ABIE51_RS05475 0.67 -0.0 1,182,930 + -0.7 1,182,994 + -0.3 1,183,056 + -0.5 1,183,359 + ABIE51_RS05480 0.19 -0.2 1,183,360 - ABIE51_RS05480 0.19 +0.2 1,183,614 + ABIE51_RS05480 0.35 -0.4 1,183,614 + ABIE51_RS05480 0.35 +0.1 1,183,615 - ABIE51_RS05480 0.35 -0.2 1,183,615 - ABIE51_RS05480 0.35 -0.1 1,183,635 + ABIE51_RS05480 0.37 -0.0 1,183,635 + ABIE51_RS05480 0.37 +0.6 1,183,806 + ABIE51_RS05480 0.47 +0.1 1,183,806 + ABIE51_RS05480 0.47 -0.3 1,183,857 + ABIE51_RS05480 0.51 +1.2 1,183,858 - ABIE51_RS05480 0.51 +0.6 1,183,858 - ABIE51_RS05480 0.51 -0.2
Or see this region's nucleotide sequence