Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS19215

Experiment: Ying_all64 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep C; time point 3
4,187,527	+		ABIE51_RS19210	0.44	-1.3
4,187,527	+		ABIE51_RS19210	0.44	-0.7
4,187,527	+		ABIE51_RS19210	0.44	-1.3
4,187,527	+		ABIE51_RS19210	0.44	-1.7
4,187,527	+		ABIE51_RS19210	0.44	-0.0
4,187,527	+		ABIE51_RS19210	0.44	-1.3
4,187,527	+		ABIE51_RS19210	0.44	-2.0
4,187,528	-		ABIE51_RS19210	0.44	-1.7
4,187,528	-		ABIE51_RS19210	0.44	-1.6
4,187,626	+		ABIE51_RS19210	0.54	-2.3
4,187,627	-		ABIE51_RS19210	0.55	-1.5
4,187,627	-		ABIE51_RS19210	0.55	-2.3
4,187,632	+		ABIE51_RS19210	0.55	-1.8
4,187,632	+		ABIE51_RS19210	0.55	-0.0
4,187,632	+		ABIE51_RS19210	0.55	-2.3
4,187,632	+		ABIE51_RS19210	0.55	-1.4
4,187,632	+		ABIE51_RS19210	0.55	-2.6
4,187,633	-		ABIE51_RS19210	0.55	-1.5
4,187,633	-		ABIE51_RS19210	0.55	-1.9
4,187,633	-		ABIE51_RS19210	0.55	-0.7
4,187,633	-		ABIE51_RS19210	0.55	-1.9
4,187,692	+		ABIE51_RS19210	0.61	-1.9
4,187,692	+		ABIE51_RS19210	0.61	-1.6
4,187,692	+		ABIE51_RS19210	0.61	-0.7
4,187,692	+		ABIE51_RS19210	0.61	-2.2
4,187,692	+		ABIE51_RS19210	0.61	-4.1
4,187,692	+		ABIE51_RS19210	0.61	-1.6
4,187,692	+		ABIE51_RS19210	0.61	-2.2
4,187,692	+		ABIE51_RS19210	0.61	-2.4
4,187,693	-		ABIE51_RS19210	0.62	-1.7
4,187,693	-		ABIE51_RS19210	0.62	-1.8
4,187,693	-		ABIE51_RS19210	0.62	-1.1
4,187,693	-		ABIE51_RS19210	0.62	-1.6
4,187,693	-		ABIE51_RS19210	0.62	-1.0
4,187,693	-		ABIE51_RS19210	0.62	-2.5
4,187,693	-		ABIE51_RS19210	0.62	-2.3
4,187,693	-		ABIE51_RS19210	0.62	-4.8
4,187,693	-		ABIE51_RS19210	0.62	-1.5
4,187,693	-		ABIE51_RS19210	0.62	+0.3
4,187,693	-		ABIE51_RS19210	0.62	-1.2
4,187,693	-		ABIE51_RS19210	0.62	-1.9
4,187,842	+		ABIE51_RS19210	0.77	-2.8
4,187,843	-		ABIE51_RS19210	0.78	-2.6
4,187,911	+		ABIE51_RS19210	0.85	-1.0
4,187,912	-		ABIE51_RS19210	0.85	-2.3
4,187,912	-		ABIE51_RS19210	0.85	-1.6
4,188,088	+				-0.7
4,188,088	+				-1.3
4,188,088	+				-0.8
4,188,088	+				-0.8
4,188,088	+				-0.2
4,188,088	+				-0.6
4,188,088	+				-1.0
4,188,088	+				-1.0
4,188,088	+				-1.7
4,188,089	-				-0.7
4,188,089	-				-0.5
4,188,089	-				-0.5
4,188,089	-				+0.7
4,188,089	-				+0.0
4,188,089	-				-0.0
4,188,089	-				-0.1
4,188,089	-				-0.3
4,188,089	-				+1.0
4,188,209	+				-0.0
4,188,209	+				-1.6
4,188,209	+				-1.2
4,188,209	+				-1.3
4,188,209	+				-1.0
4,188,263	+				-0.7
4,188,263	+				-0.0
4,188,263	+				-0.0
4,188,264	-				+0.1
4,188,264	-				-0.5
4,188,264	-				+0.6
4,188,264	-				-0.0
4,188,266	+				-0.3
4,188,327	+				-0.4
4,188,327	+				-0.4
4,188,327	+				-0.2
4,188,327	+				-0.4
4,188,327	+				-0.7
4,188,327	+				+1.6
4,188,327	+				-0.8
4,188,327	+				-0.6
4,188,327	+				-0.3
4,188,327	+				-1.5
4,188,328	-				-0.5
4,188,328	-				-0.2
4,188,328	-				-0.2
4,188,328	-				+0.3
4,188,328	-				-0.6
4,188,328	-				-0.0
4,188,328	-				-0.5
4,188,328	-				+0.3
4,188,328	-				-0.6
4,188,328	-				+1.7
4,188,328	-				+1.0
4,188,369	+				-0.1
4,188,369	+				-0.3
4,188,369	+				-0.4
4,188,370	-				+0.3
4,188,370	-				+0.1
4,188,370	-				+0.4
4,188,374	+				-0.8
4,188,374	+				-0.0
4,188,683	+				-1.3
4,188,683	+				-1.4
4,188,683	+				-0.7
4,188,684	-				-0.7
4,188,684	-				-1.4
4,188,684	-				-1.2
4,188,684	-				-1.4
4,189,065	-		ABIE51_RS19215	0.20	-1.1
4,189,070	+		ABIE51_RS19215	0.21	-0.3
4,189,070	+		ABIE51_RS19215	0.21	+0.7
4,189,071	-		ABIE51_RS19215	0.21	-1.4
4,189,071	-		ABIE51_RS19215	0.21	-1.7
4,189,071	-		ABIE51_RS19215	0.21	-1.4
4,189,071	-		ABIE51_RS19215	0.21	-1.4
4,189,124	+		ABIE51_RS19215	0.22	-1.4
4,189,125	-		ABIE51_RS19215	0.22	-1.5
4,189,136	+		ABIE51_RS19215	0.23	-1.3
4,189,136	+		ABIE51_RS19215	0.23	-1.6
4,189,241	+		ABIE51_RS19215	0.26	-2.2
4,189,242	-		ABIE51_RS19215	0.26	-1.2
4,189,319	+		ABIE51_RS19215	0.28	-0.9
4,189,319	+		ABIE51_RS19215	0.28	-2.1
4,189,320	-		ABIE51_RS19215	0.28	-1.4
4,189,427	+		ABIE51_RS19215	0.32	-1.6
4,189,427	+		ABIE51_RS19215	0.32	-1.1
4,189,427	+		ABIE51_RS19215	0.32	-0.4
4,189,427	+		ABIE51_RS19215	0.32	-1.6
4,189,428	-		ABIE51_RS19215	0.32	-1.7
4,189,448	+		ABIE51_RS19215	0.32	-0.3
4,189,449	-		ABIE51_RS19215	0.32	-1.2
4,189,449	-		ABIE51_RS19215	0.32	-1.7
4,189,542	-		ABIE51_RS19215	0.35	-2.8
4,189,542	-		ABIE51_RS19215	0.35	-1.0
4,189,628	+		ABIE51_RS19215	0.38	-1.3
4,189,628	+		ABIE51_RS19215	0.38	-1.1
4,189,628	+		ABIE51_RS19215	0.38	-1.2
4,189,628	+		ABIE51_RS19215	0.38	-0.3
4,189,629	-		ABIE51_RS19215	0.38	-1.4
4,189,629	-		ABIE51_RS19215	0.38	-1.3
4,189,629	-		ABIE51_RS19215	0.38	-2.7
4,189,629	-		ABIE51_RS19215	0.38	-3.2
4,189,629	-		ABIE51_RS19215	0.38	-1.6
4,189,673	+		ABIE51_RS19215	0.39	-1.9
4,189,673	+		ABIE51_RS19215	0.39	-0.8
4,189,673	+		ABIE51_RS19215	0.39	-0.8
4,189,673	+		ABIE51_RS19215	0.39	-1.6
4,189,673	+		ABIE51_RS19215	0.39	-1.4
4,189,673	+		ABIE51_RS19215	0.39	-2.5
4,189,673	+		ABIE51_RS19215	0.39	-1.5
4,189,673	+		ABIE51_RS19215	0.39	-1.4
4,189,673	+		ABIE51_RS19215	0.39	-1.3
4,189,674	-		ABIE51_RS19215	0.39	-1.1
4,189,674	-		ABIE51_RS19215	0.39	-1.6
4,189,674	-		ABIE51_RS19215	0.39	-1.0
4,189,674	-		ABIE51_RS19215	0.39	+0.2
4,189,674	-		ABIE51_RS19215	0.39	-1.4
4,189,674	-		ABIE51_RS19215	0.39	-1.3
4,189,674	-		ABIE51_RS19215	0.39	-1.3
4,189,674	-		ABIE51_RS19215	0.39	-1.2
4,189,674	-		ABIE51_RS19215	0.39	-0.8
4,189,674	-		ABIE51_RS19215	0.39	-0.3
4,189,674	-		ABIE51_RS19215	0.39	-0.0
4,189,793	+		ABIE51_RS19215	0.43	-1.1
4,189,793	+		ABIE51_RS19215	0.43	-1.8
4,189,793	+		ABIE51_RS19215	0.43	-0.5
4,189,794	-		ABIE51_RS19215	0.43	-1.1
4,189,794	-		ABIE51_RS19215	0.43	-1.8
4,189,794	-		ABIE51_RS19215	0.43	-1.6
4,189,794	-		ABIE51_RS19215	0.43	-1.6
4,189,794	-		ABIE51_RS19215	0.43	-3.0
4,189,877	+		ABIE51_RS19215	0.46	-1.2
4,189,877	+		ABIE51_RS19215	0.46	-0.6
4,189,877	+		ABIE51_RS19215	0.46	-2.0
4,189,878	-		ABIE51_RS19215	0.46	+0.7
4,190,039	+		ABIE51_RS19215	0.51	-1.5
4,190,384	+		ABIE51_RS19215	0.61	-2.0
4,190,384	+		ABIE51_RS19215	0.61	-1.4
4,190,384	+		ABIE51_RS19215	0.61	-1.8
4,190,384	+		ABIE51_RS19215	0.61	-1.4
4,190,384	+		ABIE51_RS19215	0.61	-1.5
4,190,385	-		ABIE51_RS19215	0.61	-0.8
4,190,468	+		ABIE51_RS19215	0.64	-1.0
4,190,468	+		ABIE51_RS19215	0.64	-1.0
4,190,468	+		ABIE51_RS19215	0.64	-1.2
4,190,468	+		ABIE51_RS19215	0.64	+0.3
4,190,469	-		ABIE51_RS19215	0.64	-1.0
4,190,469	-		ABIE51_RS19215	0.64	-2.1
4,190,469	-		ABIE51_RS19215	0.64	-0.9
4,190,469	-		ABIE51_RS19215	0.64	-1.6
4,190,469	-		ABIE51_RS19215	0.64	-1.9
4,190,472	-		ABIE51_RS19215	0.64	-2.0
4,190,472	-		ABIE51_RS19215	0.64	-1.3
4,190,472	-		ABIE51_RS19215	0.64	-1.0
4,190,684	+		ABIE51_RS19215	0.71	-1.3
4,190,685	-		ABIE51_RS19215	0.71	-0.4
4,190,685	-		ABIE51_RS19215	0.71	-0.3
4,190,685	-		ABIE51_RS19215	0.71	-2.6
4,190,687	+		ABIE51_RS19215	0.71	-1.8
4,190,687	+		ABIE51_RS19215	0.71	-1.6
4,190,687	+		ABIE51_RS19215	0.71	-0.7
4,190,688	-		ABIE51_RS19215	0.71	-1.0
4,190,688	-		ABIE51_RS19215	0.71	-1.5
4,190,688	-		ABIE51_RS19215	0.71	-1.4
4,191,246	-		ABIE51_RS19215	0.88	-1.6
4,191,424	+				-1.4
4,191,424	+				-1.2
4,191,424	+				-1.7
4,191,425	-				-1.3
4,191,443	+				-0.0
4,191,443	+				-0.0
4,191,443	+				-1.2
4,191,443	+				-1.3
4,191,444	-				+0.3
4,191,444	-				-0.5
4,191,444	-				-1.7
4,191,444	-				-0.6
4,191,444	-				-1.1
4,191,444	-				-0.3
4,191,444	-				-1.3
4,191,539	+				-1.7
4,191,539	+				-1.0
4,191,539	+				-1.5
4,191,539	+				-0.9
4,191,540	-				+1.0
4,191,540	-				-1.0
4,191,540	-				+1.0
4,191,540	-				-1.5
4,191,540	-				-1.3
4,191,758	+				+0.2
4,191,758	+				+0.8
4,191,759	-				-1.1
4,191,759	-				-0.4
4,191,759	-				-0.2
4,191,759	-				-0.3
4,191,900	+				-2.0
4,191,900	+				+0.4
4,191,901	-				-0.9
4,191,901	-				+0.3
4,191,911	-				-0.2
4,191,911	-				-0.3
4,191,935	+				+0.4
4,191,935	+				-0.0
4,191,936	-				+0.3
4,191,936	-				+0.5
4,192,022	+				-0.5
4,192,022	+				-0.7
4,192,022	+				+0.5
4,192,022	+				+0.6
4,192,023	-				+0.2
4,192,023	-				-0.5
4,192,444	+		ABIE51_RS19220	0.16	+0.4
4,192,504	-		ABIE51_RS19220	0.18	+0.2