Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03635 and ABIE51_RS03640 are separated by 3 nucleotides ABIE51_RS03640 and ABIE51_RS03645 overlap by 4 nucleotides
ABIE51_RS03635: ABIE51_RS03635 - alpha-glucuronidase family glycosyl hydrolase, at 795,126 to 797,363
_RS03635
ABIE51_RS03640: ABIE51_RS03640 - sialate O-acetylesterase, at 797,367 to 799,370
_RS03640
ABIE51_RS03645: ABIE51_RS03645 - D-mannonate dehydratase ManD, at 799,367 to 800,620
_RS03645
Position (kb) 797
798
799
800 Strain fitness (log2 ratio) -2
-1
0
1 at 796.422 kb on + strand, within ABIE51_RS03635 at 796.491 kb on + strand, within ABIE51_RS03635 at 796.648 kb on - strand, within ABIE51_RS03635 at 796.794 kb on + strand, within ABIE51_RS03635 at 796.794 kb on + strand, within ABIE51_RS03635 at 796.795 kb on - strand, within ABIE51_RS03635 at 796.842 kb on + strand, within ABIE51_RS03635 at 796.896 kb on + strand, within ABIE51_RS03635 at 796.899 kb on + strand, within ABIE51_RS03635 at 796.899 kb on + strand, within ABIE51_RS03635 at 797.104 kb on - strand, within ABIE51_RS03635 at 797.253 kb on + strand at 797.322 kb on + strand at 797.649 kb on + strand, within ABIE51_RS03640 at 797.656 kb on + strand, within ABIE51_RS03640 at 797.657 kb on - strand, within ABIE51_RS03640 at 797.922 kb on + strand, within ABIE51_RS03640 at 797.925 kb on + strand, within ABIE51_RS03640 at 797.925 kb on + strand, within ABIE51_RS03640 at 798.045 kb on + strand, within ABIE51_RS03640 at 798.045 kb on + strand, within ABIE51_RS03640 at 798.400 kb on - strand, within ABIE51_RS03640 at 798.400 kb on - strand, within ABIE51_RS03640 at 798.651 kb on + strand, within ABIE51_RS03640 at 798.651 kb on + strand, within ABIE51_RS03640 at 798.651 kb on + strand, within ABIE51_RS03640 at 798.682 kb on - strand, within ABIE51_RS03640 at 798.705 kb on + strand, within ABIE51_RS03640 at 798.742 kb on - strand, within ABIE51_RS03640 at 798.828 kb on + strand, within ABIE51_RS03640 at 798.828 kb on + strand, within ABIE51_RS03640 at 798.829 kb on - strand, within ABIE51_RS03640 at 798.829 kb on - strand, within ABIE51_RS03640 at 798.952 kb on - strand, within ABIE51_RS03640 at 799.020 kb on + strand, within ABIE51_RS03640 at 799.186 kb on - strand at 799.260 kb on + strand at 799.340 kb on + strand at 799.381 kb on + strand at 799.547 kb on + strand, within ABIE51_RS03645 at 799.547 kb on + strand, within ABIE51_RS03645 at 799.823 kb on + strand, within ABIE51_RS03645 at 799.824 kb on - strand, within ABIE51_RS03645 at 799.887 kb on - strand, within ABIE51_RS03645 at 799.967 kb on + strand, within ABIE51_RS03645 at 800.065 kb on - strand, within ABIE51_RS03645 at 800.252 kb on + strand, within ABIE51_RS03645
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 796,422 + ABIE51_RS03635 0.58 -1.6 796,491 + ABIE51_RS03635 0.61 +0.2 796,648 - ABIE51_RS03635 0.68 +1.1 796,794 + ABIE51_RS03635 0.75 +0.1 796,794 + ABIE51_RS03635 0.75 -1.5 796,795 - ABIE51_RS03635 0.75 -0.1 796,842 + ABIE51_RS03635 0.77 +0.4 796,896 + ABIE51_RS03635 0.79 -0.0 796,899 + ABIE51_RS03635 0.79 -0.2 796,899 + ABIE51_RS03635 0.79 +0.8 797,104 - ABIE51_RS03635 0.88 +0.3 797,253 + -0.2 797,322 + -0.0 797,649 + ABIE51_RS03640 0.14 -0.7 797,656 + ABIE51_RS03640 0.14 +0.0 797,657 - ABIE51_RS03640 0.14 +0.5 797,922 + ABIE51_RS03640 0.28 +0.5 797,925 + ABIE51_RS03640 0.28 +0.2 797,925 + ABIE51_RS03640 0.28 -0.7 798,045 + ABIE51_RS03640 0.34 +0.4 798,045 + ABIE51_RS03640 0.34 -1.6 798,400 - ABIE51_RS03640 0.52 +0.1 798,400 - ABIE51_RS03640 0.52 -0.6 798,651 + ABIE51_RS03640 0.64 -0.2 798,651 + ABIE51_RS03640 0.64 +0.0 798,651 + ABIE51_RS03640 0.64 +0.0 798,682 - ABIE51_RS03640 0.66 -0.0 798,705 + ABIE51_RS03640 0.67 -0.0 798,742 - ABIE51_RS03640 0.69 +0.0 798,828 + ABIE51_RS03640 0.73 -0.0 798,828 + ABIE51_RS03640 0.73 +0.2 798,829 - ABIE51_RS03640 0.73 +0.2 798,829 - ABIE51_RS03640 0.73 +0.1 798,952 - ABIE51_RS03640 0.79 +0.5 799,020 + ABIE51_RS03640 0.82 -0.0 799,186 - -0.8 799,260 + -0.2 799,340 + -0.2 799,381 + -0.1 799,547 + ABIE51_RS03645 0.14 +0.2 799,547 + ABIE51_RS03645 0.14 -0.7 799,823 + ABIE51_RS03645 0.36 -0.5 799,824 - ABIE51_RS03645 0.36 +0.0 799,887 - ABIE51_RS03645 0.41 +0.7 799,967 + ABIE51_RS03645 0.48 -2.7 800,065 - ABIE51_RS03645 0.56 +0.6 800,252 + ABIE51_RS03645 0.71 +1.0
Or see this region's nucleotide sequence