Experiment: Ying_sugar7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00265 and ABIE51_RS00270 are separated by 197 nucleotides ABIE51_RS00270 and ABIE51_RS00275 are separated by 208 nucleotides ABIE51_RS00275 and ABIE51_RS00280 are separated by 173 nucleotides ABIE51_RS00280 and ABIE51_RS00285 are separated by 31 nucleotides
ABIE51_RS00265: ABIE51_RS00265 - 3-oxoacyl-ACP synthase III, at 54,255 to 55,277
_RS00265
ABIE51_RS00270: ABIE51_RS00270 - DUF4156 domain-containing protein, at 55,475 to 55,798
_RS00270
ABIE51_RS00275: ABIE51_RS00275 - pitrilysin family protein, at 56,007 to 58,862
_RS00275
ABIE51_RS00280: ABIE51_RS00280 - SDR family oxidoreductase, at 59,036 to 59,746
_RS00280
ABIE51_RS00285: ABIE51_RS00285 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 59,778 to 60,257
_RS00285
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.159 kb on + strand, within ABIE51_RS00265 at 55.160 kb on - strand, within ABIE51_RS00265 at 55.160 kb on - strand, within ABIE51_RS00265 at 55.238 kb on + strand at 55.239 kb on - strand at 55.239 kb on - strand at 55.315 kb on + strand at 55.323 kb on - strand at 55.323 kb on - strand at 55.391 kb on + strand at 55.392 kb on - strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.422 kb on + strand at 55.423 kb on - strand at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 55.621 kb on - strand, within ABIE51_RS00270 at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.157 kb on + strand at 56.158 kb on - strand at 56.158 kb on - strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.206 kb on + strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.207 kb on - strand at 56.225 kb on - strand at 56.225 kb on - strand at 56.353 kb on + strand, within ABIE51_RS00275 at 56.353 kb on + strand, within ABIE51_RS00275 at 56.353 kb on + strand, within ABIE51_RS00275 at 56.353 kb on + strand, within ABIE51_RS00275 at 56.354 kb on - strand, within ABIE51_RS00275 at 56.354 kb on - strand, within ABIE51_RS00275 at 56.354 kb on - strand, within ABIE51_RS00275 at 56.464 kb on + strand, within ABIE51_RS00275 at 56.464 kb on + strand, within ABIE51_RS00275 at 56.465 kb on - strand, within ABIE51_RS00275 at 56.465 kb on - strand, within ABIE51_RS00275 at 56.473 kb on + strand, within ABIE51_RS00275 at 56.474 kb on - strand, within ABIE51_RS00275 at 56.474 kb on - strand, within ABIE51_RS00275 at 56.474 kb on - strand, within ABIE51_RS00275 at 56.641 kb on + strand, within ABIE51_RS00275 at 56.641 kb on + strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.642 kb on - strand, within ABIE51_RS00275 at 56.905 kb on + strand, within ABIE51_RS00275 at 56.905 kb on + strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 56.906 kb on - strand, within ABIE51_RS00275 at 57.085 kb on + strand, within ABIE51_RS00275 at 57.086 kb on - strand, within ABIE51_RS00275 at 57.086 kb on - strand, within ABIE51_RS00275 at 57.215 kb on + strand, within ABIE51_RS00275 at 57.216 kb on - strand, within ABIE51_RS00275 at 57.262 kb on + strand, within ABIE51_RS00275 at 57.262 kb on + strand, within ABIE51_RS00275 at 57.262 kb on + strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.263 kb on - strand, within ABIE51_RS00275 at 57.413 kb on + strand, within ABIE51_RS00275 at 57.413 kb on + strand, within ABIE51_RS00275 at 57.413 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.622 kb on + strand, within ABIE51_RS00275 at 57.710 kb on + strand, within ABIE51_RS00275 at 57.856 kb on + strand, within ABIE51_RS00275 at 57.857 kb on - strand, within ABIE51_RS00275 at 57.857 kb on - strand, within ABIE51_RS00275 at 58.120 kb on + strand, within ABIE51_RS00275 at 58.195 kb on + strand, within ABIE51_RS00275 at 58.196 kb on - strand, within ABIE51_RS00275 at 58.277 kb on - strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.294 kb on + strand, within ABIE51_RS00275 at 58.295 kb on - strand, within ABIE51_RS00275 at 58.295 kb on - strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.320 kb on + strand, within ABIE51_RS00275 at 58.321 kb on - strand, within ABIE51_RS00275 at 58.331 kb on - strand, within ABIE51_RS00275 at 58.331 kb on - strand, within ABIE51_RS00275 at 58.483 kb on + strand, within ABIE51_RS00275 at 58.483 kb on + strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.484 kb on - strand, within ABIE51_RS00275 at 58.552 kb on + strand, within ABIE51_RS00275 at 58.552 kb on + strand, within ABIE51_RS00275 at 58.652 kb on - strand at 58.652 kb on - strand at 58.652 kb on - strand at 58.757 kb on + strand at 58.893 kb on + strand at 58.893 kb on + strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.894 kb on - strand at 58.919 kb on + strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.920 kb on - strand at 58.942 kb on + strand at 59.002 kb on + strand at 59.002 kb on + strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.003 kb on - strand at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.214 kb on + strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.215 kb on - strand, within ABIE51_RS00280 at 59.507 kb on + strand, within ABIE51_RS00280 at 59.508 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.641 kb on - strand, within ABIE51_RS00280 at 59.721 kb on - strand at 59.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep A; time point 3 remove 55,159 + ABIE51_RS00265 0.88 +1.2 55,159 + ABIE51_RS00265 0.88 +1.1 55,159 + ABIE51_RS00265 0.88 +1.6 55,159 + ABIE51_RS00265 0.88 +2.5 55,159 + ABIE51_RS00265 0.88 +1.3 55,159 + ABIE51_RS00265 0.88 +1.3 55,159 + ABIE51_RS00265 0.88 +1.2 55,159 + ABIE51_RS00265 0.88 +2.8 55,159 + ABIE51_RS00265 0.88 +1.4 55,159 + ABIE51_RS00265 0.88 +1.4 55,159 + ABIE51_RS00265 0.88 +1.4 55,159 + ABIE51_RS00265 0.88 +1.3 55,160 - ABIE51_RS00265 0.88 +1.5 55,160 - ABIE51_RS00265 0.88 +1.3 55,238 + +1.5 55,239 - +1.9 55,239 - +2.1 55,315 + +1.4 55,323 - +0.0 55,323 - -1.6 55,391 + -0.4 55,392 - +0.5 55,422 + -1.1 55,422 + -0.5 55,422 + -1.0 55,422 + +0.1 55,422 + +0.2 55,423 - +0.5 55,621 - ABIE51_RS00270 0.45 +0.5 55,621 - ABIE51_RS00270 0.45 -0.1 55,621 - ABIE51_RS00270 0.45 -0.8 55,621 - ABIE51_RS00270 0.45 -1.2 55,621 - ABIE51_RS00270 0.45 -0.2 56,157 + -0.1 56,157 + -0.3 56,157 + -0.5 56,157 + -0.5 56,157 + +0.0 56,157 + -0.3 56,157 + -0.9 56,157 + +0.2 56,157 + +0.3 56,157 + -0.2 56,158 - +0.2 56,158 - +0.2 56,206 + -0.5 56,206 + -0.8 56,206 + +0.3 56,206 + -0.0 56,206 + -0.7 56,206 + -0.1 56,206 + +2.2 56,206 + +0.4 56,206 + -0.2 56,206 + -0.2 56,206 + -0.1 56,207 - +0.7 56,207 - +0.4 56,207 - -0.0 56,207 - +0.4 56,207 - +0.1 56,207 - +0.2 56,207 - +0.1 56,225 - +0.3 56,225 - +1.1 56,353 + ABIE51_RS00275 0.12 -0.2 56,353 + ABIE51_RS00275 0.12 +0.9 56,353 + ABIE51_RS00275 0.12 -1.3 56,353 + ABIE51_RS00275 0.12 -0.0 56,354 - ABIE51_RS00275 0.12 -0.7 56,354 - ABIE51_RS00275 0.12 +1.2 56,354 - ABIE51_RS00275 0.12 +0.3 56,464 + ABIE51_RS00275 0.16 -2.1 56,464 + ABIE51_RS00275 0.16 -1.7 56,465 - ABIE51_RS00275 0.16 +1.2 56,465 - ABIE51_RS00275 0.16 +0.7 56,473 + ABIE51_RS00275 0.16 -0.4 56,474 - ABIE51_RS00275 0.16 +0.7 56,474 - ABIE51_RS00275 0.16 +0.3 56,474 - ABIE51_RS00275 0.16 -0.5 56,641 + ABIE51_RS00275 0.22 +0.5 56,641 + ABIE51_RS00275 0.22 +0.0 56,642 - ABIE51_RS00275 0.22 +0.7 56,642 - ABIE51_RS00275 0.22 -0.2 56,642 - ABIE51_RS00275 0.22 +0.5 56,642 - ABIE51_RS00275 0.22 -0.3 56,642 - ABIE51_RS00275 0.22 -0.1 56,905 + ABIE51_RS00275 0.31 -0.2 56,905 + ABIE51_RS00275 0.31 +0.9 56,906 - ABIE51_RS00275 0.31 -0.4 56,906 - ABIE51_RS00275 0.31 +0.1 56,906 - ABIE51_RS00275 0.31 +0.4 56,906 - ABIE51_RS00275 0.31 -0.7 57,085 + ABIE51_RS00275 0.38 +0.5 57,086 - ABIE51_RS00275 0.38 -0.4 57,086 - ABIE51_RS00275 0.38 +0.7 57,215 + ABIE51_RS00275 0.42 -0.2 57,216 - ABIE51_RS00275 0.42 +0.6 57,262 + ABIE51_RS00275 0.44 +0.3 57,262 + ABIE51_RS00275 0.44 -0.6 57,262 + ABIE51_RS00275 0.44 -0.3 57,263 - ABIE51_RS00275 0.44 -1.7 57,263 - ABIE51_RS00275 0.44 +0.0 57,263 - ABIE51_RS00275 0.44 -0.5 57,263 - ABIE51_RS00275 0.44 -0.1 57,263 - ABIE51_RS00275 0.44 -0.4 57,413 + ABIE51_RS00275 0.49 +0.5 57,413 + ABIE51_RS00275 0.49 -0.3 57,413 + ABIE51_RS00275 0.49 +0.4 57,622 + ABIE51_RS00275 0.57 -0.1 57,622 + ABIE51_RS00275 0.57 +0.9 57,622 + ABIE51_RS00275 0.57 -0.1 57,622 + ABIE51_RS00275 0.57 -0.1 57,622 + ABIE51_RS00275 0.57 +0.3 57,710 + ABIE51_RS00275 0.60 -0.5 57,856 + ABIE51_RS00275 0.65 -0.1 57,857 - ABIE51_RS00275 0.65 -0.5 57,857 - ABIE51_RS00275 0.65 -0.6 58,120 + ABIE51_RS00275 0.74 -2.1 58,195 + ABIE51_RS00275 0.77 -0.7 58,196 - ABIE51_RS00275 0.77 +1.1 58,277 - ABIE51_RS00275 0.79 -0.2 58,294 + ABIE51_RS00275 0.80 +0.1 58,294 + ABIE51_RS00275 0.80 -0.3 58,294 + ABIE51_RS00275 0.80 +0.0 58,294 + ABIE51_RS00275 0.80 +0.1 58,295 - ABIE51_RS00275 0.80 -0.6 58,295 - ABIE51_RS00275 0.80 -0.7 58,320 + ABIE51_RS00275 0.81 +0.5 58,320 + ABIE51_RS00275 0.81 -0.0 58,320 + ABIE51_RS00275 0.81 -0.2 58,321 - ABIE51_RS00275 0.81 -0.6 58,331 - ABIE51_RS00275 0.81 -0.6 58,331 - ABIE51_RS00275 0.81 -0.4 58,483 + ABIE51_RS00275 0.87 +0.2 58,483 + ABIE51_RS00275 0.87 -0.7 58,484 - ABIE51_RS00275 0.87 -0.3 58,484 - ABIE51_RS00275 0.87 -0.1 58,484 - ABIE51_RS00275 0.87 -1.6 58,552 + ABIE51_RS00275 0.89 +1.5 58,552 + ABIE51_RS00275 0.89 +0.5 58,652 - -0.3 58,652 - -0.6 58,652 - +0.1 58,757 + -0.6 58,893 + +0.3 58,893 + +0.9 58,894 - +0.5 58,894 - +1.9 58,894 - -0.9 58,894 - +0.8 58,894 - +0.2 58,919 + +0.1 58,920 - -0.7 58,920 - +0.0 58,920 - -1.6 58,942 + +0.6 59,002 + -0.1 59,002 + -0.2 59,003 - -0.2 59,003 - -1.1 59,003 - +0.0 59,003 - +0.1 59,214 + ABIE51_RS00280 0.25 +0.1 59,214 + ABIE51_RS00280 0.25 -0.0 59,214 + ABIE51_RS00280 0.25 +0.3 59,214 + ABIE51_RS00280 0.25 +0.3 59,214 + ABIE51_RS00280 0.25 +0.4 59,214 + ABIE51_RS00280 0.25 +0.4 59,215 - ABIE51_RS00280 0.25 +0.2 59,215 - ABIE51_RS00280 0.25 +1.5 59,215 - ABIE51_RS00280 0.25 +0.3 59,215 - ABIE51_RS00280 0.25 -0.4 59,215 - ABIE51_RS00280 0.25 +0.1 59,507 + ABIE51_RS00280 0.66 -0.3 59,508 - ABIE51_RS00280 0.66 +0.1 59,641 - ABIE51_RS00280 0.85 +3.3 59,641 - ABIE51_RS00280 0.85 -0.4 59,721 - +0.3 59,806 - -1.0
Or see this region's nucleotide sequence