Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS01725 and ABIE51_RS01730 are separated by 17 nucleotides ABIE51_RS01730 and ABIE51_RS01735 overlap by 4 nucleotides ABIE51_RS01735 and ABIE51_RS01740 are separated by 248 nucleotides ABIE51_RS01740 and ABIE51_RS01745 are separated by 47 nucleotides
ABIE51_RS01725: ABIE51_RS01725 - hypothetical protein, at 386,386 to 386,811
_RS01725
ABIE51_RS01730: ABIE51_RS01730 - ParB/RepB/Spo0J family partition protein, at 386,829 to 387,737
_RS01730
ABIE51_RS01735: ABIE51_RS01735 - AAA family ATPase, at 387,734 to 388,546
_RS01735
ABIE51_RS01740: ABIE51_RS01740 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 388,795 to 389,454
_RS01740
ABIE51_RS01745: ABIE51_RS01745 - 4'-phosphopantetheinyl transferase superfamily protein, at 389,502 to 390,092
_RS01745
Position (kb) 387
388
389 Strain fitness (log2 ratio) -1
0
1
2 at 386.802 kb on - strand at 386.890 kb on + strand at 388.564 kb on - strand at 388.564 kb on - strand at 388.564 kb on - strand at 388.564 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 388.571 kb on - strand at 388.590 kb on + strand at 388.590 kb on + strand at 388.590 kb on + strand at 388.591 kb on - strand at 388.591 kb on - strand at 388.591 kb on - strand at 388.619 kb on + strand at 388.619 kb on + strand at 388.619 kb on + strand at 388.620 kb on - strand at 388.620 kb on - strand at 388.620 kb on - strand at 388.655 kb on + strand at 388.655 kb on + strand at 388.656 kb on - strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.661 kb on + strand at 388.662 kb on - strand at 388.662 kb on - strand at 388.662 kb on - strand at 388.750 kb on + strand at 388.750 kb on + strand at 388.750 kb on + strand at 389.015 kb on + strand, within ABIE51_RS01740 at 389.016 kb on - strand, within ABIE51_RS01740 at 389.240 kb on + strand, within ABIE51_RS01740 at 389.240 kb on + strand, within ABIE51_RS01740 at 389.240 kb on + strand, within ABIE51_RS01740 at 389.240 kb on + strand, within ABIE51_RS01740 at 389.240 kb on + strand, within ABIE51_RS01740 at 389.241 kb on - strand, within ABIE51_RS01740 at 389.241 kb on - strand, within ABIE51_RS01740 at 389.241 kb on - strand, within ABIE51_RS01740 at 389.241 kb on - strand, within ABIE51_RS01740 at 389.241 kb on - strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.315 kb on + strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.316 kb on - strand, within ABIE51_RS01740 at 389.349 kb on - strand, within ABIE51_RS01740 at 389.349 kb on - strand, within ABIE51_RS01740 at 389.349 kb on - strand, within ABIE51_RS01740 at 389.349 kb on - strand, within ABIE51_RS01740 at 389.466 kb on + strand at 389.466 kb on + strand at 389.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 386,802 - +0.0 386,890 + -1.1 388,564 - +1.1 388,564 - -0.1 388,564 - -0.5 388,564 - -0.2 388,571 - +0.2 388,571 - +0.5 388,571 - +0.2 388,590 + +0.4 388,590 + -0.5 388,590 + -0.3 388,591 - +0.4 388,591 - -0.1 388,591 - +2.0 388,619 + -0.5 388,619 + -0.2 388,619 + -0.0 388,620 - +0.9 388,620 - -0.3 388,620 - +0.8 388,655 + +0.0 388,655 + +0.3 388,656 - +1.3 388,661 + -0.3 388,661 + +0.6 388,661 + +0.1 388,661 + -0.4 388,661 + +0.7 388,661 + -0.3 388,661 + +0.3 388,661 + +0.2 388,662 - +1.0 388,662 - +0.9 388,662 - +1.5 388,750 + +0.6 388,750 + +0.5 388,750 + -0.1 389,015 + ABIE51_RS01740 0.33 +1.4 389,016 - ABIE51_RS01740 0.33 +0.8 389,240 + ABIE51_RS01740 0.67 -0.9 389,240 + ABIE51_RS01740 0.67 +0.5 389,240 + ABIE51_RS01740 0.67 +1.5 389,240 + ABIE51_RS01740 0.67 +1.3 389,240 + ABIE51_RS01740 0.67 +1.0 389,241 - ABIE51_RS01740 0.68 +1.3 389,241 - ABIE51_RS01740 0.68 +1.1 389,241 - ABIE51_RS01740 0.68 +1.3 389,241 - ABIE51_RS01740 0.68 -0.1 389,241 - ABIE51_RS01740 0.68 +0.8 389,315 + ABIE51_RS01740 0.79 -0.5 389,315 + ABIE51_RS01740 0.79 +1.1 389,315 + ABIE51_RS01740 0.79 +0.8 389,315 + ABIE51_RS01740 0.79 +2.2 389,315 + ABIE51_RS01740 0.79 +1.3 389,315 + ABIE51_RS01740 0.79 +1.3 389,315 + ABIE51_RS01740 0.79 +0.9 389,315 + ABIE51_RS01740 0.79 +0.9 389,315 + ABIE51_RS01740 0.79 +0.0 389,315 + ABIE51_RS01740 0.79 +1.3 389,316 - ABIE51_RS01740 0.79 +1.1 389,316 - ABIE51_RS01740 0.79 +0.6 389,316 - ABIE51_RS01740 0.79 +1.3 389,316 - ABIE51_RS01740 0.79 +1.3 389,316 - ABIE51_RS01740 0.79 +0.7 389,316 - ABIE51_RS01740 0.79 +1.1 389,316 - ABIE51_RS01740 0.79 +0.9 389,316 - ABIE51_RS01740 0.79 +1.9 389,349 - ABIE51_RS01740 0.84 +2.1 389,349 - ABIE51_RS01740 0.84 +0.7 389,349 - ABIE51_RS01740 0.84 +1.0 389,349 - ABIE51_RS01740 0.84 +1.2 389,466 + +0.6 389,466 + -1.0 389,467 - +0.0
Or see this region's nucleotide sequence