Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS16230

Experiment: Ying_sugar7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep A; time point 3
3,520,754	+				-0.1
3,520,781	+				+0.4
3,520,818	-		ABIE51_RS16225	0.12	+0.7
3,520,821	-		ABIE51_RS16225	0.12	-0.2
3,520,821	-		ABIE51_RS16225	0.12	-0.6
3,520,821	-		ABIE51_RS16225	0.12	+0.2
3,520,821	-		ABIE51_RS16225	0.12	+0.3
3,520,830	-		ABIE51_RS16225	0.14	-0.1
3,520,830	-		ABIE51_RS16225	0.14	+0.0
3,520,833	+		ABIE51_RS16225	0.14	-0.1
3,520,904	+		ABIE51_RS16225	0.26	+0.7
3,520,904	+		ABIE51_RS16225	0.26	+0.1
3,520,904	+		ABIE51_RS16225	0.26	+2.6
3,520,905	-		ABIE51_RS16225	0.26	+0.7
3,521,030	+		ABIE51_RS16225	0.46	+0.2
3,521,030	+		ABIE51_RS16225	0.46	+0.5
3,521,030	+		ABIE51_RS16225	0.46	-0.6
3,521,030	+		ABIE51_RS16225	0.46	-0.8
3,521,031	-		ABIE51_RS16225	0.46	-0.2
3,521,118	+		ABIE51_RS16225	0.60	-0.4
3,521,118	+		ABIE51_RS16225	0.60	-0.2
3,521,141	+		ABIE51_RS16225	0.64	-1.4
3,521,141	+		ABIE51_RS16225	0.64	+0.9
3,521,142	-		ABIE51_RS16225	0.64	+0.5
3,521,402	+				-0.0
3,521,402	+				-0.9
3,521,402	+				+0.9
3,521,403	-				+0.0
3,521,403	-				+0.1
3,521,403	-				+0.3
3,521,403	-				-0.1
3,521,403	-				+0.0
3,521,403	-				-0.2
3,521,403	-				-0.5
3,521,403	-				-0.3
3,521,500	+				-0.0
3,521,500	+				+0.4
3,521,500	+				+0.4
3,521,501	-				+0.6
3,521,501	-				+0.2
3,521,754	-		ABIE51_RS16230	0.30	+0.1
3,521,779	+		ABIE51_RS16230	0.34	+1.8
3,521,779	+		ABIE51_RS16230	0.34	-0.0
3,521,797	+		ABIE51_RS16230	0.36	-0.2
3,521,860	+		ABIE51_RS16230	0.45	-0.9
3,521,860	+		ABIE51_RS16230	0.45	-1.8
3,521,861	-		ABIE51_RS16230	0.45	-0.1
3,521,861	-		ABIE51_RS16230	0.45	+0.3
3,521,861	-		ABIE51_RS16230	0.45	-0.0
3,521,881	+		ABIE51_RS16230	0.48	-0.7
3,521,881	+		ABIE51_RS16230	0.48	+0.1
3,521,881	+		ABIE51_RS16230	0.48	-1.2
3,521,881	+		ABIE51_RS16230	0.48	-0.1
3,521,881	+		ABIE51_RS16230	0.48	+0.1
3,521,882	-		ABIE51_RS16230	0.48	-0.9
3,521,882	-		ABIE51_RS16230	0.48	-0.0
3,521,882	-		ABIE51_RS16230	0.48	-0.1
3,521,882	-		ABIE51_RS16230	0.48	+0.2
3,521,900	+		ABIE51_RS16230	0.50	+0.2
3,521,900	+		ABIE51_RS16230	0.50	+0.5
3,521,900	+		ABIE51_RS16230	0.50	-0.6
3,521,900	+		ABIE51_RS16230	0.50	-1.8
3,521,901	-		ABIE51_RS16230	0.50	-1.0
3,521,901	-		ABIE51_RS16230	0.50	-0.3
3,522,019	+		ABIE51_RS16230	0.67	-0.1
3,522,019	+		ABIE51_RS16230	0.67	-0.1
3,522,019	+		ABIE51_RS16230	0.67	-0.8
3,522,019	+		ABIE51_RS16230	0.67	+0.4
3,522,020	-		ABIE51_RS16230	0.67	+0.3
3,522,020	-		ABIE51_RS16230	0.67	-0.6
3,522,020	-		ABIE51_RS16230	0.67	-0.5
3,522,020	-		ABIE51_RS16230	0.67	-0.2
3,522,020	-		ABIE51_RS16230	0.67	-0.2
3,522,020	-		ABIE51_RS16230	0.67	+0.4
3,522,118	+		ABIE51_RS16230	0.80	+0.2
3,522,118	+		ABIE51_RS16230	0.80	+0.1
3,522,118	+		ABIE51_RS16230	0.80	-0.5
3,522,118	+		ABIE51_RS16230	0.80	-0.4
3,522,118	+		ABIE51_RS16230	0.80	+0.3
3,522,118	+		ABIE51_RS16230	0.80	-0.3
3,522,118	+		ABIE51_RS16230	0.80	-0.0
3,522,118	+		ABIE51_RS16230	0.80	-0.4
3,522,118	+		ABIE51_RS16230	0.80	+0.3
3,522,119	-		ABIE51_RS16230	0.80	-1.0
3,522,119	-		ABIE51_RS16230	0.80	-0.2
3,522,120	+		ABIE51_RS16230	0.80	+0.1
3,522,120	+		ABIE51_RS16230	0.80	-0.1
3,522,121	-		ABIE51_RS16230	0.80	-0.5
3,522,121	-		ABIE51_RS16230	0.80	+2.1
3,522,121	-		ABIE51_RS16230	0.80	-0.6
3,522,121	-		ABIE51_RS16230	0.80	-0.2
3,522,139	+		ABIE51_RS16230	0.83	+0.4
3,522,139	+		ABIE51_RS16230	0.83	+0.1
3,522,139	+		ABIE51_RS16230	0.83	-0.2
3,522,140	-		ABIE51_RS16230	0.83	-0.2
3,522,140	-		ABIE51_RS16230	0.83	-0.5
3,522,140	-		ABIE51_RS16230	0.83	-0.2
3,522,140	-		ABIE51_RS16230	0.83	-0.4
3,522,140	-		ABIE51_RS16230	0.83	-0.6
3,522,211	+				+0.1
3,522,211	+				-0.6
3,522,211	+				-0.5
3,522,211	+				+0.3
3,522,211	+				-0.1
3,522,211	+				-0.3
3,522,211	+				-0.3
3,522,212	-				-0.5
3,522,212	-				+0.2
3,522,212	-				-0.2
3,522,212	-				-0.2
3,522,722	+		ABIE51_RS16235	0.16	-0.5
3,522,722	+		ABIE51_RS16235	0.16	+0.3
3,522,723	-		ABIE51_RS16235	0.16	+0.1
3,522,723	-		ABIE51_RS16235	0.16	-0.2
3,523,085	-		ABIE51_RS16235	0.35	-1.9