Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04100 and ABIE51_RS04105 are separated by 593 nucleotides ABIE51_RS04105 and ABIE51_RS04110 are separated by 1 nucleotides
ABIE51_RS04100: ABIE51_RS04100 - Na+/H+ antiporter NhaA, at 890,754 to 891,974
_RS04100
ABIE51_RS04105: ABIE51_RS04105 - hypothetical protein, at 892,568 to 892,855
_RS04105
ABIE51_RS04110: ABIE51_RS04110 - DMT family transporter, at 892,857 to 893,744
_RS04110
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 892.201 kb on + strand at 892.201 kb on + strand at 892.202 kb on - strand at 892.390 kb on + strand at 892.390 kb on + strand at 892.391 kb on - strand at 892.391 kb on - strand at 892.493 kb on + strand at 892.562 kb on + strand at 892.562 kb on + strand at 892.562 kb on + strand at 892.562 kb on + strand at 892.562 kb on + strand at 892.562 kb on + strand at 892.562 kb on + strand at 892.563 kb on - strand at 892.563 kb on - strand at 892.563 kb on - strand at 892.593 kb on - strand at 892.614 kb on + strand, within ABIE51_RS04105 at 892.614 kb on + strand, within ABIE51_RS04105 at 892.614 kb on + strand, within ABIE51_RS04105 at 893.068 kb on + strand, within ABIE51_RS04110 at 893.068 kb on + strand, within ABIE51_RS04110 at 893.068 kb on + strand, within ABIE51_RS04110 at 893.068 kb on + strand, within ABIE51_RS04110 at 893.068 kb on + strand, within ABIE51_RS04110 at 893.068 kb on + strand, within ABIE51_RS04110 at 893.069 kb on - strand, within ABIE51_RS04110 at 893.069 kb on - strand, within ABIE51_RS04110 at 893.069 kb on - strand, within ABIE51_RS04110 at 893.069 kb on - strand, within ABIE51_RS04110 at 893.071 kb on + strand, within ABIE51_RS04110 at 893.071 kb on + strand, within ABIE51_RS04110 at 893.071 kb on + strand, within ABIE51_RS04110 at 893.072 kb on - strand, within ABIE51_RS04110 at 893.072 kb on - strand, within ABIE51_RS04110 at 893.072 kb on - strand, within ABIE51_RS04110 at 893.072 kb on - strand, within ABIE51_RS04110 at 893.072 kb on - strand, within ABIE51_RS04110 at 893.072 kb on - strand, within ABIE51_RS04110 at 893.072 kb on - strand, within ABIE51_RS04110 at 893.110 kb on + strand, within ABIE51_RS04110 at 893.111 kb on - strand, within ABIE51_RS04110 at 893.111 kb on - strand, within ABIE51_RS04110 at 893.236 kb on + strand, within ABIE51_RS04110 at 893.236 kb on + strand, within ABIE51_RS04110 at 893.236 kb on + strand, within ABIE51_RS04110 at 893.237 kb on - strand, within ABIE51_RS04110 at 893.237 kb on - strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.455 kb on + strand, within ABIE51_RS04110 at 893.456 kb on - strand, within ABIE51_RS04110 at 893.456 kb on - strand, within ABIE51_RS04110 at 893.456 kb on - strand, within ABIE51_RS04110 at 893.456 kb on - strand, within ABIE51_RS04110 at 893.456 kb on - strand, within ABIE51_RS04110
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 892,201 + +0.1 892,201 + -0.0 892,202 - -1.0 892,390 + -1.2 892,390 + -0.6 892,391 - -1.8 892,391 - -0.7 892,493 + -0.8 892,562 + -0.7 892,562 + +0.3 892,562 + -0.0 892,562 + -0.0 892,562 + -0.9 892,562 + -1.1 892,562 + -0.4 892,563 - -0.5 892,563 - -1.1 892,563 - -0.6 892,593 - -0.9 892,614 + ABIE51_RS04105 0.16 -0.1 892,614 + ABIE51_RS04105 0.16 +1.8 892,614 + ABIE51_RS04105 0.16 -0.5 893,068 + ABIE51_RS04110 0.24 -0.4 893,068 + ABIE51_RS04110 0.24 +0.3 893,068 + ABIE51_RS04110 0.24 +0.0 893,068 + ABIE51_RS04110 0.24 +1.8 893,068 + ABIE51_RS04110 0.24 +0.3 893,068 + ABIE51_RS04110 0.24 -0.3 893,069 - ABIE51_RS04110 0.24 +0.1 893,069 - ABIE51_RS04110 0.24 +0.2 893,069 - ABIE51_RS04110 0.24 -0.0 893,069 - ABIE51_RS04110 0.24 -0.7 893,071 + ABIE51_RS04110 0.24 +1.0 893,071 + ABIE51_RS04110 0.24 +0.2 893,071 + ABIE51_RS04110 0.24 +0.3 893,072 - ABIE51_RS04110 0.24 -0.5 893,072 - ABIE51_RS04110 0.24 +0.5 893,072 - ABIE51_RS04110 0.24 +0.4 893,072 - ABIE51_RS04110 0.24 -0.3 893,072 - ABIE51_RS04110 0.24 +0.8 893,072 - ABIE51_RS04110 0.24 -0.7 893,072 - ABIE51_RS04110 0.24 -0.3 893,110 + ABIE51_RS04110 0.28 +0.1 893,111 - ABIE51_RS04110 0.29 +0.3 893,111 - ABIE51_RS04110 0.29 -0.4 893,236 + ABIE51_RS04110 0.43 +0.3 893,236 + ABIE51_RS04110 0.43 -0.4 893,236 + ABIE51_RS04110 0.43 -0.5 893,237 - ABIE51_RS04110 0.43 +0.5 893,237 - ABIE51_RS04110 0.43 -0.8 893,455 + ABIE51_RS04110 0.67 +0.6 893,455 + ABIE51_RS04110 0.67 +0.8 893,455 + ABIE51_RS04110 0.67 -0.5 893,455 + ABIE51_RS04110 0.67 +0.1 893,455 + ABIE51_RS04110 0.67 +0.4 893,455 + ABIE51_RS04110 0.67 +0.2 893,455 + ABIE51_RS04110 0.67 -0.0 893,455 + ABIE51_RS04110 0.67 -0.1 893,455 + ABIE51_RS04110 0.67 +0.1 893,456 - ABIE51_RS04110 0.67 -0.0 893,456 - ABIE51_RS04110 0.67 +0.6 893,456 - ABIE51_RS04110 0.67 -0.8 893,456 - ABIE51_RS04110 0.67 -0.2 893,456 - ABIE51_RS04110 0.67 +0.7
Or see this region's nucleotide sequence